Abstract
Pneumocystis jirovecii pneumonia (PcP or pneumocystosis) remains a major cause of respiratory illness among immunocompromised patients, especially those infected with the human immunodeficiency virus (HIV). P. jirovecii infection has also been detected in healthy individuals and people with chronic lung diseases, raising the possibility that the spectrum of illness caused by this pathogenic fungus may extend well beyond the immunocompromised host. In industrialized countries, while the number of acquired immunodeficiency syndrome (AIDS) patients suffering from PcP decreases, there is a rising number of non-HIV immunocompromised patients at risk for life-threatening PcP. In contrast, in developing countries a limited number of epidemiological studies have evaluated PcP prevalence; however, recent reports have described an increased rate of the disease in AIDS patients in Africa, Asia and South America.
After nearly three decades of intensive research, a significant progress has been made in the understanding of PcP; however, this disease continues to be a challenge for clinicians and microbiologists; in particular, the processes of detection and interpretation of the PcP testing, because even the most current diagnostic methods cannot adequately differentiate between colonized (asymptomatic) and symptomatic patients.
This chapter reviews the basic biology of P. jirovecii and the epidemiology of the caused infection, including genetic diversity. It also discusses pathogenesis and host defences against P. jirovecii, and the clinical presentation in HIV-infected and non-HIV-infected immunocompromised patients. Attention will be devoted to classic and modern approaches for diagnosis, as well as to treatment and prophylaxis of PcP. This chapter is designed to present a balanced, comprehensive, and concise examination of the latest advances in the field of P. jirovecii pneumonia, and to contain the most up-to-date references.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Chagas C (1909) Nova tripanosomiae humana. Mem Inst Oswaldo Cruz 1:159–218
Carini A (1910) Formas de eschizogonia do Trypanosoma lewisi. Soc De Med et Chir de São Paulo. Bull Inst Pasteur IX:973–978
Delanoe P, Delanoe M (1912) Sur les rapports des kystes de Carini du poumon des rats avec le Trypanosoma lewisi. C R Hebd Seances Acad Sci 155:658–659
Hughes WT (2005) Historical overview. In: Walzer PD, Cushion MT (eds) Pneumocystis pneumonia, 3rd edn. Marcel Dekker, New York, pp 1–37
Tang X, Bartlett MS, Smith J et al (1998) Determination of copy number of rRNA genes in Pneumocystis carinii f. sp. hominis. J Clin Microbiol 36:2491–2494
Edman JC, Kovacs JA, Masur H et al (1988) Ribosomal RNA sequence shows Pneumocystis carinii to be a member of the fungi. Nature 334:519–522
Stringer SL, Hudson K, Blase MA et al (1989) Sequence from ribosomal RNA of Pneumocystis carinii compared to those of four fungi suggests an ascomycetous affinity. J Protozool 36:14S–16S
Readhead SA, Cushion MT, Frenkel JK et al (2006) Pneumocystis and Trypanossoma cruzi: nomenclature and typifications. J Eukaryot Microbiol 53:2–11
Aliouat-Denis CM, Martinez A, Aliouat EM et al (2009) The pneumocystis life cycle. Mem Inst Oswaldo Cruz 104:419–426
Cushion MT (2010) Are members of the fungal genus pneumocystis (a) commensals; (b) opportunists; (c) pathogens; or (d) all of the above? PLoS Pathog 6:e1001009
Yoshida Y, Matsumoto Y, Yamada M et al (1984) Pneumocystis carinii: electron microscopic investigation on the interaction of trophozoite and alveolar lining cell. Zentralbl Bakteriol Mikrobiol Hyg A 256:390–399
Yoshida Y (1989) Ultrastructural studies of Pneumocystis carinii. J Protozool 36:53–60
Vohra PK, Park JG, Sanyal B et al (2004) Expression analysis of PCSTE3, a putative pheromone receptor from the lung pathogenic fungus Pneumocystis carinii. Biochem Biophys Res Commun 319:193–199
Matos O (1999) Epidemiologia e diagnóstico da pneumonia por Pneumocystis carinii. Contribuição para a avaliação de técnicas de biologia molecular aplicadas ao diagnóstico da pneumocistose. Dissertation, Universidade Nova de Lisboa, p 246
Dei-Cas E, Aliouat EM, Cailliez JC (2005) Pneumocystis cellular structure. In: Walzer PD, Cushion MT (eds) Pneumocystis pneumonia, 3rd edn. Marcel Dekker, New York, pp 61–94
Dei-Cas E, Jackson H, Palluault F et al (1991) Ultrastructural observations on the attachment of Pneumocystis carinii in vitro. J Protozool 38:205S–207S
Raviglione MC (1990) Extrapulmonary pneumocystosis: the first 50 cases. Rev Infect Dis 12:1127–1138
Medrano FJ, Montes-Cano M, Conde M et al (2005) Pneumocystis jirovecii in general population. Emerg Infect Dis 11:245–250
Morris A, Lundgren JD, Masur H et al (2004) Current epidemiology of Pneumocystis pneumonia. Emerg Infect Dis 10:1713–1720
Huang L, Cattamanchi A, Davis JL et al (2011) International HIV-associated Opportunistic Pneumonias (IHOP) Study; Lung HIV Study. HIV-associated Pneumocystis pneumonia. Proc Am Thorac Soc 8:294–300
Miller RF, Huang L, Walzer PD (2013) Pneumocystis pneumonia associated with human immunodeficiency virus. Clin Chest Med 34:229–241
Phair J, Muñoz A, Detels R et al (1990) The risk of Pneumocystis carinii pneumonia among men infected with human immunodeficiency virus type 1. Multicenter AIDS Cohort Study Group. N Engl J Med 322:161–165
Panel on Opportunistic Infections in HIV-Infected Adults and Adolescents. Guidelines for the prevention and treatment of opportunistic infections in HIV-infected adults and adolescents: recommendations from the Centers for Disease Control and Prevention, the National Institutes of Health, and the HIV Medicine Association of the Infectious Diseases Society of America. http://aidsinfo.nih.gov/contentfiles/lvguidelines/adult_oi.pdf. Accessed 9 Jan 2017
Kaplan JE, Hanson DL, Navin TR et al (1998) Risk factors for primary Pneumocystis carinii pneumonia in human immunodeficiency virus-infected adolescents and adults in the United States: reassessment of indications for chemoprophylaxis. J Infect Dis 178:1126–1132
Miguez-Burbano MJ, Ashkin D, Rodriguez A et al (2005) Increased risk of Pneumocystis carinii and community-acquired pneumonia with tobacco use in HIV disease. Int J Infect Dis 9:208–217
Maertens J, Cesaro S, Maschmeyer G et al (2016) ECIL guidelines for preventing Pneumocystis jirovecii pneumonia in patients with haematological malignancies and stem cell transplant recipientes. J Antimicrob Chemother 71:2397–2404
Roblot F, Imbert S, Godet C et al (2004) Risk factors analysis for Pneumocystis jirovecii pneumonia (PCP) in patients with haematological malignancies and pneumonia. Scand J Infect Dis 36:848–854
Overgaard UM, Helweg-Larsen J (2007) Pneumocystis jiroveci pneumonia (PCP) in HIV-1-negative patients: a retrospective study 2002-2004. Scand J Infect Dis 39:589–595
Cheson BD (1995) Infectious and immunosuppressive complications of purine analog therapy. J Clin Oncol 13:2431–2448
Venhuizen AC, Hustinx WN, van Houte AJ et al (2008) Three cases of Pneumocystis jirovecii pneumonia (PCP) during first-line treatment with rituximab in combination with CHOP-14 for aggressive B-cell non-Hodgkin’s lymphoma. Eur J Haematol 80:275–276
Martin SI, Marty FM, Fiumara K et al (2006) Infectious complications associated with alemtuzumab use for lymphoproliferative disorders. Clin Infect Dis 43:16–24
Mansharamani NG, Balachandran D, Vernovsky I et al (2000) Peripheral blood CD4+ T-lymphocyte counts during Pneumocystis carinii pneumonia in immunocompromised patients without HIV infection. Chest 118:712–720
Martin SI, Fishman JA, AST Infectious Diseases Community of Practice (2013) Pneumocystis pneumonia in solid organ transplantation. Am J Transplant 13:272–279
Hardy AM, Wajszczuk CP, Suffredini AF et al (1984) Pneumocystis carinii pneumonia in renal-transplant recipients treated with cyclosporine and steroids. J Infect Dis 149:143–147
Lufft V, Kliem V, Behrend M et al (1996) Incidence of Pneumocystis carinii pneumonia after renal transplantation. Impact of immunosuppression. Transplantation 62:421–423
Arend SM, Westendorp RG, Kroon FP et al (1996) Rejection treatment and cytomegalovirus infection as risk factors for Pneumocystis carinii pneumonia in renal transplant recipients. Clin Infect Dis 22:920–925
Pliquett RU, Asbe-Vollkopf A, Hauser PM et al (2012) A Pneumocystis jirovecii pneumonia outbreak in a single kidney-transplant center: role of cytomegalovirus co-infection. Eur J Clin Microbiol Infect Dis 31:2429–2437
Radisic M, Lattes R, Chapman JF et al (2003) Risk factors for Pneumocystis carinii pneumonia in kidney transplant recipients: a case–control study. Transpl Infect Dis 5:84–93
de Boer MG, Bruijnesteijn van Coppenraet LE, Gaasbeek A et al (2007) An outbreak of Pneumocystis jiroveci pneumonia with 1 predominant genotype among renal transplant recipients: interhuman transmission or a common environmental source? Clin Infect Dis 44:1143–1149
Henson JW, Jalaj JK, Walker RW et al (1991) Pneumocystis carinii pneumonia in patients with primary brain tumors. Arch Neurol 48:406–409
Varthalitis I, Meunier F (1993) Pneumocystis carinii pneumonia in cancer patients. Cancer Treat Rev 19:387–413
Kulke MH, Vance EA (1997) Pneumocystis carinii pneumonia in patients receiving chemotherapy for breast cancer. Clin Infect Dis 25:215–218
Barbounis V, Aperis G, Gambletsas E et al (2005) Pneumocystis carinii pneumonia in patients with solid tumors and lymphomas: predisposing factors and outcome. Anticancer Res 25:651–655
Godeau B, Coutant-Perronne V, Le Thi HD et al (1994) Pneumocystis carinii pneumonia in the course of connective tissue disease: report of 34 cases. J Rheumatol 21:246–251
Kaur N, Mahl TC (2007) Pneumocystis jiroveci (carinii) pneumonia after infliximab therapy: a review of 84 cases. Dig Dis Sci 52:1481–1484
Komano Y, Harigai M, Koike R et al (2009) Pneumocystis jiroveci pneumonia in patients with rheumatoid arthritis treated with infliximab: a retrospective review and case-control study of 21 patients. Arthritis Rheum 61:305–312
Buchacz K, Baker RK, Palella FJ Jr et al (2010) AIDS-defining opportunistic illnesses in US patients, 1994-2007: a cohort study. AIDS 24:1549–1559
Lundberg BE, Davidson AJ, Burman WJ (2000) Epidemiology of Pneumocystis carinii pneumonia in an era of effective prophylaxis: the relative contribution of non-adherence and drug failure. AIDS 14:2559–2566
Wolff AJ, O'Donnell AE (2001) Pulmonary manifestations of HIV infection in the era of highly active antiretroviral therapy. Chest 120:1888–1893
Kaplan JE, Benson C, Holmes KH et al (2009) Guidelines for prevention and treatment of opportunistic infections in HIV-infected adults and adolescents: recommendations from CDC, the National Institutes of Health, and the HIV Medicine Association of the Infectious Diseases Society of America. MMWR Recomm Rep 58:1–207
European Centre for Disease Prevention and Control (ECDC), World Health Organization (WHO) (2015) HIV/AIDS surveillance in Europe 2015. In: Surveillance Report. http://www.euro.who.int/__data/assets/pdf_file/0019/324370/HIV-AIDS-surveillance-Europe-2015.pdf?ua=1. Accessed 15 Feb 2017
Nuesch R, Bellini C, Zimmerli W (1999) Pneumocystis carinii pneumonia in human immunodeficiency virus (HIV)-positive and HIV-negative immunocompromised patients. Clin Infect Dis 29:1519–1523
Roblot F, Godet C, Le Moal G et al (2002) Analysis of underlying diseases and prognosis factors associated with Pneumocystis carinii pneumonia in immunocompromised HIV-negative patients. Eur J Clin Microbiol Infect Dis 21:523–531
Morris A, Sciurba FC, Norris KA (2008) Pneumocystis: a novel pathogen in chronic obstructive pulmonary disease? COPD 5:43–51
Mori S, Sugimoto S (2012) Pneumocystis jirovecii infection: an emerging threat to patients with rheumatoid arthritis. Rheumatology 51:2120–2130
Maini R, Henderson KL, Sheridan EA et al (2013) Increasing Pneumocystis pneumonia, England, UK, 2000-2010. Emerg Infect Dis 19:386–392
Atwal SS, Puranik S, Mehra S et al (2014) Pneumocystis pneumonia – a novel complication in a non-HIV dengue patient. J Clin Diagn Res 8(9):RL01–RL02
Avino LJ, Naylor SM, Roecker AM (2016) Pneumocystis jirovecii pneumonia in the non-HIV-infected population. Ann Pharmacother 50:673–679
French N, Kaleebu P, Pisani E et al (2006) Human immunodeficiency virus (HIV) in developing countries. Ann Trop Med Parasitol 100:433–454
Matos O, Esteves F (2010) Epidemiology and clinical relevance of Pneumocystis jirovecii Frenkel, 1976 dihydropteroate synthase gene mutations. Parasite 17:219–232
de Armas RY, Wissmann G, Müller AL et al (2011) Pneumocystis jirovecii pneumonia in developing countries. Parasite 18:219–228
Matos O (2012) Pneumocystis jirovecii pneumonia in Africa: impact and implications of highly sensitive diagnostic technologies. N Am J Med Sci 4:486–487
Pifer LL, Hughes WT, Stagno S et al (1978) Pneumocystis carinii infection: evidence for high prevalence in normal and immunosuppressed children. Pediatrics 61:35–41
Lundgren B, Lebech M, Lind K et al (1993) Antibody response to a major human Pneumocystis carinii surface antigen in patients without evidence of immunosuppression and in patients with suspected atypical pneumonia. Eur J Clin Microbiol Infect Dis 12:105–109
Martinez A, Halliez MCM, Moukhtar Aliouat E et al (2013) Growth and airborne transmission of cell-sorted life cycle stages of Pneumocystis carinii. PLoS One 8:e79958
Olsson M, Sukura A, Lindberg LA et al (1996) Detection of Pneumocytis carinii DNA by filtration of air. Scand J Infect Dis 28:279–282
Wakefield AE (1996) DNA sequences identical to Pneumocystis carinii f. sp. carinii and Pneumocystis carinii f. sp. hominis in samples of air spora. J Clin Microbiol 34:1754–1759
Helweg-Larsen J, Tsolaki AG, Miller RF et al (1998) Clusters of Pneumocystis carinii pneumonia: analysis of person-to-person transmission by genotyping. QJM 91:813–820
de Boer MG, Kroon FP, le Cessie S et al (2011) Risk factors for Pneumocystis jirovecii pneumonia in kidney transplant recipients and appraisal of strategies for selective use of chemoprophylaxis. Transpl Infect Dis 13:559–569
Mortier E, Pouchot J, Bossi P et al (1995) Maternal-fetal transmission of Pneumocystis carinii in human immunodeficiency virus infection. N Engl J Med 332:825
Miller RF, Ambrose HE, Novelli V et al (2002) Probable mother-to-infant transmission of Pneumocystis carinii f. sp. hominis Infection. J Clin Microbiol 40:1555–1557
Rivero L, de la Horra C, Montes-Cano MA et al (2008) Pneumocystis jirovecii transmission from imunocompetente carriers to infant. Emerg Infect Dis 14:1116–1118
Montes-Cano MA, Chabe M, Fontillon-Alberdi M et al (2009) Vertical transmission of Pneumocystis jirovecii in humans. Emerg Infect Dis 15:125–127
Dei-Cas E (2000) Pneumocystis infections: the iceberg? Med Mycol 1:23–32
Keely SP, Stringer JR, Baughman RP et al (1995) Genetic variation among Pneumocystis carinii hominis isolates in recurrent pneumocystosis. J Infect Dis 172:595–598
Stringer JR, Walzer PD (1996) Molecular biology and epidemiology of Pneumocystis carinii infection in AIDS. AIDS 10:561–571
Sing A, Roggenkamp A, Autenrieth IB et al (1999) Pneumocystis carinii carriage in immunocompetent patients with primary pulmonary disorders as detected by single or nested PCR. J Clin Microbiol 37:3409–3410
Chabé M, Dei-cas E, Creusy C et al (2004) Immunocompetent hosts as a reservoir of Pneumocystis organisms: histological and rt-PCR data demonstrate active replication. Eur J Clin Microbiol Infect Dis 23:89–97
Wakefield AE, Lindley AR, Ambrose HE et al (2003) Limited asymptomatic carriage of Pneumocystis jiroveci in human immunodeficiency virus–infected patients. J Infect Dis 187:901–908
Beard CB, Carter JL, Keely SP et al (2000) Genetic variation in Pneumocystis carinii isolates from different geographic regions: implications for transmission. Emerg Infect Dis 6:265–272
Rabodonirina L, Vanhems P, Couray-Targe S et al (2004) Molecular evidence of interhuman transmission of Pneumocystis pneumonia among renal transplant reciepients hospitalized with HIV-positive patients. Emerg Infect Dis 10:1766–1773
Gianella S, Haeberli L, Joos B et al (2010) Molecular evidence of interhuman transmission in an outbreak of Pneumocystis jirovecii pneumonia among renal transplant recipients. Transpl Infect Dis 12:1–10
Matos O, Costa MC, Lundgren B et al (2001) Effect of oral washes on the diagnosis of Pneumocystis carinii pneumonia with a low parasite burden and on detection of organisms in subclinical infections. Eur J Clin Microbiol Infect Dis 20:573–575
Morris A, Norris KA (2012) Colonization by Pneumocystis jirovecii and its role in disease. Clin Microbiol Rev 25:297–317
Latouche S, Ortona E, Mazars E et al (1997) Biodiversity of Pneumocystis carinii hominis: typing with different DNA regions. J Clin Microbiol 35:383–387
Kazanjian P, Locke AB, Hossler PA et al (1998) Pneumocystis carinii mutations associated with sulfa and sulfone prophylaxis failures in AIDS patients. AIDS 12:873–878
Miller RF, Wakefield AE (1999) Pneumocystis carinii genotypes and severity of pneumonia. Lancet 353:2039–2040
Matos O, Esteves F (2010) Pneumocystis jirovecii multilocus gene sequencing: findings and implications. Future Microbiol 5:1257–1267
Esteves F, Gaspar J, Marques T et al (2010) Identification of relevant single-nucleotide polymorphisms in Pneumocystis jirovecii: relationship with clinical data. Clin Microbiol Infect 16:878–884
Hauser PM, Blanc DS, Bille J et al (1996) Development of a molecular typing method for Pneumocystis carinii sp.f. hominis. J Euk Microbiol 43:34S
Hauser PM, Francioli P, Bille J et al (1997) Typing of Pneumocystis carinii f. sp. hominis by single-strand conformation polymorphism of four genomic regions. J Clin Microbiol 35:3086–3091
Hauser PM, Blanc DS, Sudre P et al (2001) Genetic diversity of Pneumocystis carinii in HIV-positive and -negative patients as revealed by PCR-SSCP typing. AIDS 15:461–466
Ripamonti C, Orenstein A, Kutty G et al (2009) Restriction fragment length polymorphism typing demonstrates substantial diversity among Pneumocystis jirovecii isolates. J Infect Dis 200:1616–1622
Lu JJ, Bartlett MS, Smith JW et al (1995) Typing of Pneumocystis carinii f. sp. hominis strains with type-specific oligonucleotide probes derived from nucleotide sequences of internal transcribed spacers of rRNA genes. J Clin Microbial 33:2973–2977
Hauser PM (2004) The development of a typing method for an uncultivable microorganism: the example of Pneumocystis jirovecii. Infect Genet Evol 4:199–203
Esteves F, Gaspar J, De Sousa B et al (2011) Clinical relevance of multiple single-nucleotide polymorphisms in Pneumocystis jirovecii Pneumonia: development of a multiplex PCR-single-base-extension methodology. J Clin Microbiol 49:1810–1815
Esteves F, Gaspar J, de Sousa B et al (2012) Pneumocystis jirovecii multilocus genotyping in pooled DNA samples: a new approach for clinical and epidemiological studies. Clin Microbiol Infect 18:E177–E184
Parobek CM, Jiang LY, Patel JC et al (2014) Multilocus microsatellite genotyping array for investigation of genetic epidemiology of Pneumocystis jirovecii. J Clin Microbiol 52:1391–1392
Gits-Muselli M, Peraldi MN, de Castro N et al (2015) New short tandem repeat-based molecular typing method for Pneumocystis jirovecii reveals intrahospital transmission between patients from different wards. PLoS One 10:e0125763
Wakefield AE, Pixley FJ, Banerji S et al (1990) Amplification of mitochondrial ribosomal RNA sequences from Pneumocystis carinii DNA of rat and human origin. Mol Biochem Parasitol 43:69–76
Lee CH, Helweg-Larsen J, Tang X et al (1998) Update on Pneumocystis carinii f. sp. hominis typing based on nucleotide sequence variations in internal transcribed spacer regions of rRNA genes. J Clin Microbiol 36:734–741
Mei Q, Gurunathan S, Masur H et al (1998) Failure of co-trimoxazole in Pneumocystis carinii infection and mutations in dihydropteroate synthase gene. Lancet 351:1631–1632
Walker DJ, Wakefield AE, Dohn MN et al (1998) Sequence polymorphisms in the Pneumocystis carinii cytochrome b gene and their association with atovaquone prophylaxis failure. J Infect Dis 178:1767–1775
Helweg-Larsen J, Benfield TL, Eugen-Olsen J et al (1999) Effects of mutations in Pneumocystis carinii dihydropteroate synthase gene on outcome of AIDS-associated P. carinii pneumonia. Lancet 354:1347–1351
Ma L, Borio L, Masur H et al (1999) Pneumocystis carinii dihydropteroate synthase but not dihydrofolate reductase gene mutations correlate with prior trimethoprim-sulfamethoxazole or dapsone use. J Infect Dis 180:1969–1978
Armstrong W, Meshnick S, Kanzanjian P (2000) Pneumocystis carinii mutations associated with sulfa and sulfone prophylaxis failures in immunocompromised patients. Microbes Infect 2:61–67
Huang L, Beard CB, Creasman J et al (2000) Sulfa or sulfone prophylaxis and geographic region predict mutations in the Pneumocystis carinii dihydropteroate synthase gene. J Infect Dis 182:1192–1198
Kazanjian P, Armstrong W, Hossler PA et al (2001) Pneumocystis carinii cytochrome b mutations are associated with atovaquone exposure in patients with AIDS. J Infect Dis 183:819–822
Costa MC, Gaspar J, Mansinho K et al (2005) Detection of Pneumocystis jirovecii dihydropteroate synthase polymorphisms in patients with Pneumocystis pneumonia. Scand J Infect Dis 37:766–771
Matos O, Lee CH, Jin S et al (2003) Pneumocystis jiroveci in Portuguese immunocompromised patients: association of specific ITS genotypes with treatment failure, bad clinical outcome and childhood. Infect Genet Evol 3:281–285
Crothers K, Beard CB, Turner J et al (2005) Severity and outcome of HIV-associated Pneumocystis pneumonia containing Pneumocystis jirovecii dihydropteroate synthase gene mutations. AIDS 19:801–805
Kazanjian P, Armstrong W, Hossler PA et al (2000) Pneumocystis carinii mutations are associated with duration of sulfa or sulfone prophylaxis exposure in AIDS patients. J Infect Dis 182:551–557
Costa MC, Esteves F, Antunes F et al (2006) Genetic characterization of the dihydrofolate reductase gene of Pneumocystis jirovecii isolates from Portugal. J Antimicrob Chemother 58:1246–1249
Miller RF, Lindley AR, Ambrose HE et al (2003) Genotypes of Pneumocystis jiroveci isolates obtained in Harare, Zimbabwe, and London, United Kingdom. Antimicrob Agents Chemother 47:3979–3981
Costa MC, Esteves F, Antunes F et al (2006) Multilocus genotyping of Pneumocystis jirovecii in immunocompromised patients: preliminary results. J Eukaryot Microbiol 53:S104–S105
Esteves F, Gaspar J, Tavares A et al (2010) Population structure of Pneumocystis jirovecii isolated from immunodeficiency virus-positive patients. Infect Genet Evol 10:192–199
Esteves F, Montes-Cano MA, de la Horra C et al (2008) Pneumocystis jirovecii multilocus genotyping profiles in patients from Portugal and Spain. Clin Microbiol Infect 14:356–362
Alanio A, Gits-Muselli M, Calderon E et al (2016) European study on Pneumocystis jirovecii short tandem repeats genotyping reveals wide population diversity with geographic specificities. J Med Mycol 26:e5–e6
Esteves F, de Sousa B, Calderon EJ et al (2016) Multicentre study highlighting clinical relevance of new high-throughput methodologies in molecular epidemiology of Pneumocystis jirovecii pneumonia. Clin Microbiol Infect 22:566.e9–566.e19
Olsson M, Lidman C, Latouche S et al (1998) Identification of Pneumocystis carinii f. sp. hominis gene sequences in filtered air in hospital environments. J Clin Microbiol 36:1737–1740
Walzer PD (1994) Pathogenic mechanisms. In: Walzer PD (ed) Pneumocystis carinii Pneumonia, 2nd edn. Marcel Dekker, New York, pp 251–265
Thomas CF Jr, Limper AH (2007) Current insights into the biology and pathogenesis of Pneumocystis pneumonia. Nat Rev Microbiol 5:298–308
Gigliotti F, Wright TW (2005) Immunopathogenesis of Pneumocystis carinii pneumonia. Expert Rev Mol Med 7:1–16
Walzer PD (1986) Attachment of microbes to host cells: relevance of Pneumocystis carinii. Lab Investig 54:589–592
Skalski JH, Kottom TJ, Limper AH (2015) Pathology of Pneumocystis pneumonia: life cycle, cell wall and cell signal transduction. FEMS Yeast Res 15:fov046
Pottratz ST, Martin WJ (1990) Role of fibronectin in Pneumocystis carinii attachment to cultured lung cells. J Clin Invest 85:351–356
Pottratz ST, Paulsrud J, Smith JS et al (1991) Pneumocystis carinii attachment to cultured lung cells by pneumocystis gp 120, a fibronectin binding protein. J Clin Invest 88:403–407
Limper AH, Standing JE, Hoffman OA et al (1993) Vitronectin binds to Pneumocystis carinii and mediates organism attachment to cultured lung epithelial cells. Infect Immun 61:4302–4309
Pottratz ST, Weir AL, Wisniowski PE (1994) Pneumocystis carinii attachment increases expression of fibronectin-binding integrins on cultured lung cells. Infect Immun 62:5464–5469
Limper AH, Martin WJ 2nd (1990) Pneumocystis carinii: inhibition of lung cell growth mediated by parasite attachment. J Clin Invest 85:391–396
Wright TW, Gigliotti F (2005) Mechanisms of lung injury during Pneumocystis pneumonia. In: Walzer PD, Cushion MT (eds) Pneumocystis pneumonia, 3rd edn. Marcel Dekker, New York, pp 327–348
Hayes DJ, Stubberfield CR, McBride JD et al (1991) Alterations in cysteine proteinase content of rat lung associated with development of Pneumocystis carinii infection. Infect Immun 59:3581–3588
Breite M, Bailey AM, Martin WJ (1993) Pneumocystis carinii chymase is capable of altering epithelial cell permeability. Am Rev Respir Dis 147:A33
Sukura A, Konttinen YT, Sepper R et al (1995) Collagenases and the serine proteinases elastase and cathepsin G in steroid-induced Pneumocystis carinii pneumonia. J Clin Microbiol 33:829–834
Fox D, Smulian AG (2001) Plasminogen-binding activity of enolase in the opportunistic pathogen Pneumocystis carinii. Med Mycol 39:495–507
Kutty G, Kovacs JA (2003) A single-copy gene encodes Kex1, a serine endoprotease of Pneumocystis jiroveci. Infect Immun 71:571–574
Stringer JR (2007) Antigenic variation in Pneumocystis. J Eukaryot Microbiol 54:8–13
Keely SP, Stringer JR (2009) Complexity of the MSG gene family of Pneumocystis carinii. BMC Genomics 10:367
Limper AH, Offord KP, Smith TF et al (1989) Pneumocystis carinii pneumonia. Differences in lung parasite number and inflammation in patients with and without AIDS. Am Rev Respir Dis 140:1204–1209
Gigliotti F, Limper AH, Wright T (2014) Pneumocystis. Cold Spring Hard Perspect Med 4:a019828
Fleury J, Escudier E, Pocholle MJ et al (1985) Cell population obtained by bronchoalveolar lavage in Pneumocystis carinii pneumonitis. Acta Cytol 29:721–726
Young JA, Stone JW, Mcgonigle RJ et al (1986) Diagnosing Pneumocystis carinii pneumonia by cytological examination of bronchoalveolar lavage fluid: report of 15 cases. J Clin Pathol 39:945–949
Limper AH, Hoyte JS, Standing JE (1997) The role of alveolar macrophages in Pneumocystis carinii degradation and clearance from the lung. J Clin Invest 99:2110–2117
Ezekowitz RA, Williams DJ, Koziel H et al (1991) Uptake of Pneumocystis carinii mediated by the macrophage mannose receptor. Nature 351:155–158
Steele C, Marrero L, Swain S et al (2003) Alveolar macrophage-mediated killing of Pneumocystis carinii f. sp. muris involves molecular recognition by the Dectin-1 β-glucan receptor. J Exp Med 198:1677–1688
Brown GD, Gordon S (2005) Immune recognition of fungal beta-glucans. Cell Microbiol 7:471–479
Kelly MN, Shellito JE (2010) Current understanding of Pneumocystis immunology. Future Microbiol 5:43–65
Laursen AL, Moller B, Rungby J et al (1994) Pneumocystis carinii – induced activation of the respiratory burst in human monocytes and macrophages. Clin Exp Immunol 98:196–202
Zheng M, Shellito JE, Marrero L et al (2001) CD4+ T-cell independent vaccination against Pneumocystis carinii in mice. J Clin Invest 108:1469–1474
Monnet X, Vidal-Petiot E, Osman D et al (2008) Critical care management and outcome of severe Pneumocystis pneumonia in patients with and without HIV infection. Crit Care 12:R28
Jensen BN, Lisse IM, Gerstoft J et al (1991) Cellular profiles in bronchoalveolar lavage fluid of HIV-infected patients with pulmonary symptoms: relation to diagnosis and prognosis. AIDS 5:527–533
Sadaghdar H, Huang ZB, Eden E (1992) Correlation of bronchoalveolar lavage findings to severity of Pneumocystis carinii pneumonia in AIDS. Evidence for the development of high-permeability pulmonary edema. Chest 102:63–69
Roths JB, Marshall JD, Allen RD et al (1990) Spontaneous Pneumocystis carinii pneumonia in immunodeficient mutant SCID mice. Natural history and pathobiology. Am J Pathol 136:1173–1186
Wright TW, Gigliotti F, Finkelstein JN et al (1999) Immune-mediated inflammation directly impairs pulmonary function, contributing to the pathogenesis of Pneumocystis carinii pneumonia. J Clin Invest 104:1307–1317
Harmsen AG, Stankiewicz M (1990) Requirement for CD4+ cells in resistance to Pneumocystis carinii pneumonia in mice. J Exp Med 172:937–945
Beck JM, Harmsen AG (1998) Lymphocytes in host defense against Pneumocystis carinii. Semin Respir Infect 13:330–338
Shellito JE, Tate C, Ruan S et al (2000) Murine CD4 T lymphocyte subsets and host defense against Pneumocystis carinii. J Infect Dis 181:2011–2017
Shipley TW, Kling HM, Morris A et al (2010) Persistent Pneumocystis colonization leads to the development of chronic obstructive pulmonary disease in a nonhuman primate model of AIDS. J Infect Dis 202:302–312
Beck JM, Warnock ML, Curtis JL et al (1991) Inflammatory responses to Pneumocystis carinii in mice selectively depleted of helper T lymphocytes. Am J Respir Cell Mol Biol 5:186–197
Beck JM, Newbury RL, Palmer BE et al (1996) Role of CD8 lymphocytes in host defense against Pneumocystis carinii in mice. J Lab Clin Med 128:477–487
Steele C, Zheng M, Young E et al (2002) Increased host resistance against Pneumocystis carinii pneumonia in gamma-delta T-cell-deficient mice: protective role of gamma interferon and CD8 T cells. Infect Immun 70:5208–5215
Marcotte H, Levesque D, Delanay K et al (1996) Pneumocystis carinii infection in transgenic B cell-deficient mice. J Infect Dis 173:1034–1037
Lund FE, Schuer K, Hollifield M et al (2003) Clearance of Pneumocystis carinii in mice is dependent on B cells but not on P. carinii-specific antibody. J Immunol 171:1423–1430
Lund FE, Hollifield M, Schuer K et al (2006) B cells are required for generation of protective effector and memory CD4 cells in response to Pneumocystis lung infection. J Immunol 176:6147–6154
Hugle B, Solomon M, Harvey E et al (2010) Pneumocystis jiroveci pneumonia following rituximab treatment in Wegener’s granulomatosis. Arthritis Care Res 62:1661–1664
Kurokawa T, Kaya H, Yoshida T (2010) Two cases of Pneumocystis jiroveci pneumonia with non-Hodgkin’s lymphoma after CHOP-based chemotherapy containing rituximab. J Clin Exp Hematop 50:159–162
Milledge J, Kakakios A, Gillis J et al (2003) Pneumocystis carinii pneumonia as a presenting feature of X-linked hyper-IgM syndrome. J Paediatr Child Health 39:704–706
Steele C, Shellito JE, Kolls JK (2005) Immunity against the opportunistic fungal pathogen Pneumocystis. Med Mycol 43:1–19
Hoffman OA, Standing JE, Limper AH (1993) Pneumocystis carinii stimulates tumor necrosis factor-alpha release from alveolar macrophages through a beta-glucan-mediated mechanism. J Immunol 150:3932–3940
Wright TW, Pryhuber GS, Chess PR et al (2004) TNF receptor signalling contributes to chemokine secretion, inflammation, and respiratory deficits during Pneumocystis pneumonia. J Immunol 172:2511–2521
Chen W, Havell EA, Moldawer LL et al (1992) Interleukin 1: an important mediator of host resistance against Pneumocystis carinii. J Exp Med 176:713–718
Chen W, Havell EA, Gigliotti F et al (1993) Interleukin-6 production in a murine model of Pneumocystis carinii pneumonia: relation to resistance and inflammatory response. Infect Immun 61:97–102
Paine R 3rd, Preston AM, Wilcoxen S et al (2000) Granulocyte-macrophage colony-stimulating factor in the innate immune response to Pneumocystis carinii pneumonia in mice. J Immunol 164:2602–2609
Qureshi MH, Harmsen AG, Garvy BA (2003) IL-10 modulates host responses and lung damage induced by Pneumocystis carinii infection. J Immunol 170:1002–1009
Ruan S, Mckinley L, Zheng M et al (2008) Interleukin-12 and host defense against murine Pneumocystis pneumonia. Infect Immun 76:2130–2137
Rudner XL, Happel KI, Young EA et al (2007) Interleukin-23 (IL-23)–IL-17 cytokine axis in murine Pneumocystis carinii infection. Infect Immun 75:3055–3061
Wright TW, Johnston CJ, Harmsen AG et al (1999) Chemokine gene expression during Pneumocystis carinii-driven pulmonary inflammation. Infect Immun 67:3452–3460
Ishimine T, Kawakami K, Nakamoto A et al (1995) Analysis of cellular response and gamma interferon synthesis in bronchoalveolar lavage fluid and lung homogenate of mice infected with Pneumocystis carinii. Microbiol Immunol 39:49–58
Levy DE, Marie I, Prakash A (2003) Ringing the interferon alarm: differential regulation of gene expression at the interface between innate and adaptive immunity. Curr Opin Immunol 15:52–58
Hof H (2012) Pneumocystis jirovecii: a peculiar fungus posing particular problems for therapy and prophylaxis. Mycosis 55:1–7
Mofenson LM, Brady MT, Danner SP et al (2009) Guidelines for the Prevention and Treatment of Opportunistic Infections among HIV-exposed and HIV-infected children: recommendations from CDC, the National Institutes of Health, the HIV Medicine Association of the Infectious Diseases Society of America, the Pediatric Infectious Diseases Society, and the American Academy of Pediatrics. MMWR Recomm Rep 58(RR-11):1–166
Ng VL, Yajko DM, Hadley WK (1997) Extrapulmonary pneumocystosis. Clin Microbiol Rev 10:401–418
Fillatre P, Decaux O, Jouneau S et al (2014) Incidence of Pneumocystis jiroveci pneumonia among groups at risk in HIV-negative patients. Am J Med 127:1242.e11–1242.e17
Burke BA, Good RA (1973) Pneumocystis carinii infection. Medicine 52:23–51
Kovacs JA, Hiemenz JW, Macher AM et al (1984) Pneumocystis carinii pneumonia: a comparison between patients with the acquired immunodeficiency syndrome and patients with other immunodeficiencies. Ann Intern Med 100:663–671
Baughman RP (1994) Current methods of diagnosis. In: Walzer PD (ed) Pneumocystis carinii Pneumonia, 2nd edn. Marcel Dekker, New York, pp 381–401
Curtis JR, Yarnold PR, Schwartz DN et al (2000) Improvements in outcomes of acute respiratory failure for patients with human immunodeficiency virus-related Pneumocystis carinii pneumonia. Am J Respir Crit Care Med 162:393–398
Pareja JG, Garland R, Koziel H (1998) Use of adjunctive corticosteroids in severe adult non-HIV Pneumocystis carinii pneumonia. Chest 113:1215–1224
Smith DE, McLuckie A, Wyatt J et al (1988) Severe exercise hypoxaemia with normal or near normal X-rays: a feature of Pneumocystis carinii infection. Lancet 2:1049–1051
Zaman MK, Wooten OJ, Suprahmanya B et al (1988) Rapid noninvasive diagnosis of Pneumocystis carinii from induced liquefied sputum. Ann Intern Med 109:7–10
Selwyn PA, Pumerantz AS, Durante A et al (1998) Clinical predictors of Pneumocystis carinii pneumonia, bacterial pneumonia and tuberculosis in HIV-infected patients. AIDS 12:885–893
Opravil M, Marincek B, Fuchs WA et al (1994) Shortcomings of chest radiography in detecting Pneumocystis carinii pneumonia. J Acquir Immune Defic Syndr 7:39–45
Metersky ML, Colt HG, Olson LK et al (1995) Aids-related spontaneous pneumothorax: risk factors and treatment. Chest 108:946–951
Baughman RP, Dohn MN, Frame PT (1994) The continuing utility of bronchoalveolar lavage to diagnose opportunistic infection in AIDS patients. Am J Med 97:515–522
Stover DE, Zaman MB, Hajdu SI et al (1984) Bronchoalveolar lavage in the diagnosis of diffuse pulmonary infiltrates in the immunosuppressed host. Ann Intern Med 101:1–7
Gruden JF, Huang L, Turner J et al (1997) High-resolution CT in the evaluation of clinically suspected Pneumocystis carinii pneumonia in AIDS patients with normal, equivocal, or nonspecific radiographic findings. AJR Am J Roentgenol 169:967–975
Hidalgo A, Falcó V, Mauleón S et al (2003) Accuracy of high-resolution CT in distinguishing between Pneumocystis carinii pneumonia and non- Pneumocystis carinii pneumonia in AIDS patients. Eur Radiol 13:1179–1184
Collazos J, Beneitez C, Perez-Barba C et al (1985) Pneumocystis carinii Pneumonia. Ann Intern Med 102:137–138
Barry SM, Johnson MA (2001) Pneumocystis carinii pneumonia: a review of current issues in diagnosis and management. HIV Med 2:123–132
Huang L (2005) Clinical presentation and diagnosis of pneumocystis pneumonia in HIV-infected patients. In: Walzer PD, Cushion MT (eds) Pneumocystis pneumonia, 3rd edn. Marcel Dekker, New York, pp 349–406
Schildgen V, Mai S, Khalfaoui S et al (2014) Pneumocystis jirovecii can be productively cultured in differentiated CuFi-8 airway cells. MBio 5:e01186–e01114
Rossiter SJ, Miller DC, Churg AM et al (1979) Open lung biopsy in the immunosuppressed patient. Is it really beneficial? J Thorac Cardiovasc Surg 77:338–345
Fishman JA (2002) Pneumocystis carinii and parasitic infection in the immunocompromised host. In: Rubin RH, Lowell SY (eds) Clinical approach to infection in the compromised host. Kluwer Academic/Plenum, New York, pp 265–334
LaRocque RC, Katz JT, Perruzzi P et al (2003) The utility of sputum induction for diagnosis of Pneumocystis pneumonia in immunocompromised patients without human immunodeficiency virus. Clin Infect Dis 37:1380–1383
Kovacs JA, Ng VL, Masur H et al (1988) Diagnosis of Pneumocystis carinii pneumonia: improved detection in sputum with use of monoclonal antibodies. New Engl J Med 318:589–593
Wakefield AE, Miller RF, Guiver LA et al (1993) Oropharyngeal samples for detection of Pneumocystis carinii by DNA amplification. Int J Med 86:401–406
Helweg-Larsen J, Jensen JS, Lundgren B (1997) Non-invasive diagnosis of Pneumocystis carinii pneumonia by PCR on oral washes. Lancet 350:1363
Samuel CM, Whitelaw A, Corcoran C et al (2011) Improved detection of Pneumocystis jirovecii in upper and lower respiratory tract specimens from children with suspected pneumocystis pneumonia using real-time PCR: a prospective study. BMC Infect Dis 11:329
To KK, Wong SC, Xu T et al (2013) Use of nasopharyngeal aspirate for diagnosis of Pneumocystis pneumonia. J Clin Microbiol 51:1570–1574
Grocott RG (1955) A stain for fungi in tissue sections and smears using Gomori’s methenamine-silver nitrate technic. Am J Clin Pathol 25:975–979
Musto L, Flanigan M, Elbadawi A (1982) Ten-minute silver stain for Pneumocystis carinii and fungi in tissue sections. Arch Pathol Lab Med 106:292–294
Gosey LL, Howard RM, Witebsky FG et al (1985) Advantages of a modified toluidine blue O stain and bronchoalveolar lavage for the diagnosis of Pneumocystis carinii pneumonia. J Clin Microbiol 22:803–807
Baselski VS, Robison MK, Pifer LW et al (1990) Rapid detection of Pneumocystis carinii in bronchoalveolar lavage samples by using Cellufluor staining. J Clin Microbiol 28:393–394
Holten-Andersen W, Kolmos HJ (1989) Comparison of methenamine silver nitrate and Giemsa stain for detection of Pneumocystis carinii in bronchoalveolar lavage specimens from HIV infected patients. APMIS 97:745–747
Kovacs JA, Gill V, Swan JC et al (1986) Prospective evaluation of a monoclonal antibody in diagnosis of Pneumocystis carinii pneumonia. Lancet 2:1–3
Kovacs JA, Gill VJ, Meshnick S et al (2001) New insights into transmission, diagnosis, and drug treatment of Pneumocystis carinii pneumonia. J Am Med Assoc 286:2450–2460
Matos O, Esteves F (2016) Laboratory diagnosis of Pneumocystis jirovecii pneumonia. In: Kon K, Rai M (eds) Microbiology of respiratory system infection. Elsevier, Amsterdam, pp 185–210
Durand-Joly I, Chabé M, Soula F et al (2005) Molecular diagnosis of Pneumocystis pneumonia (PcP). FEMS Immunol Med Microbiol 45:405–410
Azoulay E, Bergeron A, Chevret S et al (2009) Polymerase chain reaction for diagnosing Pneumocystis pneumonia in non-HIV immunocompromised patients with pulmonary infiltrates. Chest 135:655–661
Respaldiza N, Montes-Cano MA, Friaza V et al (2006) Usefulness of oropharyngeal washings for identifying Pneumocystis jirovecii carriers. J Eukaryot Microbiol 53:100–101
Tsolaki AG, Miller RF, Wakefield AE (1999) Oropharyngeal samples for genotyping and monitoring response to treatment in AIDS patients with Pneumocystis carinii pneumonia. J Med Microbiol 48:897–905
Larsen HH, Huang L, Kovacs JA et al (2004) A prospective, blinded study of quantitative touch-down polymerase chain reaction using oral-wash samples for diagnosis of Pneumocystis pneumonia in HIV-infected patients. J Infect Dis 189:1679–1683
Esteves F, Calé SS, Badura R et al (2015) Diagnosis of Pneumocystis pneumonia: evaluation of four serologic biomarkers. Clin Microbiol Infect 21:379.e1–379.e10
Rohner P, Jacomo V, Studer R et al (2009) Detection of Pneumocystis jirovecii by two staining methods and two quantitative PCR assays. Infection 37:261–265
Vidal S, de la Horra C, Martín J et al (2006) Pneumocystis jirovecii colonisation in patients with interstitial lung disease. Clin Microbiol Infect 12:231–235
Wakefield AE, Pixley FJ, Banerji S (1990) Detection of Pneumocystis carinii with DNA amplification. Lancet 336:451–453
Totet A, Pautard JC, Raccurt C et al (2003) Genotypes at the internal transcribed spacers of the nuclear rRNA operon of Pneumocystis jiroveci in nonimmunosuppressed infants without severe pneumonia. J Clin Microbiol 41:1173–1180
Olsson M, Strålin K, Holmberg H (2001) Clinical significance of nested polymerase chain reaction and immunofluorescence for detection of Pneumocystis carinii pneumonia. Clin Microbiol Infect 7:492–497
Fan LC, Lu HW, Cheng KB et al (2013) Evaluation of PCR in bronchoalveolar lavage fluid for diagnosis of Pneumocystis jirovecii pneumonia: a bivariate meta-analysis and systematic review. PLoS One 8:e73099
Moonens F, Liesnard C, Brancart F et al (1995) Rapid simple and nested polymerase chain reaction for the diagnosis of Pneumocystis carinii pneumonia. Scand J Infect Dis 27:358–362
Thomas CF, Limper AH (2004) Pneumocystis pneumonia. N Engl J Med 350:2487–2498
Fillaux J, Malvy S, Alvarez M et al (2008) Accuracy of a routine real-time PCR assay for the diagnosis of Pneumocystis jirovecii pneumonia. J Microbiol Methods 75:258–261
Harris JR, Marston BJ, Sangrujee N et al (2011) Cost-effectiveness analysis of diagnostic options for Pneumocystis pneumonia (PCP). PLoS One 6:e23158
Botterel F, Cabaret O, Foulet F et al (2012) Clinical significance of quantifying Pneumocystis jirovecii DNA by using real-time PCR in bronchoalveolar lavage fluid from immunocompromised patients. J Clin Microbiol 50:227–231
McTaggart LR, Wengenack NL, Richardson SE (2012) Validation of the mycassay Pneumocystis kit for detection of Pneumocystis jirovecii in bronchoalveolar lavage specimens by comparison to a laboratory standard of direct immunofluorescence microscopy, real-time PCR, or conventional PCR. J Clin Microbiol 50:1856–1859
Larsen HH, Masur H, Kovacs JA et al (2002) Development and evaluation of a quantitative, touchdown, real-time PCR assay for diagnosing Pneumocystis carinii pneumonia. J Clin Microbiol 40:490–494
Montesinos I, Brancart F, Schepers K et al (2015) Comparison of 2 real-time PCR assays for diagnosis of Pneumocystis jirovecii pneumonia in human immunodeficiency virus (HIV) and non-HIV immunocompromised patients. Diagn Microbiol Infect Dis 82:143–147
Summah H, Zhu YG, Falagas ME et al (2013) Use of real-time polymerase chain reaction for the diagnosis of Pneumocystis pneumonia in immunocompromised patients: a meta-analysis. Chin Med J 126:1965–1973
Sasso M, Chastang-Dumas E, Bastide S et al (2016) Performances of four real-time PCR assays for the diagnosis of Pneumocystis jirovecii Pneumonia. J Clin Microbiol 54:625–630
Montesinos I, Delforge M-L, Ajjaham F et al (2017) Evaluation of a new commercial real-time PCR assay for diagnosis of Pneumocystis jirovecii pneumonia and identification of dihydropteroate synthase (DHPS) mutations. Diagn Microbiol Infect Dis 87(1):32–36
Lu JJ, Lee CH (2008) Pneumocystis pneumonia. J Formos Med Assoc 107:830–842
Depypere M, Saegeman V, Lagrou K (2016) Typing of Pneumocystis jirovecii by multiclocus sequencing: evidence of outbreak? Eur J Clin Microbiol Infect Dis 35:911–916
Schluger N, Sepkowitz K, Armstrong D et al (1991) Detection of Pneumocystis carinii in serum of AIDS patients with Pneumocystis pneumonia by the polymerase chain reaction. J Protozool 38:240S–242S
Lipschik GY, Gill VJ, Lundgren JD et al (1992) Improved diagnosis of Pneumocystis carinii infection by polymerase chain reaction on induced sputum and blood. Lancet 340:203–206
Roux P, Lavrard I, Poirot JL et al (1994) Usefulness of PCR for detection of Pneumocystis carinii DNA. J Clin Microbiol 32:2324–2326
Atzori C, Lu JJ, Jiang B et al (1995) Diagnosis of Pneumocystis carinii pneumonia in AIDS patients by using polymerase chain reactions on serum specimens. J Infect Dis 172:1623–1626
Tamburrini E, Mencarini P, Visconti E et al (1996) Detection of Pneumocystis carinii DNA in blood by PCR is not of value for diagnosis of P. carinii pneumonia. J Clin Microbiol 34:1586–1588
Matos O, Lundgren B, Caldeira L et al (1999) Evaluation of a nested PCR for detection of Pneumocystis carinii in serum from imunocompromised patients. J Eukaryot Microbiol 46:104S–105S
Rabodonirina M, Cotte L, Boibieux A et al (1999) Detection of Pneumocystis carinii DNA in blood specimens from human immunodeficiency virus-infected patients by nested PCR. J Clin Microbiol 37:127–131
Tasaka S, Hasegawa N, Kobayashi S et al (2007) Serum indicators for the diagnosis of Pneumocystis pneumonia. Chest 131:1173–1180
Finkelman MA (2010) Pneumocystis jirovecii infection: Cell wall (1-3)-D-glucan biology and diagnostic utility. Crit Rev Microbiol 36:271–281
Daly KR, Fichtenbaum CJ, Tanaka R et al (2002) Serologic responses to epitopes of the major surface glycoprotein of Pneumocystis jirovecii differ in human immunodeficiency virus-infected and uninfected persons. J Infect Dis 186:644–651
Daly KR, Koch J, Levin L et al (2004) Enzyme-linked immunosorbent assay and serologic responses to Pneumocystis jirovecii. Emerg Infect Dis 10:848–854
Djawe K, Huang L, Daly KR et al (2010) Serum antibody levels to the Pneumocystis jirovecii major surface glycoprotein in the diagnosis of P. jirovecii pneumonia in HIV+ patients. PLoS One 5:e14259
Gingo MR, Lucht L, Daly KR et al (2011) Serologic responses to Pneumocystis proteins in human immunodeficiency virus patients with and without Pneumocystis jirovecii pneumonia. J Acquir Immune Defic Syndr 57:190–196
Skelly MJ, Holzman RS, Merali S (2008) S-adenosylmethionine levels in the diagnosis of Pneumocystis carinii pneumonia in patients with HIV infection. Clin Infect Dis 46:467–471
Nakamura H, Tateyama M, Tasato D et al (2009) Clinical utility of serum β-d-glucan and KL-6 levels in Pneumocystis jirovecii pneumonia. Intern Med 48:195–202
Esteves F, Lee CH, de Sousa B et al (2014) (1-3)-beta-D-glucan in association with lactate dehydrogenase as biomarkers of Pneumocystis pneumonia (PcP) in HIV-infected patients. Eur J Clin Microbiol Infect Dis 33:1173–1180
Onishi A, Sugiyama D, Kogata Y et al (2012) Diagnostic accuracy of serum 1,3-beta-d-glucan for Pneumocystis jiroveci pneumonia, invasive candidiasis, and invasive aspergillosis: systematic review and meta-analysis. J Clin Microbiol 50:7–15
Karageorgopoulos DE, Qu JM, Korbila IP et al (2013) Accuracy of beta-d-glucan for the diagnosis of Pneumocystis jirovecii pneumonia: a meta-analysis. Clin Microbiol Infect 19:39–49
Li WJ, Guo YL, Liu TJ et al (2015) Diagnosis of pneumocystis pneumonia using serum (1-3)-β-Glucan: a bivariate meta-analysis and systematis review. Thorac Dis 7:2214–2225
Salerno D, Mushatt D, Myers L et al (2014) Serum and BAL beta-D-glucan for the diagnosis of Pneumocystis pneumonia in HIV positive patients. Respir Med 108:1688–1695
Stringer JR (2005) Surface antigens. In: Walzer PD, Cushion MT (eds) Pneumocystis pneumonia, 3rd edn. Marcel Dekker, New York, pp 95–126
Tomás AL, Cardoso F, Esteves F et al (2016) Serological diagnosis of pneumocystosis: production of a synthetic recombinant antigen for immunodetection of Pneumocystis jirovecii. Sci Rep. doi:10.1038/srep36287
Roger PM, Vandenbos F, Pugliese P et al (1998) Persistence of Pneumocystis carinii after effective treatment of P. carinii pneumonia is not related to relapse or survival among patients infected with human immunodeficiency virus. Clin Infect Dis 26:509–510
Cooley L, Dendle C, Wolf J et al (2014) Consensus guidelines for diagnosis, prophylaxis and management of Pneumocystis jirovecii pneumonia in patients with haematological and solid malignancies. Intern Med J 44:1350–1363
Masur H (1992) Prevention and treatment of Pneumocystis carinii pneumonia. N Engl J Med 327:1853–1860
Bozzette SA, Sattler FR, Chiu J et al (1990) California collaborative treatment group: a controlled trial of early adjunctive treatment with corticosteroids for Pneumocystis carinii pneumonia in the acquired immunodeficiency syndrome. N Engl J Med 323:1451–1457
Klein NC, Duncanson FP, Lenox TH et al (1992) Trimethoprim–sulfamethoxazole versus pentamidine for Pneumocystis carinii pneumonia in AIDS patients: results of a large prospective randomized treatment trial. AIDS 6:301–305
Toma E, Thorne A, Singer J et al (1998) The CTN-PCP Study Group. Clindamycin with primaquine vs trimethoprim-sulfamethoxazole therapy for mild and moderately severe Pneumocystis carinii pneumonia in patients with AIDS: a multicenter, double-blind, randomized trial (CTN 004). Clin Infect Dis 27:524–530
Hughes W, Leoung G, Kramer F et al (1993) Comparison of atovaquone (566C80) with trimethoprim-sulfamethoxazole to treat Pneumocystis carinii pneumonia in patients with AIDS. N Engl J Med 328:1521–1527
Safrin S, Finkelstein DM, Feinberg J et al (1996) Comparison of three regimens for treatment of mild to moderate Pneumocystis carinii pneumonia in patients with AIDS. A double-blind, randomized, trial of oral trimethoprim-sulfamethoxazole, dapsone-trimethoprim, and clindamycin-primaquine. ACTG 108 Study Group. Ann Intern Med 124:792–802
Tomblyn M, Chiller T, Einsele H et al (2009) Guidelines for preventing infectious complications among hematopoietic cell transplantation recipients: a global perspective. Biol Blood Marrow Transplant 15:1143–1238
Wang EH, Partovi N, Levy RD et al (2012) Pneumocystis pneumonia in solid organ transplant recipients: not yet an infection of the past. Transpl Infect Dis 14:519–525
Neumann S, Krause SW, Maschmeyer G et al (2013) Primary prophylaxis of bacterial infections and Pneumocystis jirovecii pneumonia in patients with hematological malignancies and solid tumors: guidelines of the Infectious Diseases Working Party (AGIHO) of the German Society of Hematology and Oncology (DGHO). Ann Hematol 92:433–442
Rahier JF, Ben-Horin S, Chowers Y et al (2009) European evidence-based consensus on the prevention, diagnosis and management of opportunistic infections in inflammatory bowel disease. J Crohns Colitis 3:47–91
Sowden E, Carmichael AJ (2004) Autoimmune inflammatory disorders, systemic corticosteroids and pneumocystis pneumonia: a strategy for prevention. BMC Infect Dis 4:42
Green H, Paul M, Vidal L et al (2007) Prophylaxis of Pneumocystis pneumonia in immunocompromised non-HIV-infected patients: systematic review and meta-analysis of randomized controlled trials. Mayo Clin Proc 82:1052–1059
Centers for Disease Control and Prevention (1989) Guidelines for prophylaxis against Pneumocystis carinii pneumonia for persons infected with human immunodeficiency virus. MMWR Morb Mortal Wkly Rep 38:1–9
Bozzette SA, Finkelstein DM, Spector SA et al (1995) A randomized trial of three antipneumocystis agents in patients with advanced human immunodeficiency virus infection. NIAID AIDS Clinical Trials Group. N Engl J Med 332:693–699
Schneider MME, Hoepelman AIM, Eeftinck Schattenkerk JKM et al (1992) A controlled trial of aerosolized pentamidine or trimethoprim–sulfamethoxazole as primary prophylaxis against Pneumocystis carinii pneumonia in patients with human immunodeficiency virus infection. N Engl J Med 327:1836–1841
Schneider MME, Nielsen TL, Nelsing S et al (1995) Efficacy and toxicity of 2 doses of trimethoprim-sulfamethoxazole as primary prophylaxis against Pneumocystis carinii pneumonia in patients with human immunodeficiency virus. J Infect Dis 171:1632–1636
Masur H, Kaplan JE, Holmes KK (2002) Guidelines for preventing opportunistic infections among HIV-infected persons – 2002. Recommendations of the U.S. Public Health Service and the Infectious Diseases Society of America. Ann Intern Med 137:435–478
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2017 Springer International Publishing AG
About this chapter
Cite this chapter
Matos, O., Tomás, A.L., Antunes, F. (2017). Pneumocystis jirovecii and Pneumocystosis. In: Mora-Montes, H., Lopes-Bezerra, L. (eds) Current Progress in Medical Mycology. Springer, Cham. https://doi.org/10.1007/978-3-319-64113-3_7
Download citation
DOI: https://doi.org/10.1007/978-3-319-64113-3_7
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-64112-6
Online ISBN: 978-3-319-64113-3
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)