Abstract
Organisms that share the capability of storing information about experiences in the past have an actively generated background resource on which they can compare and evaluate more recent experiences in order to quickly or even better react than in previous situations. This is an essential competence for all reaction and adaptation purposes of living organisms. Such memory/learning skills can be found from akaryotes up to unicellular eukaryotes, fungi, animals and plants, although until recently, it had been mentioned only as a capability of higher animals. With the rise of epigenetics, the context-dependent marking of experiences at both the phenotype and the genotype level is an essential perspective to understand memory and learning in all organisms. Both memory and learning depend on a variety of successful communication processes within the whole organism.
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References
Aramayo R, Selker EU (2013) Neurospora crassa, a model system for epigenetics research. Cold Spring Harb Perspect Biol 5:a017921
Atkins JF, Gesteland RF, Cech TR (eds) (2011) RNA worlds. From life’s origin to diversity in gene regulation. Cold Spring Harbor Laboratory Press, New York
Badri DV, Weir TL, van der Lelie D, Vivanco JM (2009) Rhizosphere chemical dialogues: plant-microbe interactions. Curr Opin Biotechnol 20:642–650
Bais HP, Park SW, Weir TL, Callaway RM, Vivanco JM (2004) How plants communicate using the underground information superhighway. Trends Plant Sci 9:26–32
Baluška F, Mancuso S (2009) Plant neurobiology: from sensory biology, via plant communication, to social plant behavior. Cogn Process 10:3–7
Baluška F, Hlavacka A, Mancuso S, Barlow PW (2006) Neurobiological view of plants and their body plan. In: Baluška F, Mancuso S, Volkmann D (eds) Communication in plants: neuronal aspects of plant life. Springer, New York, pp 19–35
Baluška F, Lev-Yadun S, Mancuso S (2010) Swarm intelligence in plant roots. Trends Ecol Evol 25:682–683
Barlow DP (2011) Genomic imprinting: a mammalian epigenetic discovery model. Annu Rev Genet 45:379–403
Baulcombe DC, Dean C (2014) Epigenetic regulation in plant responses to the environment. Cold Spring Harb Perspect Biol 6:a019471
Ben Jacob E, Becker I, Shapira Y, Levine H (2004) Bacterial linguistic communication and social intelligence. Trends Microbiol 12:366–372
Biergans SD, Claudianos C, Reinhard J, Galizia CG (2016) DNA methylation adjusts the specificity of memories depending on the learning context and promotes relearning in honeybees. Front Mol Neurosci 9:82
Birnbaum KD, Roudier F (2017) Epigenetic memory and cell fate reprogramming in plants. Regeneration 4:15–20
Blaze J, Roth TL (2013) Epigenetic mechanisms in learning and memory. Wiley Interdiscip Rev Cogn Sci 4:105–115
Boyko A, Kovalchuk I (2011) Genome instability and epigenetic modification—heritable responses to environmental stress? Curr Opin Plant Biol 14:260–266
Casadesús J, Low D (2006) Epigenetic gene regulation in the bacterial world. Microbiol Mol Biol Rev 70:830–856
Cichewicz R (2012) Epigenetic regulation of secondary metabolite biosynthetic genes in fungi. In: Witzany G (ed) Biocommunication of fungi. Springer, Dordrecht, pp 57–69
Davidson AR (2017) Virology: phages make a group decision. Nature 541:466–467
Diaz-Munos SL, Sanjuan R, West S (2017) Sociovirology: conflict, cooperation, and communication among viruses. Cell Host Microbe 22:437–441
Dunlap JC, Loros JJ (2004) The neurospora circadian system. J Biol Rhythm 19:414–424
D’Urso A, Brickner JH (2017) Epigenetic transcriptional memory. Curr Genet 63:435–439
Erez Z, Steinberger-Levy I, Shamir M, Doron S, Stokar-Avihail A, Peleg Y, Melamed S, Leavitt A, Savidor A, Albeck S, Amitai G, Sorek R (2017) Communication between viruses guides lysis-lysogeny decisions. Nature 541:488–493
Gagliano M, Grimonprez M, Depczynski M, Renton M (2017) Tuned in: plant roots use sound to locate water. Oecologia 184:151–160
Grativol C, Hemerly AS, Ferreira PC (2012) Genetic and epigenetic regulation of stress responses in natural plant populations. Biochim Biophys Acta 1819:176–185
Gutzat R, Mittelsten Scheid O (2012) Epigenetic responses to stress: triple defense? Curr Opin Plant Biol 15:568–573
Haak DC, Fukao T, Grene R, Hua Z, Ivanov R, Perrella G, Li S (2017) Multilevel regulation of abiotic stress responses in plants. Front Plant Sci 8:1564
Hayden EJ, Lehman N (2006) Self-assembly of a group I intron from inactive oligonucleotide fragments. Chem Biol 13:909–918
Smit S, Yarus M, Knight R (2006) Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories. RNA 12:1–14
Kobayashi I (2001) Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution. Nucleic Acids Res 29:3742–3756
Kohlenbrander PE, Egland PG, Diaz PI, Palmer RJ (2005) Genome-genome interactions: bacterial communities in intitial dental plaque. Trends Microbiol 13:11–15
Kronholm I, Johannesson H, Ketola T (2016) Epigenetic control of phenotypic plasticity in the filamentous fungus Neurospora crassa. G3 (Bethesda) 6:4009–4022
Lambowitz AM, Zimmerly S (2011) Group II introns: mobile ribozymes that invade DNA. Cold Spring Harb Perspect Biol 3(8):a003616
Lämke J, Bäurle I (2017) Epigenetic and chromatin-based mechanisms in environmental stress adaptation and stress memory in plants. Genome Biol 18:124
Lolle SJ, Victor JL, Young JM, Pruitt RE (2005) Genome wide non mendelian inheritance of extra genomic information in Arabidopsis. Nature 434:505–509
Losick R, Kaiser D (1997) Why and how bacteria communicate. Sci Am 276:68–73
Margulis L (1996) Archaeal-eubacterial mergers in the origin of Eukarya: phylogenetic classification of life. Proc Natl Acad Sci U S A 93:1071–1076
Mathis R, Ackermann M (2016) Response of single bacterial cells to stress gives rise to complex history dependence at the population level. Proc Natl Acad Sci U S A 113:4224–4229
Matzke MA, Kanno T, Matzke AJ (2015) RNA-directed DNA methylation: the evolution of a complex epigenetic pathway in flowering plants. Annu Rev Plant Biol 66:243–267
Matzke M, Kanno T, Daxinger L, Huettel B, Matzke AJ (2009) RNA-mediated chromatin-based silencing in plants. Curr Opin Cell Biol 21:367–376
McKeown PC, Spillane C (2014) Landscaping plant epigenetics. Methods Mol Biol 1112:1–24
Menzel R (2012) The honey bee as a model for understanding the basis of cognition. Nat Rev Neurosci 13:758–768
Mercer TR, Dinger ME, Mariani J, Kosik KS, Mehler MF, Mattick JS (2008) Noncoding RNAs in long-term memory formation. Neuroscientist 14:434–445
Mruk I, Kobayashi I (2014) To be or not to be: regulation of restriction-modification systems and other toxin-antitoxin systems. Nucleic Acids Res 42:70–86
Nowacki M, Landweber L (2009) Epigenetic inheritance in ciliates. Curr Opin Microbiol 12:638–643
Oliverio AM, Katz LA (2014) The dynamic nature of genomes across the tree of life. Genome Biol Evol 6:482–488
Parvizi J, Damasio A (2001) Consciousness and the brainstem. Cognition 79:135–160
Parvizi J, Damasio AR (2003) Neuroanatomical correlates of brainstem coma. Brain 126:1524–1536
Pearson H (2005) Cress overturns textbook genetics. Nature 434:351–360
Pikaard CS, Mittelsten Scheid O (2014) Epigenetic regulation in plants. Cold Spring Harb Perspect Biol 6:a01931
Rajewski N, Jurga S, Barciszewski J (eds) (2017) Plant epigenetics. Springer, Cham
Rohwer F, Youle M, Maughan H, Hisikawa N (2014) Life in our phage world. Wholon, San Diego
Sacktor TC, Hell JW (2017) The genetics of PKMζ and memory maintenance. Sci Signal 10:505
Santos AP, Ferreira LJ, Oliveira MM (2017) Concerted flexibility of chromatin structure, methylome, and histone modifications along with plant stress responses. Biology 6:3
Schauder S, Bassler BL (2001) The languages of bacteria. Genes Dev 15:1468–1480
Shapiro JA (2007) Bacteria are small but not stupid: cognition, natural genetic engineering and socio-bacteriology. Stud Hist Phil Biol Biomed Sci 38:807–819
Singh DP, Saudemont B, Guglielmi G, Arnaiz O, Goût JF, Prajer M, Potekhin A, Przybòs E, Aubusson-Fleury A, Bhullar S, Bouhouche K, Lhuillier-Akakpo M, Tanty V, Blugeon C, Alberti A, Labadie K, Aury JM, Sperling L, Duharcourt S, Meyer E (2014) Genome-defence small RNAs exapted for epigenetic mating-type inheritance. Nature 509:447–452
Slotkin RK, Martienssen R (2007) Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 8:272–285
Talbert PB, Henikoff S (2014) Environmental responses mediated by histone variants. Trends Cell Biol 24:642–650
Trewavas A (2003) Aspects of plant intelligence. Ann Bot 92:1–20
Trewavas A (2005) Green plants as intelligent organisms. Trends Plant Sci 10:413–419
Urtel GC, Rind T, Braun D (2017) Reversible switching of cooperating replicators. Phys Rev Lett 118:078102
Vaidya N, Manapat ML, Chen IA, Xulvi-Brunet R, Hayden EJ, Lehman N (2012) Spontaneous network formation among cooperative RNA replicators. Nature 491:72–77
Villarreal LP (2005) Viruses and the evolution of life. ASM Press, Washington, DC
Villarreal LP (2009a) The source of self: genetic parasites and the origin of adaptive immunity. Ann N Y Acad Sci 1178:194–232
Villarreal LP (2009b) Origin of group identity. Viruses, addiction and cooperation. Springer, New York
Villarreal LP (2011) Viral ancestors of antiviral systems. Viruses 3:1933–1958
Villarreal LP (2012) The addiction module as a social force. In: Witzany G (ed) Viruses: essential agents of life. Springer, Dordrecht, pp 107–145
Villarreal LP (2015) Force for ancient and recent life: viral and stem-loop RNA consortia promote life. Ann N Y Acad Sci 1341:25–34
Villarreal LP, Witzany G (2015) When competing viruses unify: evolution, conservation, and plasticity of genetic identities. J Mol Evol 80:305–318
Weigl D, Jürgens G (2005) Hotheaded healer. Nature 434:443
Witzany G (1995) From the “logic of the molecular syntax” to molecular pragmatism. Explanatory deficits in Manfred Eigen’s concept of language and communication. Evol Cognit 1:148–168
Witzany G (2000) Life: the communicative structure. BoD, Norderstedt
Witzany G (2006) Serial endosymbiotic theory (SET): the biosemiotic update. Acta Biotheor 54:103–117
Witzany G (2010) Biocommunication and natural genome editing. Springer, Dordrecht
Witzany G (ed) (2011) Biocommunication in soil microorganisms. Springer, Heidelberg
Witzany G (ed) (2012) Biocommunication of fungi. Springer, Dordrecht
Witzany G (ed) (2014) Biocommunication of animals. Springer, Dordrecht
Witzany G (ed) (2017) Biocommunication of archaea. Springer, Dordrecht
Witzany G, Baluška F (eds) (2012) Biocommunication of plants. Springer, Heidelberg
Witzany G, Nowacki M (eds) (2016) Biocommunication of ciliates. Springer, Dordrecht
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Witzany, G. (2018). Memory and Learning as Key Competences of Living Organisms. In: Baluska, F., Gagliano, M., Witzany, G. (eds) Memory and Learning in Plants. Signaling and Communication in Plants. Springer, Cham. https://doi.org/10.1007/978-3-319-75596-0_1
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