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Discriminative Log-Euclidean Kernels for Learning on Brain Networks

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Connectomics in NeuroImaging (CNI 2017)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 10511))

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Abstract

The increasing availability of functional Magnetic Resonance Imaging (fMRI) has led to a number of studies of brain networks with the aim of developing computer aided diagnosis of disease. Typically these are based on a statistical or machine learning method operating on connectivity networks, or features derived from them. This work presents a novel kernel method allowing classification tasks on connectivity networks represented as symmetric positive definite (SPD) matrices. It defines a kernel based on geodesic distances measured on the Riemannian manifold of SPD matrices, and automatically adjusts the eigenvalues of the matrices to improve accuracy. This is coupled with a Gaussian Process (GP) classifier, and used to discriminate healthy controls from Schizophrenia patients. The new kernel offers superior classification accuracy to previous kernels, and the adjusted eigenvalues allow discovery of clinically meaningful differences in connectivity between patients and controls.

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Notes

  1. 1.

    tinyurl.com/fcon1000-cobre.

  2. 2.

    http://www.fil.ion.ucl.ac.uk/spm.

  3. 3.

    http://www.nitrc.org/projects/gretna/.

  4. 4.

    http://www.gaussianprocess.org/gpml/code/matlab/doc/.

References

  1. Arsigny, V., Fillard, P., Pennec, X., Ayache, N.: Fast and simple computations on tensors with log-euclidean metrics. Research report RR-5584, INRIA (2005)

    Google Scholar 

  2. Çetin, M.S., Christensen, F., Abbott, C.C., Stephen, J.M., Mayer, A.R., Caive, J.M., Bustillo, J.R., Pearlson, G.D., Calhoun, V.D.: Thalamus and posterior temporal lobe show greater inter-network connectivity at rest and across sensory paradigms in schizophrenia. Neuroimage 97, 117–126 (2014)

    Article  Google Scholar 

  3. Dodero, L., Minh, H.Q., San Biagio, M., Murino, V., Sona, D.: Kernel-based classification for brain connectivity graphs on the Riemannian manifold of positive definite matrices. In: 2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI), pp. 42–45, April 2015

    Google Scholar 

  4. Dodero, L., Sambataro, F., Murino, V., Sona, D.: Kernel-based analysis of functional brain connectivity on grassmann manifold. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 604–611. Springer, Cham (2015). doi:10.1007/978-3-319-24574-4_72

    Chapter  Google Scholar 

  5. Jayasumana, S., Hartley, R., Salzmann, M., Li, H., Harandi, M.: Kernel methods on riemannian manifolds with gaussian RBF kernels. IEEE Trans. Pattern Anal. Mach. Intell. 37(12), 2464–2477 (2015)

    Article  Google Scholar 

  6. Mechelli, A., Allen, P., Amaro, E., Fu, C.H.Y., Williams, S.C.R., Brammer, M.J., Johns, L.C., McGuire, P.K.: Misattribution of speech and impaired connectivity in patients with auditory verbal hallucinations. Hum. Brain Mapp. 28(11), 1213–1222 (2007)

    Article  Google Scholar 

  7. Minka, T.P.: Expectation propagation for approximate Bayesian inference. In: Proceedings of the 17th Conference in Uncertainty in Artificial Intelligence (UAI 2001), pp. 362–369. Morgan Kaufmann Publishers Inc. (2001)

    Google Scholar 

  8. Ng, B., Dressler, M., Varoquaux, G., Poline, J.B., Greicius, M., Thirion, B.: Transport on riemannian manifold for functional connectivity-based classification. In: Golland, P., Hata, N., Barillot, C., Hornegger, J., Howe, R. (eds.) MICCAI 2014. LNCS, vol. 8674, pp. 405–412. Springer, Cham (2014). doi:10.1007/978-3-319-10470-6_51

    Google Scholar 

  9. Nickisch, H., Rasmussen, C.: Approximations for binary gaussian process classification. J. Mach. Learn. Res. 9, 2035–2078 (2008)

    MathSciNet  MATH  Google Scholar 

  10. Pennec, X., Fillard, P., Ayache, N.: A riemannian framework for tensor computing. Int. J. Comput. Vis. 66(1), 41–66 (2006)

    Article  MATH  Google Scholar 

  11. Pettersson-Yeo, W., Allen, P., Benetti, S., McGuire, P., Mechelli, A.: Dysconnectivity in schizophrenia: where are we now? Neurosci. Biobehav. Rev. 35(5), 1110–1124 (2011)

    Article  Google Scholar 

  12. Rasmussen, C.E., Williams, C.K.I.: Gaussian Processes for Machine Learning. MIT Press, Cambridge (2006)

    MATH  Google Scholar 

  13. Sarpal, D.K., Robinson, D.G., Lencz, T., Argyelan, M., Ikuta, T., Karlsgodt, K., Gallego, J.A., Kane, J.M., Szeszko, P.R., Malhotra, A.K.: Antipsychotic treatment and functional connectivity of the striatum in first-episode schizophrenia. JAMA Psych. 72(1), 5–13 (2015)

    Article  Google Scholar 

  14. Smith, S.M., Miller, K.L., Salimi-Khorshidi, G., Webster, M., Beckmann, C.F., Nichols, T.E., Ramsey, J.D., Woolrich, M.W.: Network modelling methods for FMRI. Neuroimage 54(2), 875–891 (2011)

    Article  Google Scholar 

  15. Sra, S.: Positive definite matrices and the S-divergence, October 2011. arXiv:1110.1773 [math, stat]

  16. Tzourio-Mazoyer, N., Landeau, B., Papathanassiou, D., Crivello, F., Etard, O., Delcroix, N., Mazoyer, B., Joliot, M.: Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain. Neuroimage 15(1), 273–289 (2002)

    Article  Google Scholar 

  17. Zhang, J., Wang, L., Zhou, L., Li, W.: Learning discriminative stein kernel for SPD matrices and its applications. IEEE Trans. Neural Netw. Learn. Syst. 27(5), 1020–1033 (2016)

    Article  MathSciNet  Google Scholar 

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Correspondence to Jonathan Young .

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Young, J., Lei, D., Mechelli, A. (2017). Discriminative Log-Euclidean Kernels for Learning on Brain Networks. In: Wu, G., Laurienti, P., Bonilha, L., Munsell, B. (eds) Connectomics in NeuroImaging. CNI 2017. Lecture Notes in Computer Science(), vol 10511. Springer, Cham. https://doi.org/10.1007/978-3-319-67159-8_4

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  • DOI: https://doi.org/10.1007/978-3-319-67159-8_4

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