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Open Molecular Science for the Open Science Cloud

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Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 10406))

Abstract

The Open Science Cloud project is getting off the ground within EINFRA 12 (a) under the joint action of EGI.eu, INDICO and EUDAT. To this end several pilots have been selected to provide its core services. In this paper, the characteristics of the (not selected for funding) Open Molecular Science pilot SUMO-Chem are described and further referring to two particularly innovative services: the distributed ab initio collaborative simulator of molecular processes GEMS and the prosumer based self evaluation handler of molecular knowledge e-tests.

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References

  1. New statements are constantly developed, such as the Amsterdam Call for Action on Open Science to be presented to the Dutch Presidency of the Council of the European Union in late May (2016)

    Google Scholar 

  2. https://okfn.org/about/. Accessed 18 Feb 2017

  3. https://cos.io/our-products/open-science-framework/. Accessed 18 Feb 2017

  4. Kacsuk, P., Terstyanszky, G., Balasko, A., Karoczkai, K., Farkas, Z.: Executing multi-workflow simulations on a mixed grid/cloud infrastructure using the SHIWA and SCI-BUS technology. Advances in Parallel Computing, vol. 23, pp. 141–160 (2013)

    Google Scholar 

  5. Krueger, J., Grunzke, J.R., Gesing, S., Breuers, S., Brinkmann, A., de la Garza, L., Kohlbacher, O., Kruse, M., Nagel, W.E., Packschies, L., Mueller-Pfefferkorn, R., Schaefer, P., Schaerfe, C., Steinke, T., Schlemmer, T., Warzecha, K., Zink, A., Herres-Pawlis, S.: The MoSGrid science gateway a complete solution for molecular simulations. J. Chem. Theory Comput. 10(6), 2232–2245 (2014). doi:10.1021/ct500159h

    Article  Google Scholar 

  6. Murray-Rust, P.: The blue obelisk. CDK News 2, 43–46 (2005)

    Google Scholar 

  7. Guha, R., Howard, M.T., Hutchison, G.R., Murray-Rust, P., Rzepa, H., Steinbeck, C., Wegner, J., Willighagen, E.L.: The blue obelisk-interoperability in chemical informatics. J. Chem. Inf. Model. 46(3), 991–998 (2006). doi:10.1021/ci050400b. PMID 16711717

    Article  Google Scholar 

  8. O’Boyle, N., Guha, R., Willighagen, E.L., Adams, S.E., Alvarsson, J., Bradley, J.C., Filippov, I.V., Hanson, R.M., Hanwell, M.D., Hutchinson, G.R., James, C.A., Jeliazkova, N., Lang, A., Langer, K.M., Lonie, D.C., Lowe, D.M., Pansanel, J., Pavlov, D., Spjuth, O., Steinbeck, C., Tenderholt, A.L., Theisen, T.J., Murray-Rust, P.: Open data, open source and open standards in chemistry: the blue obelisk five years on. J. Chem. Inf. 3 (2011)

    Google Scholar 

  9. https://indico.cern.ch/. Accessed 18 Feb 2017

  10. https://www.eudat.eu/. Accessed 18 Feb 2017

  11. https://www.egi.eu/. Accessed 18 Feb 2017

  12. https://www.openaire.eu. Accessed 18 Feb 2017

  13. https://www.egi.eu/about/newsletters/eoscpilot-getting-the-european-open-science-cloud-off-the-ground/. Accessed 18 Feb 2017

  14. http://www.cost.eu/COST_Actions/cmst/D23. Accessed 18 Feb 2017

  15. http://www.cost.eu/COST_Actions/cmst/D37. Accessed 18 Feb 2017

  16. Laganà, A., Riganelli, A., Gervasi, O.: On the structuring of the computational chemistry virtual organization COMPCHEM. In: Gavrilova, M., Gervasi, O., Kumar, V., Tan, C.J.K., Taniar, D., Laganá, A., Mun, Y., Choo, H. (eds.) ICCSA 2006. LNCS, vol. 3980, pp. 665–674. Springer, Heidelberg (2006). doi:10.1007/11751540_70

    Chapter  Google Scholar 

  17. Laganà, A.: Towards a CMMST VRC. VIRT&L-COMM.2.2012.2

    Google Scholar 

  18. http://www.euchems.eu/divisions/computationalchemistry.Html

  19. http://ectn-assoc.cpe.fr/

  20. A. Laganà, Research and innovation actions. chemistry, molecular & materials sciences and technologies virtual research environment (CMMST-VRE). VIRT&L-COMM.6.2014.1

    Google Scholar 

  21. Laganà, A.: The molecular science community for open science. VIRT&L-COMM.6.2016.6

    Google Scholar 

  22. Terstyanszky, G., Laganà, A., Cardini, G., Krueger, J., Stare, J., Bañares, L., Celino, M., de Joannon, M., Grunzke, R., Richter, R., Vianello, R., Herres-Pawlis, S.: The sumo-chem H2020 proposal, (VIRT&L-COMM. 6.2016 News September 16).http://www.hpc.unipg.it/ojs/index.php/virtlcomm/issue/view/17

  23. Laganà, A., Costantini, A., Gervasi, O., Faginas-Lago, N., Manuali, C., Rampino, S.: COMPCHEM: progress towards GEMS a grid empowered molecular simulator and beyond. J Grid Comput. 8, 71–86 (2010). doi:10.1007/s10723-010-9164-x

    Article  Google Scholar 

  24. Grunzke, R., Krueger, J., Jakel, R., Nagel, W.E., Herres-Pawlis, S., Hoffmann, A.: Metadata management in the MoSGrid science gateway - evaluation and the expansion of quantum chemistry support. J. Grid Comput. 1–13 (2016)

    Google Scholar 

  25. Birbara, P.J., Sribnik, F.: Development of an improved Sabatier reactor. Am. Soc. Mech. Eng. 7936, 1–10 (1979)

    Google Scholar 

  26. http://zacros.org/. Accessed 18 Feb 2017

  27. Martì Alliod, C.: Networked computing for ab initio modeling the chemical storage of alternative energy: second term report (December 2015 - February 2016) VIRT&L-COMM. 15.2016 News March 16. http://www.hpc.unipg.it/ojs/index.php/virtlcomm/issue/view/15

  28. Mueller-Krumbhaar, H., Binder, K.: Dynamic properties of the monte carlo method in statistical mechanics. J. Stat. Phys. 8, 1–24 (1973). doi:10.1007/BF01008440

    Article  Google Scholar 

  29. https://www.vasp.at/. Accessed 18 Feb 2017

  30. http://www.master-up.it/. Accessed 18 Feb 2017

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Acknowledgments

The authors acknowledge the support of COMPCHEM VO, CMMST VRC, EuCheMS, ITN-EJD-642294_TCCM and ECTN.

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Correspondence to Antonio Laganà .

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Laganà, A., Terstyanszky, G., Krüger, J. (2017). Open Molecular Science for the Open Science Cloud. In: Gervasi, O., et al. Computational Science and Its Applications – ICCSA 2017. ICCSA 2017. Lecture Notes in Computer Science(), vol 10406. Springer, Cham. https://doi.org/10.1007/978-3-319-62398-6_3

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  • DOI: https://doi.org/10.1007/978-3-319-62398-6_3

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-62397-9

  • Online ISBN: 978-3-319-62398-6

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