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Multi-task Fully Convolutional Network for Brain Tumour Segmentation

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Medical Image Understanding and Analysis (MIUA 2017)

Part of the book series: Communications in Computer and Information Science ((CCIS,volume 723))

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Abstract

In this paper, a novel, multi-task fully convolutional network (FCN) architecture is proposed for automatic segmentation of brain tumour. The proposed network builds on the hierarchical relationship between tumour substructures with branch and leaf losses imposed and optimised simultaneously. The network takes multimodal MR images along with their symmetric-difference images as input and extracts multi-level contextual information, firstly by the branch losses which are then fed to the leaf loss in a combination stage. The model was evaluated on BRATS13 and BRATS15 datasets and results show that the proposed multi-task FCN outperforms single-task FCN on all sub-tasks. The method is among the most accurate available and its computational cost is relatively low at test time.

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References

  1. Menze, B.H., et al.: The multimodal brain tumour image segmentation benchmark (BRATS). Med. Imaging 34(10), 1993–2024 (2015)

    Google Scholar 

  2. Tustison, N.J., et al.: Optimal symmetric multimodal templates and concatenated random forests for supervised brain tumour segmentation (simplified) with ANTsR. Neuroinformatics 13(2), 209–225 (2015)

    Google Scholar 

  3. Pereira, S., et al.: Brain tumour segmentation using convolutional neural networks in MRI images. Med. Imaging 35(5), 1240–1251 (2016)

    Google Scholar 

  4. Havaei, M., et al.: Brain tumour segmentation with deep neural networks. Med. Image Anal. 35, 18–31 (2017)

    Google Scholar 

  5. Kamnitsas, K., et al.: Efficient multi-scale 3D CNN with fully connected CRF for accurate brain lesion segmentation. Med. Image Anal. 36, 61–78 (2017)

    Google Scholar 

  6. Simonyan, K., et al.: Very deep convolutional networks for large-scale image recognition. arXiv preprint arXiv:1409.1556 (2014)

  7. Shen, H., et al.: Efficient symmetry-driven fully convolutional network for multimodal brain tumour segmentation (2017). Submitted to ICIP

    Google Scholar 

  8. Kwon, D., Shinohara, R.T., Akbari, H., Davatzikos, C.: Combining generative models for multifocal glioma segmentation and registration. In: Golland, P., Hata, N., Barillot, C., Hornegger, J., Howe, R. (eds.) MICCAI 2014. LNCS, vol. 8673, pp. 763–770. Springer, Cham (2014). doi:10.1007/978-3-319-10404-1_95

    Google Scholar 

  9. Long, J., et al.: Fully convolutional networks for semantic segmentation. In: CVPR 2015 (2015)

    Google Scholar 

  10. Chen, L.-C., et al.: Semantic image segmentation with deep convolutional nets and fully connected CRFs. arXiv preprint arXiv:1412.7062 (2014)

  11. Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). doi:10.1007/978-3-319-24574-4_28

    Chapter  Google Scholar 

  12. Chen, H., et al.: Deep contextual networks for neuronal structure segmentation. In: AAAI 2016 (2016)

    Google Scholar 

  13. Chen, H., et al.: DCAN: deep contour-aware networks for accurate gland segmentation. In: CVPR 2016 (2016)

    Google Scholar 

  14. He, K., et al.: Delving deep into rectifiers: surpassing human-level performance on imagenet classification. In: ICCV 2015 (2015)

    Google Scholar 

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Correspondence to Haocheng Shen .

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Shen, H., Wang, R., Zhang, J., McKenna, S. (2017). Multi-task Fully Convolutional Network for Brain Tumour Segmentation. In: Valdés Hernández, M., González-Castro, V. (eds) Medical Image Understanding and Analysis. MIUA 2017. Communications in Computer and Information Science, vol 723. Springer, Cham. https://doi.org/10.1007/978-3-319-60964-5_21

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  • DOI: https://doi.org/10.1007/978-3-319-60964-5_21

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-60963-8

  • Online ISBN: 978-3-319-60964-5

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