Skip to main content

Genetic Stocks Used for Potato Genome Sequencing

  • Chapter
  • First Online:
The Potato Genome

Part of the book series: Compendium of Plant Genomes ((CPG))

Abstract

Potato is a highly heterozygous and tetraploid crop and therefore it was a major challenge to decipher the potato genome. This chapter highlights the developmental stories of the potato genetic stock used for the whole genome sequencing by the Potato Genome Sequencing Consortium (PGSC).

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 109.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 139.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Campbell R, Pont SDA, Morris JA, McKenzie G, Sharma SK, Hedley PE, Ramsay G, Bryan GJ, Taylor MA (2014) Genome-wide QTL and bulked transcriptomic analysis reveals new candidate genes for the control of tuber carotenoid content in potato (Solanum tuberosum L.). Theor Appl Genet 127(9):1917–1933

    Article  CAS  PubMed  Google Scholar 

  • Charfeddine S, Saidi MN, Charfeddine M, Gargouri-Bouzid R (2015) Genome-wide identification and expression profiling of the late embryogenesis abundant genes in potato with emphasis on dehydrins. Mol Biol Rep 42:1163–1174

    Article  CAS  PubMed  Google Scholar 

  • De Vries SE, Ferwerda MA, Loonen A, Pijnacker LP, Feenstra WJ (1987) Chromosomes in somatic hybrids between Nicotiana plumbaginifolia and a monoploid potato. Theor Appl Genet 75(1):170–176

    Article  Google Scholar 

  • Gao JP, Cao XL, Shi SD, Ma YL, Wang K, Liu SJ, Chen D, Chen Q, Ma HL (2016) Genome-wide survey of Aux/IAA gene family members in potato (Solanum tuberosum): Identification, expression analysis, and evaluation of their roles in tuber development. Biochem Biophys Res Commun 471(2):320–327

    Article  CAS  PubMed  Google Scholar 

  • Glendinning DR (1975) Neo-tuberosum: new potato breeding material. 2. A comparison of neo-tuberosum with unselected Andigena and with Tuberosum. Potato Res 18(3):343–350

    Article  Google Scholar 

  • Golmirzaie AM, Bretschneider K, Ortiz R (1998a) Inbreeding and true seed in tetrasomic potato. II. Selfing and sib-mating in heterogeneous hybrid populations of Solanum tuberosum. Theor Appl Genet 97(7):1129–1132

    Article  Google Scholar 

  • Golmirzaie AM, Ortiz R, Atlin GN, Iwanaga M (1998b) Inbreeding and true seed in tetrasomic potato. I. Selfing and open pollination in Andean landraces (Solanum tuberosum Gp. Andigena). Theor Appl Genet 97(7):1125–1128

    Article  Google Scholar 

  • Gong L, Zhang HX, Gan XY, Zhang L, Chen YC, Nie FJ, Shi L, Li M, Guo ZQ, Zhang GH, Song YX (2015) Transcriptome profiling of the potato (Solanum tuberosum L.) plant under drought stress and water-stimulus conditions. PLoS ONE 10(5):e0128041

    Article  PubMed  PubMed Central  Google Scholar 

  • Goyer A, Hamlin L, Crosslin JM, Buchanan A, Chang JH (2015) RNA-seq analysis of resistant and susceptible potato varieties during the early stages of potato virus Y infection. BMC Genom 16:472

    Article  Google Scholar 

  • Hagberg A, Tedin O (1951) Inter- and intraclonal crosses and inbreeding in potatoes. Hereditas 37(1–2):280–287

    Google Scholar 

  • Hardigan MA, Crisovan E, Hamilton JP, Kim J, Laimbeer P, Leisner CP, Manrique-Carpintero NC, Newton L, Pham GM, Vaillancourt B, Yang XM, Zeng ZX, Douches DS, Jiang JM, Veilleux RE, Buell CR (2016) Genome reduction uncovers a large dispensable genome and adaptive role for copy number variation in asexually propagated Solanum tuberosum. Plant Cell 28(2):388–405

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Haynes FL (1972) The use of cultivated diploid Solanum species in potato breeding. In: French ER (ed) Prospects for the potato in the developing world: an international symposium on key problems and potentials for greater use of the potato in the developing world, Lima, Peru. International Potato Center (CIP), pp 100–110

    Google Scholar 

  • Huáman Z, Spooner DM (2002) Reclassification of landrace populations of cultivated potatoes (Solanum sect. Petota). Am J Bot 89(6):947–965

    Article  PubMed  Google Scholar 

  • Huarte MA, Plaisted RL (1984) Selection for tuberosum likeness in the vines and in the tubers in a population of Neotuberosum. Am Potato J 61(8):461–473

    Article  Google Scholar 

  • Hulme JS, Higgins ES, Shields R (1992) An efficient genotype-independent method for regeneration of potato plants from leaf tissue. Plant Cell Tiss Org Cult 31(2):161–167

    Article  CAS  Google Scholar 

  • Hutten RCB, Soppe WJJ, Hermsen JGT, Jacobsen E (1995) Evaluation of dihaploid populations from potato varieties and breeding lines. Potato Res 38(1):77–86

    Article  Google Scholar 

  • Johnson AAT, Piovano SM, Ravichandran V, Veilleux RE (2001) Selection of monoploids for protoplast fusion and generation of intermonoploid somatic hybrids of potato. Am J Potato Res 78(1):19–29

    Article  CAS  Google Scholar 

  • Krantz EA (1946) Potato breeding methods. III. A suggested procedure for potato breeding. Bulletin of Minnesota Agricultural Experimental Station No. 173

    Google Scholar 

  • Lightbourn GJ, Veilleux RE (2007) Production and evaluation of somatic hybrids derived from monoploid potato. Am J Potato Res 84(5):425–435

    Article  Google Scholar 

  • Liu BL, Zhang N, Wen YK, Jin X, Yang JW, Si HJ, Wang D (2015) Transcriptomic changes during tuber dormancy release process revealed by RNA sequencing in potato. J Biotechnol 198:17–30

    Article  CAS  PubMed  Google Scholar 

  • Lough RC, Varrieur JM, Veilleux RE (2001) Selection inherent in monoploid derivation mechanisms for potato. Theor Appl Genet 103(1):178–184

    Article  CAS  Google Scholar 

  • M’Ribu HK, Veilleux R (1992) Fertility of doubled monoploids of Solanum phureja. Am Potato J 69(7):447–459

    Article  Google Scholar 

  • Ma HL, Cao XL, Shi SD, Li SL, Gao JP, Ma YL, Zhao Q, Chen Q (2016) Genome-wide survey and expression analysis of the amino acid transporter superfamily in potato (Solanum tuberosum L.). Plant Physiol Biochem 107:164–177

    Article  CAS  PubMed  Google Scholar 

  • Morris WL, Hancock RD, Ducreux LJM, Morris JA, Usman M, Verrall SR, Sharma SK, Bryan G, McNicol JW, Hedley PE, Taylor MA (2014) Day length dependent restructuring of the leaf transcriptome and metabolome in potato genotypes with contrasting tuberization phenotypes. Plant Cell Environ 37(6):1351–1363

    Article  CAS  PubMed  Google Scholar 

  • Paz MM, Veilleux RE (1997) Genetic diversity based on randomly amplified polymorphic DNA (RAPD) and its relationship with the performance of diploid potato hybrids. J Am Soc Hort Sci 122(6):740–747

    CAS  Google Scholar 

  • Paz MM, Veilleux RE (1999) Influence of culture medium and in vitro conditions on shoot regeneration in Solanum phureja monoploids and fertility of regenerated doubled monoploids. Plant Breed 118(1):53–57

    Article  CAS  Google Scholar 

  • Rokka VM (2009) Potato Haploids and Breeding. In: Touraev A, Forster BP, Jain SM (eds) Advances in haploid production in higher plants. Springer, New York, pp 199–208

    Chapter  Google Scholar 

  • Schreiber L, Nader-Nieto AC, Schonhals EM, Walkemeier B, Gebhardt C (2014) SNPs in genes functional in starch-sugar interconversion associate with natural variation of tuber starch and sugar content of potato (Solanum tuberosum L.). G3: genes|genomes |. Genetics 4(10):1797–1811

    CAS  Google Scholar 

  • Seo E, Kim S, Yeom SI, Choi D (2016) Genome-wide comparative analyses reveal the dynamic evolution of nucleotide-binding leucine-rich repeat gene family among Solanaceae plants. Front Plant Sci 7:1205

    Article  PubMed  PubMed Central  Google Scholar 

  • Sharma SK, Bolser D, de Boer J, Sønderkær M, Amoros W, Carboni MF, D’Ambrosio JM, de la Cruz G, Di Genova A et al (2013) Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps. G3: Genes|Genomes|Genetics 3:2031–2047

    Google Scholar 

  • Spooner DM, Núñez J, Trujillo G, Herrera MD, Guzmán F, Ghislain M (2007) Extensive simple sequence repeat genotyping of potato landraces supports a major reevaluation of their gene pool structure and classification. Proc Nat Acad Sci USA 104(49):19398–19403

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tang X, Datema E, Guzman MO, de Boer JM, van Eck HJ, Bachem CWB, Visser RGF, de Jong H (2014) Chromosomal organizations of major repeat families on potato (Solanum tuberosum) and further exploring in its sequenced genome. Mol Genet Genomics 289(6):1307–1319

    Article  CAS  PubMed  Google Scholar 

  • Tang RM, Zhu WJ, Song XY, Lin XZ, Cai JH, Wang M, Yang Q (2016) Genome-wide identification and function analyses of heat shock transcription factors in potato. Front Plant Sci 7:490

    PubMed  PubMed Central  Google Scholar 

  • Taylor TE, Veilleux RE (1992) Inheritance of competences for leaf disk regeneration, anther culture, and protoplast culture In Solanum phureja and correlations among them. Plant Cell Tiss Org Cult 31(2):95–103

    Article  Google Scholar 

  • The Potato Genome Sequencing Consortium (2011) Genome sequence and analysis of the tuber crop potato. Nature 475(7355):189–195

    Article  Google Scholar 

  • Uijtewaal BA, Huigen DJ, Hermsen JG (1987a) Production of potato monohaploids (2n = x =12) through prickle pollination. Theor Appl Genet 73(5):751–758

    Article  CAS  PubMed  Google Scholar 

  • Uijtewaal BA, Jacobsen E, Hermsen JGT (1987b) Morphology and vigor of monohaploid potato clones, their corresponding homozygous diploids and tetraploids and their heterozygous diploid parent. Euphytica 36(3):745–753

    Article  Google Scholar 

  • Van Harsselaar JK, Lorenz J, Senning M, Sonnewald U, Sonnewald S (2017) Genome-wide analysis of starch metabolism genes in potato (Solanum tuberosum L.). BMC Genomics 18

    Google Scholar 

  • Veilleux RE, Booze-Daniels J, Pehu E (1985) Anther culture of a 2n pollen producing clone of Solanum phureja Juz. and Buk. Can J Genet Cytol 27(5):559–564

    Google Scholar 

  • Veilleux RE, Lauer FI (1981) Breeding behavior of yield components and hollow heart in tetraploid-diploid vs conventionally derived potato hybrids. Euphytica 30(3):547–561

    Article  Google Scholar 

  • Veilleux RE, Shen LY, Paz MM (1995) Analysis of the genetic composition of anther-derived potato by randomly amplified polymorphic DNA and simple sequence repeats. Genome 38(6):1153–1162

    Article  CAS  PubMed  Google Scholar 

  • Wenzel G, Schieder O, Przewozny T, Sopory SK, Melchers G (1979) Comparison of single cell-culture derived Solanum tuberosum L. plants and a model for their application in breeding programs. Theor Appl Genet 55(2):49–55

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Richard E. Veilleux .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer International Publishing AG

About this chapter

Check for updates. Verify currency and authenticity via CrossMark

Cite this chapter

Veilleux, R.E. (2017). Genetic Stocks Used for Potato Genome Sequencing. In: Kumar Chakrabarti, S., Xie, C., Kumar Tiwari, J. (eds) The Potato Genome. Compendium of Plant Genomes. Springer, Cham. https://doi.org/10.1007/978-3-319-66135-3_4

Download citation

Publish with us

Policies and ethics