Skip to main content

Missing Data Completion Using Diffusion Maps and Laplacian Pyramids

  • Conference paper
  • First Online:
Book cover Computational Science and Its Applications – ICCSA 2017 (ICCSA 2017)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 10404))

Included in the following conference series:

Abstract

A challenging problem in machine learning is handling missing data, also known as imputation. Simple imputation techniques complete the missing data by the mean or the median values. A more sophisticated approach is to use regression to predict the missing data from the complete input columns. In case the dimension of the input data is high, dimensionality reduction methods may be applied to compactly describe the complete input. Then, a regression from the low-dimensional space to the incomplete data column can be constructed from imputation. In this work, we propose a two-step algorithm for data completion. The first step utilizes a non-linear manifold learning technique, named diffusion maps, for reducing the dimension of the data. This method faithfully embeds complex data while preserving its geometric structure. The second step is the Laplacian pyramids multi-scale method, which is applied for regression. Laplacian pyramids construct kernels of decreasing scales to capture finer modes of the data. Experimental results demonstrate the efficiency of our approach on a publicly available dataset.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Asif, M.T., Mitrovic, N., Garg, L., Dauwels, J., Jaillet, P.: Low-dimensional models for missing data imputation in road networks. In: IEEE International Conference on Acoustics, Speech and Signal Processing, pp. 3527–3531 (2013)

    Google Scholar 

  2. Belkin, M., Niyogi, P.: Laplacian eigenmaps for dimensionality reduction and data representation. Neural Comput. 15, 1373–1396 (2003)

    Article  MATH  Google Scholar 

  3. Belkin, M., Niyogi, P.: Semi-supervised learning on Riemannian manifolds. Mach. Learn. 56, 209–239 (2004)

    Article  MATH  Google Scholar 

  4. Chung, F.R.K.: Spectral Graph Theory. AMS Regional Conference Series in Mathematics (1997)

    Google Scholar 

  5. Coifman, R.R., Lafon, S.: Diffusion maps. Appl. Comput. Harmon. Anal. 21, 5–30 (2006)

    Article  MathSciNet  MATH  Google Scholar 

  6. Dsilva, C.J., Talmon, R., Rabin, N., Coifman, R.R., Kevrekidis, I.G.: Nonlinear intrinsic variables and state reconstruction in multiscale simulations. J. Chem. Phys. 139(18), 184109 (2013)

    Article  Google Scholar 

  7. Fernández, Á., Rabin, N., Fishelov, D., Dorronsoro, J.R.: Auto-adaptative laplacian pyramids for high-dimensional data analysis. arXiv preprint arXiv:1311.6594

  8. Fernández, Á., González, A.M., Díaz, J., Dorronsoro, J.R.: Diffusion maps for dimensionality reduction and visualization of meteorological data. Neurocomputing 163, 25–37 (2015)

    Article  Google Scholar 

  9. Fernández, Á., Rabin, N., Fishelov, D., Dorronsoro, J.R.: Auto-adaptive Laplacian Pyramids. In: 24th European Symposium on Artificial Neural Networks. Computational Intelligence and Machine Learning, ESANN, pp. 59–64, Bruges, Belgium (2016)

    Google Scholar 

  10. Huisman, M.: Missing data in behavioral science research: investigation of a collection of data sets. Kwant. Methoden 57, 69–93 (1998)

    Google Scholar 

  11. Little, J.A.R., Rubin, B.D.: Statistical Analysis with Missing Data, 2nd edn. Wiley, Hoboken (2002)

    MATH  Google Scholar 

  12. Nadler, B., Lafon, S., Coifman, R.R., Kevrekidis, I.G.: Diffusion maps, spectral clustering and eigenfunctions of Fokker-Planck operators. In: Neural Information Processing Systems (NIPS), vol. 18 (2005)

    Google Scholar 

  13. Nadler, B., Lafon, S., Coifman, R.R., Kevrekidis, I.G.: Diffusion maps, spectral clustering and reaction coordinate of dynamical systems. Appl. Comput. Harmon. Anal. 21, 113–127 (2006)

    Article  MathSciNet  MATH  Google Scholar 

  14. Pearson, K.: On lines and planes of closest fit to systems of points in space. Philos. Mag. 2(11), 559–572 (1901)

    Article  MATH  Google Scholar 

  15. Pierson, E., Yau, C.: ZIFA: dimensionality reduction for zero-inflated single-cell gene expression analysis. Genome Biol. 16, 241 (2015)

    Article  Google Scholar 

  16. http://archive.ics.uci.edu/ml/datasets

  17. UshaRani, Y., Sammulal, P.: An efficient disease prediction and classification using feature reduction based imputation technique. In: International Conference on Engineering & MIS (ICEMIS) (2016)

    Google Scholar 

  18. Rabin, N., Averbuch, A.: Detection of anomaly trends in dynamically evolving systems. In: 2010 AAAI Fall Symposium Series, pp. 44–49 (2010)

    Google Scholar 

  19. Rabin, N., Coifman, R.R.: Heterogeneous datasets representation and learning using diffusion maps and Laplacian pyramids. In: Proceedings of the 2012 SIAM International Conference on Data Mining, pp. 189–199 (2012)

    Google Scholar 

  20. Roweis, S.T., Saul, L.K.: Nonlinear dimensionality reduction by locally linear embedding. Science 290, 2323–2326 (2000)

    Article  Google Scholar 

  21. Schclar, A.: A diffusion framework for dimensionality reduction. In: Maimon, O., Rokach, L. (eds.) Soft Computing for Knowledge Discovery and Data Mining, pp. 315–325. Springer, Heidelberg (2008). doi:10.1007/978-0-387-69935-6_13

    Chapter  Google Scholar 

  22. Zhao, Z., Giannakis, D.: Analog forecasting with dynamics-adapted kernels. Nonlinearity 29, 2888 (2016)

    Article  MathSciNet  MATH  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Dalia Fishelov .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer International Publishing AG

About this paper

Cite this paper

Rabin, N., Fishelov, D. (2017). Missing Data Completion Using Diffusion Maps and Laplacian Pyramids. In: Gervasi, O., et al. Computational Science and Its Applications – ICCSA 2017. ICCSA 2017. Lecture Notes in Computer Science(), vol 10404. Springer, Cham. https://doi.org/10.1007/978-3-319-62392-4_21

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-62392-4_21

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-62391-7

  • Online ISBN: 978-3-319-62392-4

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics