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Example Use Cases

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Book cover Web Microanalysis of Big Image Data

Abstract

This chapter describes three use cases that leverage the functionalities in WIPP. The use cases focus on the following problems:

  1. 1.

    Cell count and single cell detection

  2. 2.

    Stem cell colony growth computation

  3. 3.

    Feature variability analysis

In each of these use cases, we highlight the step-by-step procedure to solve each problem and then explore the output results.

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Notes

  1. 1.

    https://isg.nist.gov/deepzoomweb/software/wipp

References

  1. van der Walt, S., et al.: scikit-image: image processing in Python. Peer. J. 2, e453 (2014)

    Google Scholar 

  2. Schindelin, J., et al.: Fiji: an open-source platform for biological-image analysis. Nat. Methods. 9(7), 676–682 (2012)

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  3. I. NIST.: “Image Features,” web page, 2016. [Online]. Available: https://isg.nist.gov/deepzoomweb/stemcellfeatures. [Accessed: 31-Mar-2016]

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Authors and Affiliations

  1. National Institute of Standards and Technology, Gaithersburg, MD, USA

    Peter Bajcsy, Joe Chalfoun & Mylene Simon

Authors
  1. Peter Bajcsy
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  2. Joe Chalfoun
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  3. Mylene Simon
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© 2018 Springer International Publishing AG

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Bajcsy, P., Chalfoun, J., Simon, M. (2018). Example Use Cases. In: Web Microanalysis of Big Image Data. Springer, Cham. https://doi.org/10.1007/978-3-319-63360-2_3

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  • DOI: https://doi.org/10.1007/978-3-319-63360-2_3

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-63359-6

  • Online ISBN: 978-3-319-63360-2

  • eBook Packages: EngineeringEngineering (R0)

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