Skip to main content

Explaining Radiological Emphysema Subtypes with Unsupervised Texture Prototypes: MESA COPD Study

  • Conference paper
  • First Online:
Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging (BAMBI 2016, MCV 2016)

Abstract

Pulmonary emphysema is traditionally subcategorized into three subtypes, which have distinct radiological appearances on computed tomography (CT) and can help with the diagnosis of chronic obstructive pulmonary disease (COPD). Automated texture-based quantification of emphysema subtypes has been successfully implemented via supervised learning of these three emphysema subtypes. In this work, we demonstrate that unsupervised learning on a large heterogeneous database of CT scans can generate texture prototypes that are visually homogeneous and distinct, reproducible across subjects, and capable of predicting accurately the three standard radiological subtypes. These texture prototypes enable automated labeling of lung volumes, and open the way to new interpretations of lung CT scans with finer subtyping of emphysema.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Global Strategy for the Diagnosis, Management and Prevention of COPD, Global Initiative for Chronic Obstructive Lung Disease (GOLD) (2016). http://www.goldcopd.org/

  2. Smith, B.M., Austin, J.H., Newell, J.D., D’Souza, B.M., Rozenshtein, A., Hoffman, E.A., Ahmed, F., Barr, R.G.: Pulmonary emphysema subtypes on computed tomography: the MESA COPD study. Am. J. Med. 127(1), 94.e7–94.e23 (2014)

    Article  Google Scholar 

  3. Dahl, M., Tybjaerg-Hansen, A., Lange, P., Vestbo, J., Nordestgaard, B.G.: Change in lung function and morbidity from chronic obstructive pulmonary disease in alpha1-antitrypsin MZ heterozygotes: a longitudinal study of the general population. Ann. Intern. Med. 136(4), 270–279 (2002)

    Article  Google Scholar 

  4. Shapiro, S.D.: Evolving concepts in the pathogenesis of chronic obstructive pulmonary disease. Clin. Chest Med. 21(4), 621–632 (2000)

    Article  Google Scholar 

  5. Barr, R.G., Berkowitz, E.A., Bigazzi, F., Bode, F., Bon, J., Bowler, R.P., Chiles, C., Crapo, J.D., Criner, G.J., Curtis, J.L.: A combined pulmonary-radiology workshop for visual evaluation of COPD: study design, chest CT findings and concordance with quantitative evaluation. COPD 9(2), 151–159 (2012)

    Article  Google Scholar 

  6. Xu, Y., Sonka, M., McLennan, G., Guo, J., Hoffman, E.: MDCT-based 3-D texture classification of emphysema and early smoking related lung pathologies. IEEE Trans. Med. Imaging 25(4), 464–475 (2006)

    Article  Google Scholar 

  7. Srensen, L., Shaker, S.B., De Bruijne, M.: Quantitative analysis of pulmonary emphysema using local binary patterns. IEEE Trans. Med. Imaging 29(2), 559–569 (2010)

    Article  Google Scholar 

  8. Gangeh, M.J., Sørensen, L., Shaker, S.B., Kamel, M.S., Bruijne, M., Loog, M.: A texton-based approach for the classification of lung parenchyma in CT images. In: Jiang, T., Navab, N., Pluim, J.P.W., Viergever, M.A. (eds.) MICCAI 2010. LNCS, vol. 6363, pp. 595–602. Springer, Heidelberg (2010). doi:10.1007/978-3-642-15711-0_74

    Chapter  Google Scholar 

  9. Asherov, M., Diamant, I., Greenspan, H.: Lung texture classification using bag of visual words. In: SPIE Medical Imaging, pp. 90352K–90352K-8. International Society for Optics and Photonics (2014)

    Google Scholar 

  10. Depeursinge, A., Foncubierta-Rodriguez, A., Van De Ville, D., Mller, H.: Three-dimensional solid texture analysis in biomedical imaging: review and opportunities. Med. Image Anal. 18(1), 176–196 (2014)

    Article  Google Scholar 

  11. Cheplygina, V., Sørensen, L., Tax, D.M.J., Bruijne, M., Loog, M.: Label stability in multiple instance learning. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9349, pp. 539–546. Springer, Cham (2015). doi:10.1007/978-3-319-24553-9_66

    Chapter  Google Scholar 

  12. Hame, Y., Angelini, E.D., Parikh, M.A., Smith, B.M., Hoffman, E.A., Barr, R.G., Laine, A.F.: Sparse sampling and unsupervised learning of lung texture patterns in pulmonary emphysema: MESA COPD study. In: IEEE 12th International Symposium on Biomedical Imaging (ISBI), pp. 109–113. IEEE (2015)

    Google Scholar 

  13. Csurka, G., Dance, C., Fan, L., Willamowski, J., Bray, C.: Visual categorization with bags of keypoints. In: Workshop on Statistical Learning in Computer Vision, vol. 1, pp. 1–2. ECCV (2004)

    Google Scholar 

  14. Sieren, J.P., Newell Jr., J.D., Barr, R.G., Bleecker, E.R., Burnette, N., Carretta, E.E., Couper, D., Goldin, J., Guo, J., Han, M.K.: SPIROMICS protocol for multicenter quantitative CT to phenotype the lungs. Am. J. Respir. Crit. Care Med. 194(7), 794–806 (2016)

    Article  Google Scholar 

  15. Roth, V., Lange, T., Braun, M., Buhmann, J.: A resampling approach to cluster validation. In: Härdle, W., Rönz, B. (eds.) Compstat, pp. 123–128. Physica, Heidelberg (2002)

    Chapter  Google Scholar 

  16. Lopez-Sastre, R.J.: Unsupervised robust feature-based partition ensembling to discover categories. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops, pp. 114–122 (2016)

    Google Scholar 

Download references

Acknowledgements

Funding provided by NIH/NHLBI R01-HL121270, R01-HL077612, RC1-HL100543, R01-HL093081 and N01-HC095159 through N01-HC-95169, UL1-RR-024156 and UL1-RR-025005.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Andrew F. Laine .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer International Publishing AG

About this paper

Cite this paper

Yang, J. et al. (2017). Explaining Radiological Emphysema Subtypes with Unsupervised Texture Prototypes: MESA COPD Study. In: Müller, H., et al. Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging. BAMBI MCV 2016 2016. Lecture Notes in Computer Science(), vol 10081. Springer, Cham. https://doi.org/10.1007/978-3-319-61188-4_7

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-61188-4_7

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-61187-7

  • Online ISBN: 978-3-319-61188-4

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics