Abstract
Plankton are fundamental and essential to marine ecosystem, and its survey is significant for sustainable development and ecosystem balance of oceans. The large amount of plankton species and complex relationship among different classes bring difficulty for us to design an automatic plankton classification system. Thus, we develop our model based on convolutional neural network and aim to overcome these shortages. We consider two different ways to extract global and local features to describe shape and texture information of plankton. Furthermore, we design a pyramid fully connected structure to merge different inner products from each sub networks. The experimental results prove our model can take advantage of multiple features and performs better than original convolutional neural network.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Lalli, C., Parsons, T.R.: Biological Oceanography: An Introduction. Butterworth-Heinemann, New York (1997)
Sardet, C.: Plankton: Wonders of the Drifting World. University of Chicago Press, Chicago (2015)
Reynaud, E.G. (ed.): Imaging Marine Life: Macrophotography and Microscopy Approaches for Marine Biology. Wiley, Hoboken (2013)
Davis, C.S., Thwaites, F.T., Gallager, S.M., Hu, Q.: A three-axis fast-tow digital video plankton recorder for rapid surveys of plankton taxa and hydrography. Limnolo.Ocean. Methods 3, 59–74 (2005)
Jaffe, J.S., Roberts, P.L.D., Ratelle, D., Laxton, B., Orenstein, E., Carter, M., Hilbern, M.: Scripps plankton camera system (2015)
Orenstein, E.C., Beijbom, O., Peacock, E.E., Sosik, H.M.: Whoi-plankton-a large scale fine grained visual recognition benchmark dataset for plankton classification. arXiv preprint arXiv:1510.00745 (2015)
Benfield, M.C., Grosjean, P., Culverhouse, P.F., Irigoien, X., Sieracki, M.E., Lopez-Urrutia, A., Dam, H.G., Hu, Q., Davis, C.S., Hansen, A., Pilskaln, C.H., Riseman, E.M., Schultz, H., Utgoff, P.E., Gorsky, G.: RAPID: research on automated plankton identification. Oceanography 20, 172–187 (2007)
MacLeod, N., Benfield, M., Culverhouse, P.: Time to automate identification. Nature 467, 154–155 (2010)
Erickson, J.S., Hashemi, N., Sullivan, J.M., Weidemann, A.D., Ligler, F.S.: In situ phytoplankton analysis: theres plenty of room at the bottom. Anal. Chem. 84, 839–850 (2011)
Samson, S., Hopkins, T., Remsen, A., Langebrake, L., Sutton, T., Patten, J.: A system for high-resolution zooplankton imaging. IEEE J. Ocean. Eng. 26, 671–676 (2001)
Tang, X., Stewart, W.K., Vincent, L., Huang, H., Marra, M., Gallager, S.M., Davis, C.S.: Automatic plankton image recognition. Artif. Intell. Biol. Agric. 12, 177–199 (1998)
Tang, X., Lin, F., Samson, S., Remsen, A.: Binary plankton image classification. IEEE J. Ocean.Eng. 31, 728–735 (2006)
Grosjean, P., Picheral, M., Warembourg, C., Gorsky, G.: Enumeration, measurement, and identification of net zooplankton samples using the zooscan digital imaging system. ICES J. Mar. Sci. J. Conseil 61, 518–525 (2004)
Gorsky, G., Ohman, M.D., Picheral, M., Gasparini, S., Stemmann, L., Romagnan, J.B., Cawood, A., Pesant, S., García-Comas, C., Prejger, F.: Digital zooplankton image analysis using the zooscan integrated system. J. Plankton Res. 32, 285–303 (2010)
Sosik, H.M., Olson, R.J.: Automated taxonomic classification of phytoplankton sampled with imaging-in-flow cytometry. Limnol. Oceanogr. Methods 5, 204–216 (2007)
Buf, H., Bayer, M.M.: Automatic Diatom Identification. World Scientific, Singapore (2002)
Culverhouse, P.F., Williams, R., Reguera, B., Herry, V., González-Gil, S.: Do experts make mistakes? A comparison of human and machine identification of dinoflagellates. Mar. Ecol. Prog. Ser. 247, 17–25 (2003)
Khosla, A., Jayadevaprakash, N., Yao, B., Li, F.F.: Novel dataset for fine-grained image categorization: stanford dogs. In: Proceedings of CVPR Workshop on Fine-Grained Visual Categorization (FGVC) (2011)
Srivastava, N., Hinton, G., Krizhevsky, A., Sutskever, I., Salakhutdinov, R.: Dropout: a simple way to prevent neural networks from overfitting. J. Mach. Learn. Res. 15, 1929–1958 (2014)
LeCun, Y., Bengio, Y., Hinton, G.: Deep learning. Nature 521, 436–444 (2015)
Krizhevsky, A., Sutskever, I., Hinton, G.E.: Imagenet classification with deep convolutional neural networks. In: Advances in neural information processing systems, pp. 1097–1105 (2012)
Zeiler, M.D., Fergus, R.: Visualizing and understanding convolutional networks. In: Fleet, D., Pajdla, T., Schiele, B., Tuytelaars, T. (eds.) ECCV 2014. LNCS, vol. 8689, pp. 818–833. Springer, Heidelberg (2014). doi:10.1007/978-3-319-10590-1_53
Simonyan, K., Zisserman, A.: Very deep convolutional networks for large-scale image recognition. arXiv preprint arXiv:1409.1556 (2014)
Fukushima, K.: Neocognitron: a self-organizing neural network model for a mechanism of pattern recognition unaffected by shift in position. Biol. Cybern. 36, 193–202 (1980)
LeCun, Y., Boser, B., Denker, J.S., Henderson, D., Howard, R.E., Hubbard, W., Jackel, L.D.: Backpropagation applied to handwritten zip code recognition. Neural Comput. 1, 541–551 (1989)
LeCun, Y., Bottou, L., Bengio, Y., Haffner, P.: Gradient-based learning applied to document recognition. Proc. IEEE 86, 2278–2324 (1998)
Zheng, H., Zhao, H., Sun, X., Gao, H., Ji, G.: Automatic setae segmentation from chaetoceros microscopic images. Microsc. Res. Tech. 77, 684–690 (2014)
Tomasi, C., Manduchi, R.: Bilateral filtering for gray and color images. In: 1998 Sixth International Conference on Computer Vision, pp. 839–846. IEEE (1998)
Scharr, H.: Optimal operators in digital image processing. Ph.D. thesis (2000)
Canny, J.: A computational approach to edge detection. IEEE Trans. Pattern Anal. Mach. Intell. 8, 679–698 (1986)
Szegedy, C., Liu, W., Jia, Y., Sermanet, P., Reed, S., Anguelov, D., Erhan, D., Vanhoucke, V., Rabinovich, A.: Going deeper with convolutions. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, pp. 1–9 (2015)
Jia, Y., Shelhamer, E., Donahue, J., Karayev, S., Long, J., Girshick, R., Guadarrama, S., Darrell, T.: Caffe: Convolutional architecture for fast feature embedding. arXiv preprint arXiv:1408.5093 (2014)
Acknowledgement
This work was supported by the National Natural Science Foundation of China under Grant Nos. 61271406, 61301240, and the Fundamental Research Funds for the Central Universities under Grant No. 201562023.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2017 Springer International Publishing AG
About this paper
Cite this paper
Dai, J., Yu, Z., Zheng, H., Zheng, B., Wang, N. (2017). A Hybrid Convolutional Neural Network for Plankton Classification. In: Chen, CS., Lu, J., Ma, KK. (eds) Computer Vision – ACCV 2016 Workshops. ACCV 2016. Lecture Notes in Computer Science(), vol 10118. Springer, Cham. https://doi.org/10.1007/978-3-319-54526-4_8
Download citation
DOI: https://doi.org/10.1007/978-3-319-54526-4_8
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-54525-7
Online ISBN: 978-3-319-54526-4
eBook Packages: Computer ScienceComputer Science (R0)