Abstract
In over 27 years of genetic mapping of the soybean genome, a genetic map containing thousands of molecular markers, thousands of QTLs and dozens of genes was obtained. Currently, two soybean genome consensus maps are available—GmConsensus4.0 and GmComposite2003—and can be used as an anchor to map new genes or QTLs in soybean. All information on these genetic maps is available for consultation at SoyBase (http://soybase.org). Genetic map information can also be compared with the annotated genomic sequence of Williams 82 cultivar, so there are currently tools that can associate regions of genetic maps containing QTLs with the genetic sequences of the soybean genome (physical map). In addition, the new tools for high-density genotyping of SNP markers allow to obtain dozens or hundreds of thousands of markers at affordable costs and the development of linkage disequilibrium maps. Linkage disequilibrium maps allow better understanding of the structure of the soybean genome and the identification of molecular markers in linkage disequilibrium with QTLs. With the evolution of large-scale phenotyping tools (phenomics), along with high-resolution genetic maps, the genetic processes that regulate plant development can be better understood in the near future.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Akkaya, M.S., Shoemaker, R.C., Specht, J.E., Bhagwat, A.A., Cregan, P.B.: Integration of simple sequence repeat DNA marker into a soybean linkage map. Crop Sci. 35, 1439–1445 (1995)
Bucker IV, E.S., Thornsberry, J.M.: Plant molecular diversity and application to genomics. Curr. Opin. Plant Biol. 5, 107–111 (2002)
Choi, I.-Y., Hyten, D.L., Matukumalli, L.K., Song, Q.-J., Chaky, J.M., Quigley, C.V., Chase, K., Lark, K.G., Reiter, R.S., Yoon, M.-S., Hwang, E.-Y., Yi, S.-I., Young, N.D., Shoemaker, R.C., van Tassel, C.P., Specht, J.E., Cregam, P.B.: A soybean transcript map: gene distribution, haplotype and SNP analysis. Genetics. 176(1), 685–696 (2007)
Creagan, P.B., Jarvik, T., Bush, A.L., Shoemaker, R.C., Lark, K.G., Kahler, A.L., Kaya, N., van Toai, T.T., Lohnes, D.G., Chung, J.: An integrated genetic linkage map of the soybean genome. Crop Sci. 39, 1464–1490 (1999)
Dekkers, J.C.M., Hospital, F.: The use of molecular genetics in the improvement of agricultural populations. Nat. Rev. Genet. 3, 22–32 (2002)
Diers, B.W., Kein, P., Fehr, W.R., Shoemaker, R.C.: RFLP analysis of soybean seed protein and oil content. Theor. Appl. Genet. 83, 608–612 (1992)
Eathington, S.R., Crosbie, T.M., Edwards, M.D., Reiter, R.S., Bull, J.K.: Molecular marker in a commercial breeding program. Crop Sci. 47(S3), S154–S163 (2007)
Ferreira, A.R., Foutz, K.R., Keim, P.: Soybean genetic map of RAPD markers assigned to an existing scaffold RFLP map. J. Hered. 91, 392–396 (2000)
Grant, D., Nelson, R.T., Cannon, S.B., Shoemaker, R.C.: SoyBase, the USDA-ARS soybean genetics and genomics database. Nucleic Acids Res. 38(Suppl 1), D843–D846 (2010)
Keim, P., Diers, B.W., Olson, T.C., Shoemaker, R.C.: RFLP mapping in soybean: association between marker loci and variation in quantitative traits. Genetics. 126, 735–742 (1990)
Keim, P., Schuoo, J.M., Travis, S.E., Clayton, K., Zhu, T., Shi, L., Ferreira, A., Weeb, D.M.: A high-density soybean genetic map based on AFLP markers. Crop Sci. 37, 537–543 (1997)
Lande, R., Thompson, R.: Efficiency of marker-assisted selection in the improvement of quantitative traits. Genetics. 124, 743–756 (1990)
Lark, K.G., Weisemann, J.M., Matthews, B.F., Palmer, R., Chase, K., Macalma, T.: A genetic map of soybean (Glycine max L) using an using an interspecific cross of two cultivars: ‘Minsoy’ and ‘Noir I’. Theor. Appl. Genet. 86, 901–906 (1993)
Mansur, L.M., Orf, J.H., Chase, K., Jarvik, K., Cregan, P.B., Lark, K.G.: Genetic mapping of agronomic traits using recombinant inbreeds lines of soybean. Crop Sci. 36, 1327–1336 (1995)
Pritchard, J.K., Stephens, M., Donnelly, P.: Inference of population structure using multilocus genotype data. Genetics. 155, 945–959 (2000)
Rafalski, A., Tingey, S.: RFLP map of soybean (Glycine max). In: O’Brian, S.J. (ed.) Genetic Maps: Locus Maps of Complex Genomes, pp. 149–156. Cold Spring Harbor Laboratory Press, New York (1993)
Schuster, I., Cruz, C.D.: EstatÃstica genômica aplicada a populações derivadas de cruzamentos controlados, p. 568. Ed.UFV, Viçosa (2004)
Shoemaker, R.C., Olsen, T.C.: Molecular linkage map of soybean (Glycine max L. Merr). In: O’Brian, S.J. (ed.) Genetic Maps: Locus Maps of Complex Genomes, pp. 131–138. Cold Spring Harbor Laboratory Press, New York (1993)
Shoemaker, R.C., Specht, J.E.: Integration of the soybean molecular and classical genetic linkage group. Crop Sci. 35, 436–446 (1995)
Song, Q.J., Marek, L.F., Shoemaker, R.C., Lark, K.G., Concibido, V.C., Dellanay, X., Specht, J.E., Cregan, J.E.: A new integrated genetic linkage map of the soybean. Theor. Appl. Genet. 109, 122–128 (2004)
Sorkheh, K., Malysheva-Otto, L.V., Wirthensohn, M.G., Tarkesh-Esfahani, S., MartÃnez-Gómez, P.: Linkage disequilibrium, genetic association mapping and gene localization in crop plants. Genet. Mol. Biol. 31(4), 805–814 (2008)
Yamanaka, N., Ninomiya, S., Hoshi, M., Tsubokura, Y., Yano, M., Nagamura, Y., Sasaki, T., Harada, K.: An informative linkage map of soybean revels QTLs for flowering time, leaflet morphology and regions of segregation distortion. DNA Res. 8, 61–72 (2001)
Zeng, Z.B.: Precision mapping of quantitative trait loci. Genetics. 136, 1457–1468 (1994)
Zou, Y.L., Song, Q.J., Hyten, D.L., van Tassel, C.P., Matukumalli, L.K., Grimm, D.R., Hyat, S.M., Fickus, E.W., Young, N.D., Cregan, P.B.: Single nucleotide polymorphism in soybean. Genetics. 163, 1123–1134 (2003)
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2017 Springer International Publishing AG
About this chapter
Cite this chapter
Schuster, I. (2017). Soybean Genetic Mapping. In: Lopes da Silva, F., Borém, A., Sediyama, T., Ludke, W. (eds) Soybean Breeding. Springer, Cham. https://doi.org/10.1007/978-3-319-57433-2_13
Download citation
DOI: https://doi.org/10.1007/978-3-319-57433-2_13
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-57432-5
Online ISBN: 978-3-319-57433-2
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)