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System Modeling of Receptor-Induced Apoptosis

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TRAIL, Fas Ligand, TNF and TLR3 in Cancer

Part of the book series: Resistance to Targeted Anti-Cancer Therapeutics ((RTACT,volume 12))

Abstract

Receptor-induced apoptosis is a complex signal transduction pathway involving numerous protein–protein interactions and post-translational modifications. The response to death receptor stimulation varies significantly from one cell line to another and even from one cell to another within a given cell line. In this context, it is often difficult to assess whether the molecular mechanisms identified so far are sufficient to explain the rich quantitative observations now available, and to detect possible gaps in our understanding. This is precisely where computational systems biology approaches may contribute. In this chapter, we review studies done in this direction, focusing on those that provided a significant insight on the functioning of this complex pathway by tightly integrating experimental and computational approaches.

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References

  1. Hassan M, Watari H, AbuAlmaaty A, Ohba Y, Sakuragi N (2014) Apoptosis and molecular targeting therapy in cancer. Biomed Res Int 2014:150823–150845

    Google Scholar 

  2. Johnstone RW, Frew AJ, Smyth MJ (2008) The TRAIL apoptotic pathway in cancer onset, progression and therapy. Nat Rev Cancer 8:782–798. doi:10.1038/nrc2465

    Article  CAS  PubMed  Google Scholar 

  3. Ashkenazi A, Dixit VM (1999) Apoptosis control by death and decoy receptors. Curr Opin Cell Biol 11:255–260. doi:10.1016/S0955-0674(99)80034-9

    Article  CAS  PubMed  Google Scholar 

  4. Kimberley FC, Screaton GR (2004) Following a TRAIL: update on a ligand and its five receptors. Cell Res 14:359–372

    Article  CAS  PubMed  Google Scholar 

  5. Ashkenazi A (2008) Directing cancer cells to self-destruct with pro-apoptotic receptor agonists. Nat Rev Drug Discov 7:1001–1012

    Article  CAS  PubMed  Google Scholar 

  6. Taylor RC, Cullen SP, Martin SJ (2008) Apoptosis: controlled demolition at the cellular level. Nat Rev Mol Cell Biol 9:231–241

    Article  CAS  PubMed  Google Scholar 

  7. Youle RJ, Strasser A (2008) The BCL-2 protein family: opposing activities that mediate cell death. Nat Rev Mol Cell Biol 9:47–59

    Article  CAS  PubMed  Google Scholar 

  8. Wiezorek J, Holland P, Graves J (2010) Death receptor agonists as a targeted therapy for cancer. Clin Cancer Res 16:1701–1708

    Article  CAS  PubMed  Google Scholar 

  9. Bentele M, Eils R (2005) Systems biology of apoptosis. In: Alberghina L, Westerhoff HV (eds) Systems biology (Stevenage). Springer, Berlin/Heidelberg, pp 349–372

    Chapter  Google Scholar 

  10. Bialik S, Zalckvar E, Ber Y, Rubinstein AD, Kimchi A (2010) Systems biology analysis of programmed cell death. Trends Biochem Sci 35:556–564

    Article  CAS  PubMed  Google Scholar 

  11. Lavrik IN (2010) Systems biology of apoptosis signaling networks. Curr Opin Biotechnol 21:551–555

    Article  CAS  PubMed  Google Scholar 

  12. Spencer SL, Sorger PK (2011) Measuring and modeling apoptosis in single cells. Cell 144:926–939

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. Schleich K, Lavrik IN (2013) Mathematical modeling of apoptosis. Cell Commun Signal 11:44

    Article  PubMed  PubMed Central  Google Scholar 

  14. Huber HJ, McKiernan RG, Prehn JHM (2014) Harnessing system models of cell death signalling for cytotoxic chemotherapy: towards personalised medicine approaches? J Mol Med 92:227–237

    Article  CAS  PubMed  Google Scholar 

  15. Lavrik IN (2014) Systems biology of death receptor networks: live and let die. Cell Death Dis 5:e1259

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Flusberg D, Sorger PK (2015) Surviving apoptosis: life-death signaling in single cells. Trends Cell Biol 25(8):446–458

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Flusberg DA, Roux J, Spencer SL, Sorger PK (2013) Cells surviving fractional killing by TRAIL exhibit transient but sustainable resistance and inflammatory phenotypes. Mol Biol Cell 24:2186–2200

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  18. Bertaux F, Stoma S, Drasdo D, Batt G (2014) Modeling dynamics of cell-to-cell variability in TRAIL-induced apoptosis explains fractional killing and predicts reversible resistance. PLoS Comput Biol 10:e1003893. doi:10.1371/journal.pcbi.1003893

    Article  PubMed  PubMed Central  Google Scholar 

  19. Fussenegger M, Bailey JE, Varner J (2000) A mathematical model of caspase function in apoptosis. Nat Biotechnol 18:768–774. doi:10.1038/77589

    Article  CAS  PubMed  Google Scholar 

  20. Eissing T, Conzelmann H, Gilles ED, Allgöwer F, Bullinger E, Scheurich P (2004) Bistability analyses of a caspase activation model for receptor-induced apoptosis. J Biol Chem 279:36892–36897. doi:10.1074/jbc.M404893200

    Article  CAS  PubMed  Google Scholar 

  21. Bentele M, Lavrik I, Ulrich M, Stösser S, Heermann DW, Kalthoff H, Krammer PH, Eils R (2004) Mathematical modeling reveals threshold mechanism in CD95-induced apoptosis. J Cell Biol 166:839–851

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  22. Goldstein JC, Waterhouse NJ, Juin P, Evan GI, Green DR (2000) The coordinate release of cytochrome c during apoptosis is rapid, complete and kinetically invariant. Nat Cell Biol 2:156–162

    Article  CAS  PubMed  Google Scholar 

  23. Tyas L, Brophy VA, Pope A, Rivett AJ, Tavare JM (2000) Rapid caspase-3 activation during apoptosis revealed using fluorescence-resonance energy transfer. EMBO Rep 1:266–270

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  24. Rehm M, Huber HJ, Dussmann H, Prehn JHM (2006) Systems analysis of effector caspase activation and its control by X-linked inhibitor of apoptosis protein. EMBO J 25:4338–4349

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  25. Albeck JG, Burke JM, Spencer SL, Lauffenburger DA, Sorger PK (2008) Modeling a snap-action, variable-delay switch controlling extrinsic cell death. PLoS Biol 6:2831–2852. doi:10.1371/journal.pbio.0060299

    Article  CAS  PubMed  Google Scholar 

  26. Albeck JG, Burke JM, Aldridge BB, Zhang M, DA L, Sorger PK (2008) Quantitative analysis of pathways controlling extrinsic apoptosis in single cells. Mol Cell 30:11–25. doi:10.1016/j.molcel.2008.02.012

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  27. Neumann L, Pforr C, Beaudouin J, Pappa A, Fricker N, Krammer PH, Lavrik IN, Eils R (2010) Dynamics within the CD95 death-inducing signaling complex decide life and death of cells. Mol Syst Biol 6:352. doi:10.1038/msb.2010.6

    Article  PubMed  PubMed Central  Google Scholar 

  28. Spencer SL, Gaudet S, Albeck JG, Burke JM, Sorger PK (2009) Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis. Nature 459:428–432. doi:10.1038/nature08012

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  29. Rehm M, Huber HJ, Hellwig CT, Anguissola S, Dussmann H, Prehn JHM (2009) Dynamics of outer mitochondrial membrane permeabilization during apoptosis. Cell Death Differ 16:613–623

    Article  CAS  PubMed  Google Scholar 

  30. Bhola PD, Simon SM (2009) Determinism and divergence of apoptosis susceptibility in mammalian cells. J Cell Sci 122:4296–4302. doi:10.1242/jcs.055590

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  31. Sigal A, Milo R, Cohen A, Geva-Zatorsky N, Klein Y, Liron Y, Rosenfeld N, Danon T, Perzov N, Alon U (2006) Variability and memory of protein levels in human cells. Nature 444:643–646. doi:10.1038/nature05316

    Article  CAS  PubMed  Google Scholar 

  32. Toivonen HT, Meinander A, Asaoka T, Westerlund M, Pettersson F, Mikhailov A, Eriksson JE, Saxén H (2011) Modeling reveals that dynamic regulation of c-FLIP levels determines cell-to-cell distribution of CD95-mediated apoptosis. J Biol Chem 286:18375–18382

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  33. Aldridge BB, Gaudet S, DA L, Sorger PK (2011) Lyapunov exponents and phase diagrams reveal multi-factorial control over TRAIL-induced apoptosis. Mol Syst Biol 7:1–21. doi:10.1038/msb.2011.85

    Google Scholar 

  34. Stoma S, Donzé A, Bertaux F, Maler O, Batt G (2013) STL-based analysis of TRAIL-induced apoptosis challenges the notion of type I/type II cell line classification. PLoS Comput Biol 9:e1003056. doi:10.1371/journal.pcbi.1003056

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  35. Schmid J, Dussmann H, Boukes GJ, Flanagan L, Lindner AU, O’Connor CL, Rehm M, Prehn JHM, Huber HJ (2012) Systems analysis of cancer cell heterogeneity in caspase-dependent apoptosis subsequent to mitochondrial outer membrane permeabilization. J Biol Chem 287:41546–41559

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  36. Passante E, Wurstle ML, Hellwig CT, Leverkus M, Rehm M (2013) Systems analysis of apoptosis protein expression allows the case-specific prediction of cell death responsiveness of melanoma cells. Cell Death Differ 20:1521–1531

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  37. Falschlehner C, Emmerich CH, Gerlach B, Walczak H (2007) TRAIL signalling: decisions between life and death. Int J Biochem Cell Biol 39:1462–1475. doi:10.1016/j.biocel.2007.02.007

    Article  CAS  PubMed  Google Scholar 

  38. Roux J, Hafner M, Bandara S, Sims JJ, Hudson H, Chai D, Sorger PK (2015) Fractional killing arises from cell-to-cell variability in overcoming a caspase activity threshold. Mol Syst Biol 11:803

    Article  PubMed  PubMed Central  Google Scholar 

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Acknowledgments

This work was supported by the research grants Syne2arti ANR-10-COSINUS-007 and Investissements d’Avenir Iceberg ANR-IABI-3096 from the French National Research Agency.

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Correspondence to François Bertaux or Grégory Batt .

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Bertaux, F., Drasdo, D., Batt, G. (2017). System Modeling of Receptor-Induced Apoptosis. In: Micheau, O. (eds) TRAIL, Fas Ligand, TNF and TLR3 in Cancer. Resistance to Targeted Anti-Cancer Therapeutics, vol 12. Springer, Cham. https://doi.org/10.1007/978-3-319-56805-8_12

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