Abstract
Endophytic actinobacteria have been proven to be effective partners that have beneficial functions with a number of crop plants. A large number of studies have been carried out, showing these positive effects in laboratories and glasshouses, but with fewer reports of their effectiveness in the field. This chapter highlights the results of field trials of actinobacterial endophytes conducted with cereals, vegetables such as tomato, cucumber, or cabbage, legumes such as chickpea or pea, fruits such as melon or grapes, peanuts, and woody plants.
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References
Adhikari TB, Gurung S, Hansen JM, Bonman JM (2012) Pathogenic and genetic diversity of Xanthomonas translucens pv. undulosa in North Dakota. Phytopathology 102(4):390–402
Akarapisan A, Bhromsiri A, Sangmanee P (2008) Selection of suitable isolates of endophytic actinomycetes and rhizobia for improvement of N2 fixation and disease control of various Pisum sativum on the highland area. Asian J Food Agro-Ind 5:799–806
Alabouvette C, Olivain C, Steinberg C (2006) Biological control of plant diseases: the european situation. Eur J Plant Pathol 114(3):329–341
Araujo R (2010) Endemism versus dispersion: contribution of microbial genetics for forensic evidences. Open Foren Sci J 3:14–21
Araujo R, Amorim A, Gusmão L (2009) Microbial forensics: Do Aspergillus fumigatus strains present local or regional differentiation? Foren Sci Int: Genet Suppl Ser 2(1):297–299
Atidrivon D (1995) Biology, ecology, and epidemiology of the potato late blight pathogen Phytophthora infestans in soil. Phytopathology 85:1053–1056
Bai Y, D'Aoust F, Smith DL, Driscoll BT (2002) Isolation of plant-growth-promoting Bacillus strains from soybean root nodules. Can J Microbiol 48(3):230–238
Barabaschi D, Tondelli A, Desiderio F, Volante A, Vaccino P, Vale G, Cattivelli L (2016) Next generation breeding. Plant Sci 242:3–13
Beauséjour J, Clermont N, Beaulieu C (2003) Effect of Streptomyces melanosporofaciens strain EF-76 and of chitosan on common scab of potato. Plant Soil 256(2):463–468
Berdy J (2005) Bioactive microbial metabolites. J Antibiotics (Tokyo) 58(1):1–26
Bergougnoux V (2014) The history of tomato: From domestication to biopharming. Biotechnol Adv 32(1):170–189
Boukaew S, Chuenchit S, Petcharat V (2011) Evaluation of Streptomyces spp. for biological control of Sclerotium root and stem rot and Ralstonia wilt of chilli pepper. Biocontrol 56(3):365–374
Bubici G, Marsico AD, D’Amico M, Amenduni M, Cirulli M (2013) Evaluation of Streptomyces spp. for the biological control of corky root of tomato and Verticillium wilt of eggplant. Appl Soil Ecol 72:128–134
Bulgarelli D, Rott M, Schlaeppi K, Loren Ver, van Themaat E, Ahmadinejad N, Assenza F, Rauf P, Huettel B, Reinhardt R, Schmelzer E, Peplies J, Gloeckner FO, Amann R, Eickhorst T, Schulze-Lefert P (2012) Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota. Nature 488(7409):91–95
Charmet G (2011) Wheat domestication: lessons for the future. C R Biol 334(3):212–220
Chauhan PS, Puri N, Sharma P, Gupta N (2012) Mannanases: microbial sources, production, properties and potential biotechnological applications. Appl Microbiol Biotechnol 93(5):1817–1830
Chen W, Wellings C, Chen X, Kang Z, Liu T (2014) Wheat stripe (yellow) rust caused by Puccinia striiformis f. sp. tritici. Mol. Plant Pathol 15(5):433–446
Chen X, Pizzatti C, Bonaldi M, Saracchi M, Erlacher A, Kunova A, Berg G, Cortesi P (2016) Biological control of lettuce drop and host plant colonization by rhizospheric and endophytic Streptomycetes. Front Microbiol 7:714
Chung WC, Huang JW, Huang HC (2005) Formulation of a soil biofungicide for control of damping-off of Chinese cabbage (Brassica chinensis) caused by Rhizoctonia solani. Biol Control 32(2):287–294
Conn VM, Franco CM (2004) Effect of microbial inoculants on the indigenous actinobacterial endophyte population in the roots of wheat as determined by terminal restriction fragment length polymorphism. Appl Environ Microbiol 70(11):6407–6413
Coombs JT, Franco CM (2003) Isolation and identification of actinobacteria from surface-sterilized wheat roots. Appl Environ Microbiol 69(9):5603–5608
Cuppels DA, Higham J, Traquair JA (2013) Efficacy of selected streptomycetes and a streptomycete + pseudomonad combination in the management of selected bacterial and fungal diseases of field tomatoes. Biol Control 67(3):361–372
Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H, Read ND, Lee YH, Carbone I, Brown D, Oh YY, Donofrio N, Jeong JS, Soanes DM, Djonovic S, Kolomiets E, Rehmeyer C, Li W, Harding M, Kim S, Lebrun MH, Bohnert H, Coughlan S, Butler J, Calvo S, Ma LJ, Nicol R, Purcell S, Nusbaum C, Galagan JE, Birren BW (2005) The genome sequence of the rice blast fungus Magnaporthe grisea. Nature 434(7036):980–986
Dias JS, Ferreira ME, Williams PH (1993) Screening of Portuguese cole landraces (Brassica oleracea L.) with Peronospora parasitica and Plasmodiophora brassicae. Euphytica 67(1):135–141
Donald K, Andy H, Sina A, Margaret S, Kristin F (2009) Organic seed treatments tested in barley production. http://www.organicagcentre.ca/Docs/TechnicalBulletins09/E2009-33OrganicBarley.pdf
Duczek LJ, Verma PR, Spurr DT (1985) Effect of inoculum density of Cochliobolus sativus on common root rot of wheat and barley. Can J Plant Pathol 7(4):382–386
Edwards J, Johnson C, Santos-Medellin C, Lurie E, Podishetty NK, Bhatnagar S, Eisen JA, Sundaresan V (2015) Structure, variation, and assembly of the root-associated microbiomes of rice. Proc Natl Acad Sci USA 112(8):E911–E920
El-Tarabily KA, Nassar AH, Hardy GE, Sivasithamparam K (2009) Plant growth promotion and biological control of Pythium aphanidermatum, a pathogen of cucumber, by endophytic actinomycetes. J Appl Microbiol 106(1):13–26
El-Tarabily KA, Hardy GE, Giles E, Sivasithamparam K (2010) Performance of three endophytic actinomycetes in relation to plant growth promotion and biological control of Pythium aphanidermatum, a pathogen of cucumber under commercial field production conditions in the United Arab Emirates. Eur J Plant Pathol 128(4):527–539
FAOSTAT (2014) http://faostat.fao.org/site/567/DesktopDefault.aspx - ancor, accessed, from http://faostat.fao.org/site/567/DesktopDefault.aspx - ancor
Franco C, Michelsen P, Percy N, Conn V, Listiana E, Moll S, Loria R, Coombs J (2007) Actinobacterial endophytes for improved crop performance. Australas Plant Pathol 36(6):524–531
Friesen TL, Meinhardt SW, Faris JD (2007) The Stagonospora nodorum-wheat pathosystem involves multiple proteinaceous host-selective toxins and corresponding host sensitivity genes that interact in an inverse gene-for-gene manner. Plant J 51(4):681–692
Gangwar M, Rani S, Sharma N (2012) Investigating endophytic actinomycetes diversity from rice for plant growth promoting and antifungal activity. J Adv Life Sci 1:10–21
Gao AG, Hakimi SM, Mittanck CA, Wu Y, Woerner BM, Stark DM, Shah DM, Liang J, Rommens CM (2000) Fungal pathogen protection in potato by expression of a plant defensin peptide. Nat Biotechnol 18(12):1307–1310
Gay PA, Tuzun S (2000) Temporal and spatial assessment of defense responses in resistant and susceptible cabbage varieties during infection with Xanthomonas campestris pv. campestris. Physiol Mol Plant Pathol 57(5):201–210
Gopalakrishnan S, Pande S, Sharma M, Humayun P, Kiran BK, Sandeep D, Vidya MS, Deepthi K, Rupela O (2011) Evaluation of actinomycete isolates obtained from herbal vermicompost for the biological control of Fusarium wilt of chickpea. Crop Protec 30(8):1070–1078
Gopalakrishnan S, Srinivas V, Alekhya G, Prakash B (2015a) Effect of plant growth-promoting Streptomyces sp. on growth promotion and grain yield in chickpea (Cicer arietinum L). Biotech 5(5):799–806
Gopalakrishnan S, Srinivas V, Alekhya G, Prakash B, Kudapa H, Varshney RK (2015b) Evaluation of Streptomyces sp. obtained from herbal vermicompost for broad spectrum of plant growth-promoting activities in chickpea. Org Agric 5(2):123–133
Guo YL, Ge S (2005) Molecular phylogeny of Oryzeae (Poaceae) based on DNA sequences from chloroplast, mitochondrial, and nuclear genomes. Am J Bot 92(9):1548–1558
Hardwick NV, Jones DR, Slough JE (2001) Factors affecting diseases of winter wheat in England and Wales, 1989–98. Plant Pathol 50(5):650–652
Hata EM, Sijam K, Ahmad ZAM, Yusof MT, Azman NA (2015) In vitro antimicrobial assay of actinomycetes in rice against Xanthomonas oryzae pv. oryzicola and as potential plant growth promoter. Brazilian Arch Biol Technol 58:821–832
Intra B, Mungsuntisuk I, Nihira T, Igarashi Y, Panbangred W (2011) Identification of actinomycetes from plant rhizospheric soils with inhibitory activity against Colletotrichum spp., the causative agent of anthracnose disease. BMC Res Notes 4:98
Ji SH, Gururani MA, Chun SC (2014) Isolation and characterization of plant growth promoting endophytic diazotrophic bacteria from Korean rice cultivars. Microbiol Res 169(1):83–98
Kaewkla O, Franco CM (2013) Rational approaches to improving the isolation of endophytic actinobacteria from Australian native trees. Microb Ecol 65(2):384–393
Kampapongsa D, Kaewkla O (2016) Biodiversity of endophytic actinobacteria from jasmine rice (Oryza sativa L. KDML 105) grown in Roi-Et Province, Thailand and their antimicrobial activity against rice pathogens. Ann Microbiol 66(2):587–595
Lahdenperae ML, Simon E, Uoti J (1991) Mycostop - a novel biofungicide based on Streptomyces bacteria. Biotic interactions and soil-borne diseases: proceedings of the first conference on the European Foundation for Plant Pathology, pp 258–263
Lee SW, Han SW, Sririyanum M, Park CJ, Seo YS, Ronald PC (2013) Retraction. A type I-secreted, sulfated peptide triggers XA21-mediated innate immunity. Science 342(6155):191
Lievens B, Brouwer M, Vanachter ACRC, Cammue BPA, Thomma BPHJ (2006) Real-time PCR for detection and quantification of fungal and oomycete tomato pathogens in plant and soil samples. Plant Sci 171(1):155–165
Liu B, Huang L, Kang Z, Buchenauer H (2011) Evaluation of endophytic bacterial strains as antagonists of take-all in wheat caused by Gaeumannomyces graminis var. tritici in greenhouse and field. J Pest Sci 84(3):257–264
Liu W, Liu J, Triplett L, Leach JE, Wang GL (2014) Novel insights into rice innate immunity against bacterial and fungal pathogens. Ann Rev Phytopathol 52:213–241
Martinez-Hidalgo P, Galindo-Villardon P, Trujillo ME, Igual JM, Martinez-Molina E (2014) Micromonospora from nitrogen-fixing nodules of alfalfa (Medicago sativa L.). A new promising Plant Probiotic Bacteria. Sci Rep 4(6389)
McMullen M, Jones R, Gallenberg D (1997) Scab of wheat and barley: a re-emerging disease of devastating impact. Plant Dis 81(12):1340–1348
Murakami H, Tsushima S, Shishido Y (2000) Soil suppressiveness to clubroot disease of Chinese cabbage caused by Plasmodiophora brassicae. Soil Biol Biochem 32(11–12):1637–1642
Naik BS, Shashikala J, Krishnamurthy YL (2009) Study on the diversity of endophytic communities from rice (Oryza sativa L.) and their antagonistic activities in vitro. Microbiol Res 164(3):290–296
Obradovic A, Jones JB, Momol MT, Balogh B, Olson SM (2004) Management of tomato bacterial spot in the field by foliar applications of bacteriophages and SAR inducers. Plant Dis 88(7):736–740
Orakçı GE, Yamaç M, Amoroso MJ, Cuozzo SA (2010) Selection of antagonistic actinomycete isolates as biocontrol agents against root-rot fungi. Fresenius Environ Bull 19(3):417–424
Osborne LE, Stein JM (2007) Epidemiology of Fusarium head blight on small-grain cereals. Int J Food Microbiol 119(1–2):103–108
Pane C, Celano G, Villecco D, Zaccardelli M (2012) Control of Botrytis cinerea, Alternaria alternata and Pyrenochaeta lycopersici on tomato with whey compost-tea applications. Crop Protec 38:80–86
Pane C, Piccolo A, Spaccini R, Celano G, Villecco D, Zaccardelli M (2013) Agricultural waste-based composts exhibiting suppressivity to diseases caused by the phytopathogenic soil-borne fungi Rhizoctonia solani and Sclerotinia minor. Appl Soil Ecol 65:43–51
Pourkheirandish M, Komatsuda T (2007) The importance of barley genetics and domestication in a global perspective. Ann Bot 100(5):999–1008
Prévost K, Couture G, Shipley B, Brzezinski R, Beaulieu C (2006) Effect of chitosan and a biocontrol streptomycete on field and potato tuber bacterial communities. Biocontrol 51:533–546
Priya CS, Kalaichelvan PT (2011) Strategies for antagonistic activity of local actinomycete isolates against rice fungal pathogens. Asian J Exo Biol Sci 2:648–653
Quintana-Jones TA (2011) Evaluation of drip applications and foliar sprays of the biocontrol product Actinovate on powdery mildew and other fungal diseases of tomato. Faculty of California Polytechnic State University, San Luis Obispo
Ratnadass A, Fernandes P, Avelino J, Habib R (2012) Plant species diversity for sustainable management of crop pests and diseases in agroecosystems: a review. Agron Sustain Dev 32(1):273–303
Raza W, Ling N, Zhang R, Huang Q, Xu Y, Shen Q (2016) Success evaluation of the biological control of Fusarium wilts of cucumber, banana, and tomato since 2000 and future research strategies. Crit Rev Biotechnol 1–11
Sangmanee P, Bhromsiri A, Akarapisan A (2009) The potential of endophytic actinomycetes, (Streptomyces sp.) for the biocontrol of powdery mildew disease in sweet pea (Pisum sativum). Asian J Food Agro-Ind (Special Issue):93–98
Schrey SD, Tarkka MT (2008) Friends and foes: streptomycetes as modulators of plant disease and symbiosis. Antonie Van Leeuwenhoek 94(1):11–19
Shepardson S, Esau K, McCrum R (1980) Ultrastructure of potato leaf phloem infected with potato leafroll virus. Virology 105(2):379–392
Shi G, Liang Y, Yao X, Zeng R, Mu L (2013) Effects of actinomycetes on yields and qualities of tomato and pepper under different for crops. Bull Soil Water Cons 1:055
Shilling D, Lowell C Tomato University trials, University of Florida, US, accessed, from https://sepixa.com/wp-content/pdf/tomato.pdf
Smith O, Clapham A, Rose P, Liu Y, Wang J, Allaby RG (2014) A complete ancient RNA genome: identification, reconstruction and evolutionary history of archaeological barley stripe mosaic virus. Sci Rep 4:4003
Soe KM, Yamakawa T (2013) Low-density co-inoculation of Myanmar Bradyrhizobium yuanmingense MAS34 and Streptomyces griseoflavus P4 to enhance symbiosis and seed yield in soybean varieties. Am J Plant Sci 4:1879–1892
Soe KM, Bhromsiri A, Karladee D, Yamakawa T (2012) Effects of endophytic actinomycetes and Bradyrhizobium japonicum strains on growth, nodulation, nitrogen fixation and seed weight of different soybean varieties. Soil Sci Plant Nutr Soil Science and Plant Nutrition 58:319–325
Spadaro D, Gullino ML (2005) Improving the efficacy of biocontrol agents against soilborne pathogens. Crop Protec 24(7):601–613
Sreevidya M, Gopalakrishnan S, Melø TM, Simic N, Bruheim P, Sharma M, Srinivas V, Alekhya G (2015) Biological control of Botrytis cinerea and plant growth promotion potential by Penicillium citrinum in chickpea (Cicer arietinum L.). Biocontr. Sci Technol 25(7):739–755
Suprapta DN (2012) Potential of microbial antagonists as biocontrol agents against plant pathogens. J ISSAAS 18(2):1–8
Thapanapongworakul P (2003) Characterization of endophytic actinomycetes capable of controlling sweet pea root rot diseases and effects on root nodule bacteria. Master’’ dissertation. Chiang Mai University, Thailand
Thomas SH, Murray LW, Cardenas M (1995) Relationship of pre-plant population densities of Meloidogyne incognita to damage in three chile pepper cultivars. Plant Dis 79:557–559
Tian XL, Cao LX, Tan HM, Zeng QG, Jia YY, Han WQ, Zhou SN (2004) Study on the communities of endophytic fungi and endophytic actinomycetes from rice and their antipathogenic activities in vitro. World J Microbiol Biotechnol 20(3):303–309
Tokala RK, Strap JL, Jung CM, Crawford DL, Salove MH, Deobald LA, Bailey JF, Morra MJ (2002) Novel plant-microbe rhizosphere interaction involving Streptomyces lydicus WYEC108 and the pea plant (Pisum sativum). Appl Environ Microbiol 68(5):2161–2171
Turkington TK, Orr DD, Clear RM, Patrick SK, Burnett PA, Xi K (2002) Fungal plant pathogens infecting barley and wheat seed from Alberta, 1995-1997. Can J Plant Pathol 24(3):302–308
Valkonen JPT, Koponen H (1990) The seed-borne fungi of Chinese cabbage (Brassica pekinensis), their pathogenicity and control. Plant Pathol 39(3):510–516
Valois D, Fayad K, Barasubiye T, Garon M, Dery C, Brzezinski R, Beaulieu C (1996) Glucanolytic actinomycetes antagonistic to Phytophthora fragariae var. rubi, the causal agent of raspberry root rot. Appl Env Microbiol 62(5):1630–1635
Van Hop D, Phuong Hoa PT, Quang ND, Ton PH, Ha TH, Van Thi N, Van Hai T, Kim Quy NT, Anh Dao NT, Thom VT (2014) Biocontrol Sci 19:103–111
Xu XM, Jeger MJ (2013) Combined use of two biocontrol agents with different biocontrol mechanisms most likely results in less than expected efficacy in controlling foliar pathogens under fluctuating conditions: a modeling study. Phytopathology 103(2):108–116
Yang C, Hamel C, Gan Y, Vujanovic V (2012) Bacterial endophytes mediate positive feedback effects of early legume termination times on the yield of subsequent durum wheat crops. Can J Microbiol 58(12):1368–1377
Yuan WM, Crawford DL (1995) Characterization of Streptomyces lydicus WYEC108 as a potential biocontrol agent against fungal root and seed rots. Appl Environ Microbiol 61(8):3119–3128
Zhan J, Fitt BDL, Pinnschmidt HO, Oxley SJP, Newton AC (2008) Resistance, epidemiology and sustainable management of Rhynchosporium secalis populations on barley. Plant Pathol 57(1):1–14
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Araujo, R., Kaewkla, O., Franco, C.M. (2017). Endophytic Actinobacteria: Beneficial Partners for Sustainable Agriculture. In: Maheshwari, D. (eds) Endophytes: Biology and Biotechnology. Sustainable Development and Biodiversity, vol 15. Springer, Cham. https://doi.org/10.1007/978-3-319-66541-2_8
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