Abstract
Promoting resilience capacity in agroecosystems is a very promising strategy for the sustainable management of tree crops. Belowground biological communities provide a range of different environmental services, including food webs structure stability and biodiversity conservation in aggregates, that contribute to the maintenance of crop production and effectively respond to external disturbances caused by global change. Aboveground habitats rely on a range of resilient reactions driven by factors including soil biodiversity interacting with dominant plant community species. Nevertheless, the links between soil biodiversity and aboveground resilience in time and space have been only partially studied and defined. Aboveground resilience is known to act on decadal or longer time scales while belowground communities often react on a time scale of a few years. This is the reason why coupling of both resilient reactions has been poorly studied and needs more investigations. Aim of this review is to provide a perspective on the potential of these studies in the management of tree crops, by identifying main drivers and services underpinning the implementation of sustainable strategies.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Addiscott, T. M., & Mirza, N. A. (1998). New paradigms for modelling mass transfers in soils. Soil and Tillage Research, 47, 105–109.
Adeniyi, A. S. (2010). Effects of slash and burning on soil microbial diversity and abundance in the tropical rainforest ecosystem, Ondo State, Nigeria. African Journal of Plant Science, 4, 322–329.
Aerts, R., & Honnay, O. (2011). Forest restoration, biodiversity and ecosystem functioning. BMC Ecology, 11, 29.
Akkermans A., Hahn D., & Zoon F. (1989). Interactions between root symbionts, root pathogens and actinorhizal plants. Annals of Forest Science, 46(Suppl), 765s–771s.
Antle, J. M., Stoorvogel, J. J., & Valdivia, R. O. (2006). Multiple equilibria, soil conservation investments and the resilience of agricultural systems. Environment and Development Economics, 11, 477–492.
Bardgett, R. D. (2002). Causes and consequences of biological diversity in soil. Zoology, 105, 367–374.
Barnes, A. D., et al. (2014). Consequences of tropical land use for multitrophic biodiversity and ecosystem functioning. Nature Communications, 5, 5351.
Behie, S. W., Zelisko, P. M., & Bidochka, M. J. (2012). Endophytic insect-parasitic fungi translocate nitrogen directly from insects to plants. Science, 336, 1576–1577.
Bender, S. F., Wagg, C., & van der Heijden, M. G. A. (2016). An underground revolution: Biodiversity and soil ecological engineering for agricultural sustainability. Trends in Ecology and Evolution, 31, 440–452.
Bennett, J. A., et al. (2017). Plant-soil feedbacks and mycorrhizal type influence temperate forest population dynamics. Science, 355, 181–184.
Bignell D. E., et al. (2005). Below-ground biodiversity assessment: Developing a key functional group approach in best-bet alternatives to blash and burn. In C. A. Palm, S. A. Vosti, P. A. Sanchez, & P. J. Ericksen (Eds), Slash-and-burn agriculture: The search for alternatives (pp. 119–142). New York: Columbia University Press.
Bongers, T. (1990). The maturity index, an ecological measure of environmental disturbance based on nematode species composition. Oecologia, 83, 14–19.
Bongers, T., & Ferris, H. (1999). Nematode community structure as a bioindicator in environmental monitoring. Trends in Ecology and Evolution, 14, 224–228.
Bonkowski, M., & Roy, J. (2005). Soil microbial diversity and soil functioning affect competition among grasses in experimental microcosms. Oecologia, 143, 232–240.
Botero, C., Dor, R., McCain, C. M., & Safran, R. J. (2013). Environmental harshness is positively correlated with intraspecific divergence in mammals and birds. Molecular Ecology, 23, 259–268.
Brandon, K., Gorenflo, L. J., Rodrigues, A. S. L., & Waller, R. W. (2005). Reconciling biodiversity conservation, people, protected areas, and agricultural suitability in Mexico. World Development, 33, 1403–1418.
Brown, G. G., et al. (1999). Effects of earthworms on plana production in the tropics. In L. Brussaard & P. Hendrix (Eds.), Earthworm management in tropical agroecosystems. Lavelle P (pp. 87–147). Wallingford: CAB International Edition.
Brunner, I., Herzog, C., Dawes, M. A., Arend, M., & Sperisen, C. (2015). How tree roots respond to drought. Frontiers in Plant Science, 6, 547.
Brussaard, L., Pulleman, M. M., Ouédraogo, E., Abdoulaye Mando, A., & Sixe, J. (2007). Soil fauna and soil function in the fabric of the food web. Pedobiologia, 50, 447–462.
Canali, S., et al. (2009). Effect of different management strategies on soil quality of citrus orchards in Southern Italy. Soil Use and Management, 25, 34–42.
Carter, M. R. (2004). Researching structural complexity in agricultural soils. Soil and Tillage Research, 79, 1–6.
Chen, X., Yang, Y., & Tang, J. (2004). Species-diversified plant cover enhances orchard ecosystem resistance to climatic stress and soil erosion in subtropical hillside. Journal of the Zhejiang University Science, 5, 1191–1198.
Daniels, R. (2003). Impact of tea cultivation on anurans in the Western Ghats. Current Science, 85, 1415–1422.
De Deyn, G. B., & Van der Putten, W. H. (2005). Linking aboveground and belowground diversity. TRENDS in Ecology and Evolution, 20, 625–633.
Dhandapani, S. (2015). Biodiversity loss asoociated with oil palm plantations in Malaysia: Serving the need versus saving the nature. British Ecological Society, Agriculture Ecology Annual Conference, Queens University, Belfast, UK.
Eayre, C. G., Jaffee, B. A., & Zehr, E. I. (1987). Suppression of Criconemella xenoplax by the nematophagous fungus Hirsutella rhossiliensis. Plant Disease, 71, 832–834.
Elliott L.F., & Lynch J. M. (1994). Biodiversity and soil resilience. In: D. J. Greenland, & I. Szabolcs (Eds.), Soil resilience and sustainable land use (pp. 353–364). Wallingford: CAB International.
Ferris, H., & Bongers, T. (2006). Nematode indicators of organic enrichment. Journal of Nematology, 38, 3–12.
Fragoso, C., et al. (1997). Agricultural intensification, soil biodiversity and agroecosystem function in the tropics: The role of earthworms. Applied Soil Ecology, 6, 17–35.
Franca, S. C., Gomes-da-Costa, S. M., & Silveira, A. P. D. (2007). Microbial activity and arbuscular mycorrhizal fungal diversity in conventional and organic citrus orchards. Biological Agriculture and Horticulture, 25, 91–102.
Giller, P. S. (1996). The diversity of soil communities the ‘poor man’s tropical rain forest’. Biodiversity Conservation, 5, 135–168.
Giller, K. E., Beare, M. H., Lavelle, P., Izac, A. M. N., & Swift, M. J. (1997). Agricultural intensification, soil biodiversity and agroecosystem function. Applied Soil Ecology, 6, 3–16.
Gobbi, J. A. (2000). Is biodiversity-friendly coffee financially viable? An analysis of five different coffee production systems in western El Salvador. Ecological Economics, 33, 267–281.
Gordon, C., Manson, R., Sundberg, J., & Cruz-Angón, A. (2007). Biodiversity, profitability, and vegetation structure in a Mexican coffee agroecosystem. Agriculture, Ecosystems & Environment, 118, 256–266.
Gurr, G. M., Wratten, S. D., & Luna, J. M. (2003). Multi-function agricultural biodiversity: Pest management and other benefits. Basic Applied Ecology, 4, 107–116.
Hacquard, S., et al. (2013). Laser microdissection and microarray analysis of Tuber melanosporum ectomycorrhizas reveal functional heterogeneity between mantle and Hartig net compartments. Environmental Microbiology, 15, 1853–1869.
Hågvar, S. (1998). The relevance of the Rio-Convention on biodiversity to conserving the biodiversity of soils. Applied Soil Ecology, 9, 1–7.
Havlicek E., Mitchell E.A.D. 2014. Soils supporting biodiversity. In J. Dighton & J. A. Krumins (Eds.), Interactions in soil: Promoting plant growth (Biodiversity, Community and Ecosystems, Vol. 1, pp. 27–58). Dordrecht: Springer.
Hawksworth, D. L. (1991). The fungal dimension of diversity: Magnitude significance and conservation. Mycological Research, 95, 641–655.
Hawksworth, D. L. (2001). The magnitude of fungal diversity: The 1.5 million species estimate revisted. Mycological Research, 105, 1422–1431.
Head, I. M., Saunders, J. R., & Pickup, R. W. (1998). Microbial evolution, diversity, and ecology: A decade of ribosomal RNA analysis of uncultivated microorganisms. Microbial Ecology, 35, 1–21.
Hohberg, K. (2003). Soil nematode fauna of afforested mine sites: Genera distribution, trophic structure and functional guilds. Applied Soil Ecology, 22, 113–126.
Itoh, H., et al. (2014). Bacterial population succession and adaptation affected by insecticide application and soil spraying history. Frontiers in Microbiology, 5, 457.
Joschko, M., et al. (2006). Spatial analysis of earthworm biodiversity at the regional scale. Agriculture Ecosystems & Environment, 112, 367–380.
Kampichler, C. (1999). Fractal concepts in studies of soil fauna. Geoderma, 88, 283–300.
Kellenberger, E. (2001). Exploring the unknown: The silent revolution of microbiology. EMBO Reports, 2, 5–7.
Kennedy, A. C., & Smith, K. L. (1995). Soil microbial diversity and the sustainability of agricultural soils. Plant and Soil, 170, 75–86.
Lal, R. (1997). Degradation and resilience of soils. Philosophical Transactions of the Royal Society of London, B, 352, 997–1010.
Lavelle P., & Spain A.V. (2006). Soil ecology (2nd ed., 651p). Amsterdam: Kluwer Scientific Publications.
Lavelle, P., et al. (2004). Plant parasite control and soil fauna diversity. CR Academic Science Biology, 327, 629–638.
Lavelle, P., et al. (2006). Soil invertebrates and ecosystem services. European Journal of Soil Biology, 42, S3–S15.
Lavelle, P., et al. (2016). Ecosystem engineers in a self-organized soil: A review of concepts and future research questions. Soil Science, 181, 91–109.
Legendre, B., et al. (2014). Identification and characterisation of Xylella fastidiosa isolated from coffee plants in France. Journal of Plant Pathology, 96, S4.100.
Liang, W., Beattie, G. A. C., Meats, A., & Spooner-Hart, R. (2007). Impact on soil-dwelling arthropods in citrus orchards of spraying horticultural mineral oil, carbaryl or methidathion. Australian Journal of Entomology, 46, 79–85.
Lin, B. B. (2011). Resilience in agriculture through crop diversification: Adaptive management for environmental change. BioScience, 61, 183–193.
Loconsole, G., et al. (2016). Intercepted isolates of Xylella fastidiosa in Europe reveal novel genetic diversity. European Journal of Plant Pathology, 146, 85–94.
Martelli, G. P., Boscia, D., Porcelli, F., & Saponari, M. (2015). The olive quick decline syndrome in south-east Italy: A threatening phytosanitary emergency. European Journal of Plant Pathology, 144, 235–243.
Morris, E. K., et al. (2014). Choosing and using diversity indices: insights for ecological applications from the German Biodiversity Exploratories. Ecology and Evolution, 4, 3514–3524.
Obando, V. (2002). Biodiversidad en Costa Rica: Estado del Conocimiento y Gestión (76 pp). Santo Domingo, Heredia, Editorial INBio: MINAE-SINAC & INBio.
Oldeman, L. R., Hakkeling, R. T. A., & Sombroek, W. G. (1990). World map of the status of human induced soil degradation: Explanatory note. InWageningen, Netherlands: International Soil Reference and Information Centre (ISIRC) and Nairobi. Kenya: United Nations Environment Programme (UNEP).
Peeters, L. Y. K., Soto-Pinto, L., Perales, H., Montoya, G., & Ishiki, M. (2003). Coffee production, timber, and firewood in traditional and Inga-shaded plantations in Southern Mexico. Agriculture, Ecosystems and Environment, 95, 481–493.
Perfecto, I., Vandermeer, J., Mas, A., & Soto, P. L. (2005). Biodiversity, yield, and shade coffee certification. Ecological Economics, 54, 435–446.
Rasmann, S., et al. (2005). Recruitment of entomopathogenic nematodes by insect-damaged maize roots. Nature, 434, 732–737.
Roesch, L. F. W., et al. (2007). Pyrosequencing enumerates and contrasts soil microbial diversity. ISME Journal, 1, 283–290.
Rosello-Mora, R., et al. (2001). The species concept for prokaryotes. FEMS Microbiology Reviews, 25, 39–67.
Sanchez P.A., Palm C.A., Vosti S.A., Tomich T.P., Kasyoki J. 2005. Alternatives to slash and burn: Challenge and approaches of an International Consortium. In: C.A. Palm, S. A. Vosti, P. A. Sanchez, & P. J. Ericksen (Eds), Slash-and-burn agriculture: The search for alternatives (pp. 3–40). New York: Columbia University Press.
Saponari, M., et al. (2014). Infectivity and transmission of Xylella fastidiosa Salento strain by Philaenus spumarius L. (Hemiptera: Aphrophoridae) in Apulia, Italy. Journal of Economic Entomology, 107, 1316–1319.
Savilaakso, S., et al. (2014). Systematic review of effects on biodiversity from oil palm production. Environmental Evidence, 3, 4.
Schulz, B. (2006). Mutualistic interactions with fungal root endophytes. In B. Schulz, C. Boyle, & T. N. Sieber (Eds.), Microbial root endophytes (pp. 261–279). Berlin: Springer.
Schulz, B., & Boyle, C. (2005). The endophytic continuum. Mycological Research, 109, 661–686.
Schwartz, M. W., Bringham, C. A., Hoeksema, J. D., Lyons, K. G., Mills, M. H., & van Mantgem, P. J. (2000). Linking biodiversity to ecosystem function: implications for conservation ecology. Oecologia, 122, 297–305.
Soto-Pinto, L., Perfecto, I., & Caballero-Nieto, J. (2002). Shade over coffee: Its effects on berry borer, leaf rust and spontaneous herbs in Chiapas, Mexico. Agroforestry Systems, 55, 37–45.
Stirling, G. R., & Mankau, R. (1978). Dactylella oviparasitica, a new fungal parasite of Meloidogyne eggs. Mycologia, 70, 774–783.
Torsvik, V., Goksøyr, J., & Daae, F. L. (1990). High diversity in DNA of soil bacteria. Applied Environmental Microbiology, 56, 782–787.
Vijay, V., Pimm, S. L., Jenkins, C. N., & Smith, S. J. (2016). The impacts of oil palm on recent deforestation and biodiversity loss. PLOS ONE. doi:10.1371/journal.pone.0159668.
Wall, D. H., Bardgett, R. D., & Kelly, E. F. (2010). Biodiversity in the dark. Nature Geoscience, 3, 297–298.
Wall, D. H., Nielsen, U. N., & Six, J. (2015). Soil biodiversity and human health. Nature, 528, 69–76.
Wardle, D. A., & Jonsson, M. (2014). Long-term resilience of above- and belowground ecosystem components among contrasting ecosystems. Ecology, 95, 1836–1849.
Wilson, E. O. (2000). A global biodiversity map. Science, 289, 2279.
Yaap, B., Struebig, M. J., Paoli, G., & Pin Koh, L. (2010). Mitigating the biodiversity impacts of oil palm development. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources, 5, No. 019.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2017 Springer International Publishing AG
About this paper
Cite this paper
Ciancio, A., Gamboni, M. (2017). Soil Biodiversity and Tree Crops Resilience. In: Lukac, M., Grenni, P., Gamboni, M. (eds) Soil Biological Communities and Ecosystem Resilience. Sustainability in Plant and Crop Protection. Springer, Cham. https://doi.org/10.1007/978-3-319-63336-7_20
Download citation
DOI: https://doi.org/10.1007/978-3-319-63336-7_20
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-63335-0
Online ISBN: 978-3-319-63336-7
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)