Skip to main content
SpringerLink
Log in

Evolutionary Interaction Between Archaeal-Eukaryal Cell Lineages and Viruses

  • Chapter
  • First Online:
Biocommunication of Archaea

  • 1036 Accesses

Abstract

Eukarya is thought to have arisen from one of the archaeal lineages between 2500–2000 mya. Recently, various metagenomic data revealed that the diversity of the domain archaea is far more complicated than previously thought, and which archaeal lineage served as the ancestor of the eukaryal lineage is currently under heated debate. Many archaeal viruses have been isolated in the past couple of decades, and have shown us their extensive morphological diversity. On the other hand, so-called “giant viruses” infecting eukaryal cells have been isolated from various aquatic environments since 2003. Molecular phylogenetic analysis revealed that giant viruses and eukarya have evolved with the interaction with each other via horizontal gene transfer (HGT). Interaction between archaeal-eukaryal cell lineages and their viruses may provide clues to explain the origin of eukarya from the archaeal ancestors.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Log in via an institution
Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Abergel C, Legendre M, Claverie JM (2015) The rapidly expanding universe of giant viruses: Mimivirus, Pandoravirus, Pithovirus and Mollivirus. FEMS Microbiol. Rev. fuv037

    Google Scholar 

  • Andrade KR, Boratto PPVM, Rodrigues FP, Silva LCF, Dornas FP, Pilotto MR, La Scola B, Almeida GMF, Kroon EG, Abrahao JS (2015) Oysters as hot spots for Mimivirus isolation. Arch Virol 160:477–482

    Article  CAS  PubMed  Google Scholar 

  • Andreani J, Aherfi S, Khalil JYB, Pinto FD, Bitam I, Raoult D, Colson P, La Scola B (2016) Cedratvirus, a double-cork structured giant virus, is a distant relative of Pithoviruses. Viruses 8:300

    Article  PubMed Central  Google Scholar 

  • Archibald J (2014) One plus one equals one. Oxford University Press, Oxford

    Google Scholar 

  • Arnold HP, Ziese U, Zillig W (2000a) SNDV, a novel virus of the extremely thermophilic and acidophilic archaeon Sulfolobus. Virol 272:409–416

    Article  CAS  Google Scholar 

  • Arnold HP, Zillig W, Ziese U, Holz I, Crosby M, Utterback T, Weidmann JF, Kristjanson JK, Klenk HP, Nelson KE (2000b) A novel lipothrixvirus, SIFV, of the extremely thermophilic crenarchaeon Sulfolobus. Virol 267:252–266

    Article  CAS  Google Scholar 

  • Arslan D, Legendre M, Seltzer V, Abergel C, Claverie JM (2011) Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae. Proc Natl Acad Sci USA 108:17486–17491

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Assis FL, Bajrai L, Abrahao JS, Kroon EG, Dornas FP, Andrade KR, Boratto PVM, Pilotto MR, Robert C, Benamar S, La Scola B, Colson P (2015) Pan-genome analysis of Brazilian lineage A amoebal Mimiviruses. Viruses 7:3483–3499

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bamford DH, Ravantti JJ, Rönnholm G, Laurinavičius S, Kukkaro P, Dyall-Smith M, Somerharju P, Kalkkinen N, Bamford JKH (2005) Constituents of SH1, a novel lipid-containing virus infecting the halophilic euryarchaeon Haloarcula hispanica. J Virol 79:9097–9107

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Barns SM, Delwiche CF, Palmer JD, Pace NR (1996) Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc Natl Acad Sci USA 93:9188–9193

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bath C, Dyall-Smith ML (1998) His1, an Archaeal Virus of the Fuselloviridae family that infects Haloarcula hispanica. J Virol 72:9392–9395

    CAS  PubMed  PubMed Central  Google Scholar 

  • Bell PJL (2001) Viral eukaryogenesis: was the ancestor of the nucleus a complex DNA virus? J Mol Evol 53:251–256

    Article  CAS  PubMed  Google Scholar 

  • Bell PJL (2009) The viral eukaryogenesis hypothesis. Ann N Y Acad Sci 1178:91–105

    Article  CAS  PubMed  Google Scholar 

  • Boratto PVM, Arantes TS, Silva LCF, Assis FL, Kroon EG, La Scola B, Abrahao JS (2015) Niemeyer virus: a new Mimivirus group A isolate harboring a set of duplicated aminoacyl-tRNA synthetase genes. Front Microbiol 6:1256

    Article  PubMed  PubMed Central  Google Scholar 

  • Boyer M, Yutin N, Pagnier I, Barrassi L, Fournous G, Espinosa L, Robert C, Azza S, Sun S, Rossmann MG, Suzan-Monti M, La Scola B, Koonin EV, Raoult D (2009) Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms. Proc Natl Acad Sci USA 106:21848–21853

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Brochier-Armanet C, Boussau B, Gribaldo S, Forterre P (2008) Mesophilic Crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota. Nat Rev Microbiol 6:245–252

    Article  CAS  PubMed  Google Scholar 

  • Burgers PMJ (2009) Polymerase dynamics at the eukaryotic DNA replication fork. J Biol Chem 284:4041–4045

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Campos RK, Boratto PV, Assis FL, Aguiar ERGR, Silva LCF, Albarnaz JD, Dornas FP, Trindade GS, Ferreira PP, Marques JT, Robert C, Raoult D, Kroon EG, La Scola B, Abrahao JS (2014) Samba virus: a novel Mimivirus from a giant rain forest, the Brazilian Amazon. Virol J 11:95

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Cavalier-Smith T (1983) A 6-kingdom classification and a unified phylogeny. In: Schermmler W and Schenk HEA (ed) Endocytobiology II, edn. De Gruyter, Berlin, pp. 1027–1034

    Google Scholar 

  • Cavalier-Smith T (2010) Origin of the cell nucleus, mitosis and sex: roles of intracellular coevolution. Biol Direct 5:7

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Chaikeeratisak V, Nguyen K, Khanna K, Brilot AF, Erb ML, Coker JKC, Vavilina A, Newton GL, Buschauer R, Pogliano K, Villa E, Agard DA, Pogliano J (2017) Assembly of a nucleus-like structure during viral replication in bacteria. Science 355:194–197

    Article  CAS  PubMed  Google Scholar 

  • Chatterjee A, Ali F, Bange D, Kondabagil K (2016) Isolation and complete genome sequencing of Mimivirus bombay, a giant virus in sewage of Mumbai, India. Genomics Data 9:1–3

    Article  PubMed  PubMed Central  Google Scholar 

  • Claverie JM (2006) Viruses take center stage in cellular evolution. Genome Biol 7:110

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Colson P, de Lambellerie X, Fournous G, Raoult D (2012) Reclassification of giant viruses composing a fourth domain of life in the new order Megavirales. Intervirol 55:321–332

    Article  Google Scholar 

  • Colson P, Pagnier I, Yoosuf N, Fournous G, La Scola B, Raoult D (2013) “Marseilleviridae”, a new family of giant viruses infecting amoebae. Arch Virol 158:915–920

    Article  CAS  PubMed  Google Scholar 

  • Desnues C, La Scola B, Yutin N, Fournous G, Robert C, Azza S, Jardot P, Monteil S, Campocasso A, Koonin EV, Raoult D (2012) Provirophages and transpovirons as the diverse mobilome of giant viruses. Proc Natl Acad Sci USA 109:18078–18083

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Doolittle WF, Brown JR (1994) Tempo, mode, the progenote, and the universal root. Proc Natl Acad Sci USA 91:6721–6728

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dos Santos RN, Campos FS, de Albuquerque NRM, Finoketti F, Correa RA, Cano-Ortiz L, Assis FL, Arantes TS, Roehe PM, Franco AC (2016) A new marseillevirus isolated in Southern Brazil from Limnoperna fortunei. Sci Rep 6:35237

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Doutre G, Philippe N, Abergel C, Claverie JM (2014) Genome analysis of the first Marseilleviridae representative from Australia indicates that most of its genes contribute to virus fitness. J Virol 88:14340–14349

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Edgell DR, Malik S-B, Doolittle WF (1998) Evidence of independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases. Mol Biol Evol 15:1207–1217

    Article  CAS  PubMed  Google Scholar 

  • Elkins JG, Podar M, Graham DE, Makarova KS, Wolf Y, Randau L, Hedlund BP, Brochier-Armanet C, Kunin V, Anderson I, Lapidus A, Goltsman E, Barry K, Koonin EV, Hugenholtz P, Kyrpides N, Wanner G, Richardson P, Keller M, Stetter KO (2008) A korarchaeal genome reveals insights into the evolution of the Archaea. Proc Natl Acad Sci USA 105:8102–8107

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Embley TM, Martin W (2006) Eukaryotic evolution, changes and challenges. Nature 440:623–630

    Article  CAS  PubMed  Google Scholar 

  • Fischer MG, Allen MJ, Wilson WH, Suttle CA (2010) Giant virus with a remarkable complement of genes infects marine zooplankton. Proc Natl Acad Sci USA 107:19508–19513

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Forterre P, Prangishvili D (2009) The great billion-year war between ribosome- and capsid-encoding organisms (cells and viruses) as the major source of evolutionary novelties. Ann NY Acad Sci 1178:65–77

    Article  CAS  PubMed  Google Scholar 

  • Forterre P, Gaïa M (2016) Giant viruses and the origin of modern eukaryotes. Curr Opin Microbiol 31:44–49

    Article  PubMed  Google Scholar 

  • Fuerst JA, Sagulenko E (2012) Keys to eukaryality: planctomycetes and ancestral evolution of cellular complexity. Front Microbiol 3:167

    Article  PubMed  PubMed Central  Google Scholar 

  • Guy L, Ettema TJ (2011) The archaeal ‘TACK’ superphylum and the origin of eukaryotes. Trends Microbiol 19:580–587

    Article  CAS  PubMed  Google Scholar 

  • Hage AE, Tollervey D (2004) A surfeit of factors: why is ribosome assembly so much more complicated in eukaryotes than bacteria? RNA Biol 1:10–15

    Article  PubMed  Google Scholar 

  • Hallam SJ, Konstantinidis KT, Putnam N, Schleper C, Watanabe Y, Sugahara J, Preston C, de la Torre J, Richardson PM, DeLong EF (2006) Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Proc Natl Acad Sci USA 103:18296–18301

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Häring M, Peng X, Brügger K, Rachel R, Stetter KO, Garrett RA, Prangishvili D (2004) Morphology and genome organization of the virus PSV of the hyperthermophilic archaeal genera Pyrobaculum and Thermoproteus: a novel virus family, the Globuloviridae. Virol 323:233–242

    Article  CAS  Google Scholar 

  • Häring M, Vestergaard G, Rachel R, Chen LM, Garrett RA, Prangishvili D (2005a) Virology: independent virus development outside a host. Nature 436:1101–1102

    Article  PubMed  CAS  Google Scholar 

  • Häring M, Rachel R, Peng X, Garrett RA, Prangishvili D (2005b) Viral diversity in hot springs of Pozzuoli, Italy, and characterization of a unique archaeal virus, acidianus bottle-shaped virus, from a new family, the Ampullaviridae. J Virol 79:9904–9911

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Horiike T, Hamada K, Kanaya S, Shinozawa T (2001) Origin of eukaryotic cell nuclei by symbiosis of archaea in bacteria is revealed by homology-hit analysis. Nat Cell Biol 3:210–214

    Article  CAS  PubMed  Google Scholar 

  • Hübscher U, Maga G, Spadari S (2002) Eukaryotic DNA polymerases. Annu Rev Biochem 71:133–163

    Article  PubMed  CAS  Google Scholar 

  • Iyer LM, Aravind L, Koonin EV (2001) Common origin of four diverse families of large eukaryotic DNA viruses. J Virol 75:11720–11734

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Iyer LM, Balaji S, Koonin EV, Aravind L (2006) Evolutionary genomics of nucleo-cytoplasmic large DNA viruses. Virus Res 117:156–184

    Article  CAS  PubMed  Google Scholar 

  • Janekovic D, Wunderl S, Holz I, Zillig W, Gierl A, Neumann H (1983) TTV1, TTV2 and TTV3, a family of viruses of the extremely thermophilic, anaerobic, sulfur reducing archaebacterium Thermoproteus tenax. Mol Gen Genet 192:39–45

    Article  CAS  Google Scholar 

  • Kaniak-Golik A, Skoneczna A (2015) Mitochondria-nucleus network for genome stability. Free Rad Biol Med 82:73–104

    Article  CAS  PubMed  Google Scholar 

  • King AM, Adams MJ, Carstens EB, Lefkowitz EJ (eds) (2012) Virus taxonomy: classification and nomenclature of viruses: ninth report of the International Committee on taxonomy of viruses. Elsevier, London-Waltham-San Diego

    Google Scholar 

  • Könneke M, Bernhard AE, de la Torre JR, Walker CB, Waterbury JB, Stahl DA (2005) Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437:543–546

    Article  PubMed  CAS  Google Scholar 

  • Kuznetsov Y, Klose T, Rossmann M, McPherson A (2013) Morphogenesis of Mimivirus and its viral factories: an atomic force microscopy study of infected cells. J Virol 87:11200–11213

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lake JA, Henderson E, Oakes M, Clark MW (1984) Eocytes: a new ribosome structure indicates a kingdom with a close relationship to eukaryotes. Proc Natl Acad Sci USA 81:3786–3790

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lake JA, Jain R, Rivera MC (1999) Mix and match in the tree of life. Science 283:2027–2028

    Article  CAS  PubMed  Google Scholar 

  • La Scola B, Audic S, Robert C, Jungang L, de Lamballerie X, Drancourt M, Birtles R, Claverie JM, Raoult D (2003) A giant virus in Amoebae. Science 299:2033

    Article  PubMed  Google Scholar 

  • La Scola B, Desnues C, Pagnier I, Robert C, Barrassi L, Fournous G, Merchat M, Suzan-Monti M, Forterre P, Koonin E, Raoult D (2008) The virophage as a unique parasite of the giant Mimivirus. Nature 455:100–104

    Article  PubMed  CAS  Google Scholar 

  • Legendre M, Bartoli J, Shmakova L, Jeudy S, Labadie K, Adrait A, Lescot M, Poirot O, Bertaux L, Bruley C, Coute Y, Rivkina E, Abergel C, Claverie JM (2014) Thirty-year-old distant relative of giant icosahedral DNA viruses with a pandoravirus morphology. Proc Natl Acad Sci USA 111:4274–4279

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Legendre M, Lartigue A, Bertaux L, Jeudy S, Bartoli J, Lescot M, Alempic JM, Ramus C, Bruley C, Labadie K, Shmakova L, Rivkina E, Coute Y, Abergel C, Claverie JM (2015) In-depth study of Mollivirus sibericum, a new 30,000-y-old giant virus infecting Acanthamoeba. Proc Natl Acad Sci USA 112:E5327–E5335

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Margulis L (1993) Symbiosis in cell evolution, 2nd edn. Freeman, New York

    Google Scholar 

  • Margulis L (1996) Archaeal–eubacterial mergers in the origin of eukarya: phylogenetic classification of life. Proc Natl Acad Sci USA 93:1071–1076

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Martin A, Yeats S, Janekovic D, Reiter WD, Aicher W, Zillig W (1984) SAV 1, a temperate uv-inducible DNA virus-like particle from the archaebacterium Sulfolobus acidocaldarius isolate B12. EMBO J 3:2165

    CAS  PubMed  PubMed Central  Google Scholar 

  • Martin W (2005) Archaebacteria (Archaea) and the origin of the eukaryotic nucleus. Curr Opin Microbiol 8:630–637

    Article  CAS  PubMed  Google Scholar 

  • Martin W, Müller M (1998) The hydrogen hypothesis for the first eukaryote. Nature 392:37–41

    Article  CAS  PubMed  Google Scholar 

  • Martin W, Koonin EV (2006) Introns and the origin of nucleus-cytosol compartmentalization. Nature 440:41–45

    Article  CAS  PubMed  Google Scholar 

  • Mochizuki T, Yoshida T, Tanaka R, Forterre P, Sako Y, Prangishvili D (2010) Diversity of viruses of the hyperthermophilic archaeal genus Aeropyrum, and isolation of the Aeropyrum pernix bacilliform virus 1, APBV1, the first representative of the family Clavaviridae. Virol 402:347–354

    Article  CAS  Google Scholar 

  • Mochizuki T, Krupovic M, Pehau-Arnaudet G, Sako Y, Forterre P, Prangishvili D (2012) Archaeal virus with exceptional virion architecture and the largest single-stranded DNA genome. Proc Natl Acad Sci USA 109:13386–13391

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Monier A, Claverie JM, Ogata H (2008) Taxonomic distribution of large DNA viruses in the sea. Genome Biol 9:R106

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Moreira D, López-García P (1998) Symbiosis between methanogenic archaea and delta-proteobacteria as the origin of eukaryotes: the syntrophic hypothesis. J Mol Evol 47:517–530

    Article  CAS  PubMed  Google Scholar 

  • Mutsafi Y, Fridmann-Sirkis Y, Milrot E, Hevroni L, Minsky A (2014) Infection cycles of large DNA viruses: emerging themes and underlying questions. Virol 466–467:3–14

    Article  CAS  Google Scholar 

  • Ngounga T, Pagnier I, Reteno DGI, Raoult D, La Scola B, Colson P (2013) Real-time PCR systems targeting giant viruses of Amoebae and their virophages. Intervirol 56:413–423

    Article  CAS  Google Scholar 

  • Nunoura T, Takaki Y, Kakuta J, Nishi S, Sugahara J, Kazama H, Chee GJ, Hattori M, Kanai A, Atomi H, Takai K, Takami H (2011) Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group. Nucleic Acids Res 39:3204–3223

    Article  CAS  PubMed  Google Scholar 

  • Ohyanagi H, Ikeo K, Gojobori T (2008) The origin of nucleus: rebuild from the prokaryotic ancestors of ribosome export factors. Gene 423:149–152

    Article  CAS  PubMed  Google Scholar 

  • Petitjean C, Deschamps P, Lopez-Garcia P, Moreira D (2015) Rooting the domain Archaea by phylogenomic analysis supports the foundation of the new kingdom proteoarchaeota. Genome Biol Evol 7:191–204

    Article  Google Scholar 

  • Philippe N, Legendre M, Doutre G, Coute Y, Poirot O, Lescot M, Arslan D, Seltzer V, Bertaux L, Bruley C, Garin J, Claverie JM, Abergel C (2013) Pandoraviruses: amoeba viruses with genomes up to 2.5 Mb reaching that of parasitic eukaryotes. Science 341:281–286

    Article  CAS  PubMed  Google Scholar 

  • Pietilä MK, Roine E, Paulin L, Kalkkinen N, Bamford DH (2009) An ssDNA virus infecting archaea: a new lineage of viruses with a membrane envelope. Mol Microb 72:307–319

    Article  CAS  Google Scholar 

  • Pina M, Bize A, Forterre P, Prangishvili D (2011) The archeoviruses. FEMS Microbiol Rev 35:1035–1054

    Article  CAS  PubMed  Google Scholar 

  • Prangishvili D (2013) The wonderful world of archaeal viruses. Ann Rev Microbiol 67:565–585

    Article  CAS  Google Scholar 

  • Prangishvili D, Garrett RA, Koonin EV (2006) Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life. Virus Res 117:52–67

    Article  CAS  PubMed  Google Scholar 

  • Prangishvili D, Basta T, Garrett RA, Krupovic M (2016) Viruses of the Archaea. eLS 1–9

    Google Scholar 

  • Preston CM, Wu KY, Molinski TF, DeLong EF (1996) A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov. Proc Natl Acad Sci USA 93:6241–6246

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Raoult D, Audic S, Robert C, Abergel C, Renesto P, Ogata H, La Scola B, Suzan M, Claverie JM (2004) The 1.2-megabase genome sequence of Mimivirus. Science 306:1344–1350

    Article  CAS  PubMed  Google Scholar 

  • Rensen EI, Mochizuki T, Quemin E, Schouten S, Krupovic M, Prangishvili D (2016) A virus of hyperthermophilic archaea with a unique architecture among DNA viruses. Proc Natl Acad Sci USA 113:2478–2483

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Reteno DG, Benamar S, Khalil JB, Andreani J, Armstrong N, Klose T, Rossmann M, Colson P, Raoult D, La Scola B (2015) Faustovirus, an asfarvirus-related new lineage of giant viruses infecting Amoebae. J Virol 89:6585–6594

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rice G, Stedman K, Snyder J, Wiedenheft B, Willits D, Brumfield S, McDermott T, Young MJ (2001) Viruses from extreme thermal environments. Proc Natl Acad Sci USA 98:13341–13345

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Schramm B, Locker JK (2005) Cytoplasmic organization of POXvirus DNA replication. Traffic 6:839–846

    Article  CAS  PubMed  Google Scholar 

  • Seitz KW, Lazar CS, Hinrichs KU, Teske AP, Baker BJ (2016) Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction. ISME J 10:1696–1705

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Snyder JC, Bolduc B, Young MJ (2015) 40 Years of archaeal virology: expanding viral diversity. Virol 479–480:369–378

    Article  CAS  Google Scholar 

  • Spang A, Saw JH, Jørgensen SL, Zaremba-Niedzwiedzka K, Martijn J, Lind AE, van Eijk R, Schleper C, Guy L, Ettema TJ (2015) Complex archaea that bridge the gap between prokaryotes and eukaryotes. Nature 521:173–179

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Stanier RY (1970) Some aspects of the biology of cells and their possible evolutionary significance. In: Charles HP, Knight BCJG (eds) Organization and control in prokaryotic and eukaryotic cells. Cambridge University Press, Cambridge, pp 1–38

    Google Scholar 

  • Staub E, Fiziev P, Rosenthal A, Hinzmann B (2004) Insights into the evolution of the nucleolus by an analysis of its protein domain repertoire. BioEssays 26:567–581

    Article  CAS  PubMed  Google Scholar 

  • Suzan-Monti M, La Scola B, Barrassi L, Espinosa L, Raoult D (2007) Ultrastructural characterization of the giant volcano-like virus factory of Acanthamoeba polyphaga Mimivirus. PLoS ONE 3:e328

    Article  CAS  Google Scholar 

  • Tahirov TH, Makarova KS, Rogozin IB, Pavlov YI, Koonin EV (2009) Evolution of DNA polymerases: an inactivated polymerase-exonuclease module in Pol ε and a chimeric origin of eukaryotic polymerases from two classes of archaeal ancestors. Biol Direct 4:11

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Takemura M (2001) Poxviruses and the origin of the eukaryotic nucleus. J Mol Evol 52:419–425

    Article  CAS  PubMed  Google Scholar 

  • Takemura M (2011) Function of DNA polymerase α in a replication fork and its putative roles in genomic stability and eukaryotic evolution. In: Kušić-Tišma (ed) Fundamental aspects of DNA replication, InTech-Open Access Publisher, pp 187–204

    Google Scholar 

  • Takemura M, Yokobori S, Ogata H (2015) Evolution of eukaryotic DNA polymerases via interaction between cells and large DNA viruses. J Mol Evol 81:24–33

    Article  CAS  PubMed  Google Scholar 

  • Takemura M (2016a) The draft genome sequence of Tokyovirus, a member of Marseilleviridae isolated from the Arakawa River of Tokyo, Japan. Genome Announc 4:e00429–16

    PubMed  PubMed Central  Google Scholar 

  • Takemura M (2016b) Morphological and taxonomic properties of Tokyovirus, the first Marseilleviridae member isolated from Japan. Microbes Environ 31:442–448

    Article  PubMed  PubMed Central  Google Scholar 

  • Takemura M, Mikami T, Murono S (2016) Nearly complete genome sequences of two Mimivirus strains isolated from Japanese fresh water pond and river mouth. Genome Announc 4:e01378–16

    PubMed  PubMed Central  Google Scholar 

  • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30:2725–2729

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Thomas V, Bertelli C, Collyn F, Casson N, Telenti A, Goesmann A, Croxatto A, Greub G (2011) Lausannevirus, a giant amoebal virus encoding histone doublets. Environ Microbiol 13:1454–1466

    Article  CAS  PubMed  Google Scholar 

  • Tolonen N, Doglio L, Schleich S, Locker JK (2001) Vaccinia virus DNA replication occurs in endoplasmic reticulum-enclosed cytoplasmic mini-nuclei. Mol Biol Cell 12:2031–2046

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wang TSF (1991) Eukaryotic DNA polymerases. Annu Rev Biochem 60:513–552

    Article  CAS  PubMed  Google Scholar 

  • Woese CR, Fox GE (1977) Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci USA 74:5088–5090

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Woese CR, Kandler O, Wheelis ML (1990) Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 87:4576–4579

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wood AG, Whitman WB, Konisky J (1989) Isolation and characterization of an archaebacterial viruslike particle from Methanococcus-voltae A3. J Bacteriol 171:93–98

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Yoosuf N, Yutin N, Colson P, Shabalina SA, Pagnier I, Robert C, Azza S, Klose T, Wong J, Rossmann MG, La Scola B, Raoult D, Koonin EV (2012) Related giant viruses in distant locations and different habitats: Acanthamoeba polyphaga moumouvirus represents a third lineage of the Mimiviridae that is close to the Megavirus lineage. Genome Biol Evol 4:1324–1330

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Zaremba-Niedzwiedzka K, Caceres EF, Saw JH, Bäckström D, Juzokaite L, Vancaester E, Seitz KW, Anantharaman K, Starnawski P, Kjeldsen KU, Stott MB, Nunoura T, Banfield JF, Schramm A, Baker BJ, Spang A, Ettema TJ (2017) Asgard archaea illuminate the origin of eukaryotic cellular complexity. Nature 541:353–358

    Article  CAS  PubMed  Google Scholar 

  • Zillig W, Kletzin A, Schleper C, Holz I, Janekovic D, Hain J, Lanzendörfer M, Kristjansson JK (1993) Screening for Sulfolobales, their plasmids and their viruses in Icelandic solfataras. Syst Appl Microbiol 16:609–628

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

  1. Laboratory of Biology, Department of Liberal Arts, Faculty of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo, 162-8601, Japan

    Masaharu Takemura

  2. Earth-Life Science Institute, Tokyo Institute of Technology, 1-12-20 Ookayama, Meguro-ku, Tokyo, 152-8550, Japan

    Tomohiro Mochizuki

Authors
  1. Masaharu Takemura
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Tomohiro Mochizuki
    View author publications

    You can also search for this author in PubMed Google Scholar

Corresponding authors

Correspondence to Masaharu Takemura or Tomohiro Mochizuki .

Editor information

Editors and Affiliations

  1. Telos-Philosophische Praxis, Bürmoos, Salzburg, Austria

    Guenther Witzany

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer International Publishing AG

About this chapter

Cite this chapter

Takemura, M., Mochizuki, T. (2017). Evolutionary Interaction Between Archaeal-Eukaryal Cell Lineages and Viruses. In: Witzany, G. (eds) Biocommunication of Archaea. Springer, Cham. https://doi.org/10.1007/978-3-319-65536-9_15

Download citation

Publish with us

Policies and ethics

Search

Navigation