Abstract
Transport across heterogeneous, patchy environments is a ubiquitous phenomenon spanning fields of study including ecological movement, intracellular transport and regions of specialised function in a cell. These regions or patches may be highly heterogeneous in their properties, and often exhibit anomalous behaviour (resulting from e.g. crowding or viscoelastic effects) which necessitates the inclusion of non-Markovian dynamics in their study. However, many such processes are also subject to an internal self-regulating or tempering process due to concurrent competing functions being carried out. In this work we develop a model for anomalous transport across a heterogeneous, patchy environment subject to tempering. We show that in the long-time an equilibrium may be reached with constant effective transport rates between the patches. This result is qualitatively different from untempered systems where subdiffusion results in the long-time accumulation of all particles in the patch with lowest anomalous exponent, 0 < μ < 1.
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References
Petrovskii SV, Morozov AY, Venturino E (2002) Allee effect makes possible patchy invasion in a predator-prey system. Ecol Lett 5(3):345–352
Bressloff PC (2014) Stochastic processes in cell biology. Springer, Berlin
Méndez V, Fedotov S, Horsthemke W (2010) Reaction-transport systems: mesoscopic foundations, fronts, and spatial instabilities. Springer, Berlin
Méndez V, Campos D, Bartumeus F (2014) Stochastic foundations in movement ecology: anomalous diffusion, front propagation and random searches. Springer, Berlin
Schewe M, Nematian-Ardestani E, Sun H, Musinszki M et al (2016) A non-canonical voltage-sensing mechanism controls gating in K2P K + channels. Cell 164(5):937–949
Li N, Wu J-X, Ding D, Cheng J, Gao N, Chen L (2017) Structure of a pancreatic ATP-sensitive potassium channel. Cell 168(1–2):101–110
Jahn R, Fasshauer D (2012) Molecular machines governing exocytosis of synaptic vesicles. Nature 490(7419):201–207
Hirokawa N, Takemura R (2004) Molecular motors in neuronal development, intracellular transport and diseases. Curr Opin Neurobiol 14(5):564–573
Aridor M, Hannan LA (2002) Traffic jams II: an update of diseases of intracellular transport. Traffic 3(11):781–790
Saxton MJ (2001) Anomalous subdiffusion in fluorescence photobleaching recovery: a Monte Carlo study. Biophys J 81(4):2226–2240
Santamaria F, Wils S, De Schutter E, Augustine GJ (2006) Anomalous diffusion in Purkinje cell dendrites caused by spines. Neuron 52(4):635–648
Golding I, Cox EC (2006) Physical nature of bacterial cytoplasm. Phys Rev Lett 96:098102
Goychuk I, Kharchenko VO, Metzler R (2014) How molecular motors work in the crowded environment of living cells: coexistence and efficiency of normal and anomalous transport. PLoS ONE 9(3):1–7
Klafter J, Sokolov IM (2011) First steps in random walks: from tools to applications. Oxford University Press, Oxford
Ariel G, Rabani A, Benisty S, Partridge JD, Harshey RM, Be’er A (2015) Swarming bacteria migrate by Lévy walk. Nat Commun 6(8396)
Harris TH, Banigan EJ, Christian DA, Konradt C, Wojno EDT, Norose K, Wilson EH, John B, Weninger W, Luster AD, Liu AJ, Hunter CA (2012) Generalized Lévy walks and the role of chemokines in migration of effector CD8+ T cells. Nature 486(7404):545–548
Bruno L, Levi V, Brunstein M, Despósito MA (2009) Transition to superdiffusive behavior in intracellular actin-based transport mediated by molecular motors. Phys Rev E 80:011912
Köhler S, Schaller V, Bausch AR (2011) Structure formation in active networks. Nat Mater 10:462–468
Chechkin AV, Gorenflo R, Sokolov IM (2005) Fractional diffusion in inhomogeneous media. J Phys A Math Gen 38(42):L679
Fedotov S, Falconer S (2012) Subdiffusive master equation with space-dependent anomalous exponent and structural instability. Phys Rev E 85:031132
Korabel N, Barkai E (2010) Paradoxes of subdiffusive infiltration in disordered systems. Phys Rev Lett 104:170603
Fedotov S, Korabel N (2015) Self-organized anomalous aggregation of particles performing nonlinear and non-Markovian random walks. Phys Rev E 92:062127
Fedotov S, Korabel N (2017) Emergence of Lévy walks in systems of interacting individuals. Phys Rev E 95:030107
Stickler BA, Schachinger E (2011) Continuous time anomalous diffusion in a composite medium. Phys Rev E 84:021116
Lawless JF (2003) Statistical models and methods for lifetime data. Wiley, New York
Fedotov S, Iomin A, Ryashko L (2011) Non-Markovian models for migration-proliferation dichotomy of cancer cells: anomalous switching and spreading rate. Phys Rev E 84:061131
Goychuk I (2015) Anomalous transport of subdiffusing cargos by single kinesin motors: the role of mechano-chemical coupling and anharmonicity of tether. Phys Biol 12(1):016013
Hafner AE, Santen L, Rieger H, Shaebani MR (2016) Run-and-pause dynamics of cytoskeletal motor proteins. Nat Sci Rep 6(37162)
Krishnamurthy H, Piscitelli CL, Gouaux E (2009) Unlocking the molecular secrets of sodium-coupled transporters. Nature 459:347–355
Guigas G, Weiss M (2008) Sampling the cell with anomalous diffusion – the discovery of slowness. Biophys J 94(1):90–94
Fedotov S, Méndez V (2008) Non-Markovian model for transport and reactions of particles in spiny dendrites. Phys Rev Lett 101:218102
Fedotov S, Al-Shamsi H, Ivanov A, Zubarev A (2010) Anomalous transport and nonlinear reactions in spiny dendrites. Phys Rev E 82:041103
Cox DR, Miller HD (1977) The theory of stochastic processes. CRC Press, Boca Raton
Cox DR (1970) Renewal theory. Methuen, London
Miller KS, Ross B (1993) An introduction to the fractional calculus and fractional differential equations. Wiley, New York
Krapivinsky G, Kirichok Y, Clapham DE (2004) The mitochondrial calcium uniporter is a highly selective ion channel. Nature 427:360–364
Boillée S, Velde CV, Cleveland DW (2006) ALS: a disease of motor neurons and their nonneuronal neighbors. Neuron 52(1):39–59
Meerschaert MM, Zhang Y, Baeumer B (2008) Tempered anomalous diffusion in heterogeneous systems. Geophys Res Lett 35(17):L17403
Acknowledgements
The authors would like to thank N. Korabel and T. Waigh for fruitful discussions. This work is supported by EPSRC grant EP/N018060/1.
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Fedotov, S., Stage, H. (2018). Subdiffusive Transport in Heterogeneous Patchy Environments. In: Olivares-Quiroz, L., Resendis-Antonio, O. (eds) Quantitative Models for Microscopic to Macroscopic Biological Macromolecules and Tissues. Springer, Cham. https://doi.org/10.1007/978-3-319-73975-5_3
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DOI: https://doi.org/10.1007/978-3-319-73975-5_3
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