Abstract
Upstream processing has three important aspects: the fermentation media, the producer microorganism, and the fermentation process.
Optimization of the fermentation media is a vital aspect of process development and essential in ensuring maximization of yield and profit. Selection of suitable cost-effective carbon and energy sources and other essential nutrients is crucial.
Aspects associated with the producer microorganism include the strategy for initially obtaining a suitable microorganism, industrial strain improvement to enhance productivity and yield, maintenance of strain purity, preparation of suitable inoculum, and continuing development of selected strains to increase the economic efficiency of the process. Also important is selection of a microbial strain characterized by the ability to synthesize a specific product having a desired commercial value. This strain is then subjected to improvement protocols to maximize the ability of the strain to synthesize economical amounts of the product.
Fermentation is usually performed under rigorously controlled conditions optimized for growth of the microorganism or production of a target microbial product.
It is usually carried out in large tanks known as fermenters or bioreactors. In addition to the mechanical parts, which provide aeration, cooling, agitation, etc., tanks are usually also equipped with complex sets of monitors and control devices that maintain optimal conditions for microbial growth and product synthesis. Processing of the fermentation reactions inside the fermenter can be carried out using various engineering technologies. One of the most commonly used fermenter types is the stirred-tank fermenter, which utilizes mechanical agitation (mainly using radial-flow impellers) during the fermentation process.
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References
Bruggink A (1996) Biocatalysis and process integration in the synthesis of semi-synthetic antibiotics: biotechnology for industrial production of fine chemicals. Chimia 50:431–432
Borowitzka MA (1999) Pharmaceuticals and agrochemicals from microalgae. In: Cohen Z (ed) Chemicals from microalgae. Taylor & Francis, London, pp 313–352
Brain JBW (1998) Microbiology of fermented foods, vol 1 and 2, 2nd edn. Blackie Academic and Professional, London
http://www.howstuffworks.com/dictionary/biology-terms/fermentation-info.htm
Sandle T (2010) Selection of microbiological culture media and testing regimes. In: Saghee MR, Sandle T, Tidswell EC (eds) Microbiology and sterility assurance in pharmaceuticals and medical devices. Business Horizons, New Delhi, pp 101–120
Bridson E, Brecker A (1970) Design and formulation of microbiological culture media. In: J.R. Noris, D.W. Ribbons (eds) Methods in microbiology, 3A. London, Academic
Cundell A (2002) Review of media selection and incubation conditions for the compendial sterility and microbial limits tests. Pharm Forum 28:2034–2041
Sutton SVW (2005) Activities of the USP analytical microbiology expert committee during the 2000-2005 revision cycle. J Pharm Sci Technol 59:157–176
Barry AL, Fay GD (1972) A review of some common sources of error in the preparation of agar media. Am J Med Technol 38:241–245
Baird RM et al (1986) Pharmacopoeia of culture media for food microbiology. Elsevier Science, London
Sandle T (2003) Selection and use of cleaning and disinfection agents in pharmaceutical manufacturing. In: Hodges N, Hanlon G (eds) Industrial pharmaceutical microbiology standards and controls. Euromed Communications, England. (chapter revised on several occasions)
Sandle T (2014) The Media Kitchen: preparation and testing of microbiological culture media. In: Sutton S (ed) Laboratory design: establishing the facility and management structure. Parenteral Drug Association, Bethesda, MD, pp 269–293
Booth C (2006) Media fills—trial or triumph. Lab News Aug:16–17
Evans GL et al (1996) Quality assurance for commercially prepared microbiological culture media: approved standards, 2nd edn. National Committee for Clinical Laboratory Standards, Villanova, PA
Nagel JG, Kunz LJ (1973) Needless retesting of quality-assured commercially prepared culture media. Appl Microbiol 26:31–37
Snell JJS (1995) Preservation of control strains. In: Snell JJS, Brown DFB, Roberts C (eds) Quality assurance: principles and practice in the microbiology laboratory. Public Health Laboratory Service, London, pp 69–76
Brown MRW, Gilbert P (1995) Microbiological quality assurance: a guide towards relevance and reproducibility of inocula. CRC Press, Boca Raton, FL
Hunt GR, Stieber RW (1986) Inoculum development. In: Demain AL, Solomon NA (eds) Manual of industrial microbiology and biotechnology. ASM, Washington, DC, pp 32–40
Standbury PF, Whitakar A (1984) Principles of fermentaion technology. Pergamon Press, Oxford
Chang LT, Elander RP (1986) Long-term preservation of industrially important microorganisms. In: Demain AL, Solomon NA (eds) Manual of industrial microbiology and biotechnology. ASM, Washington, DC, pp 49–55
Monaghan RL et al (1999) Culture preservation and inoculum development. In: AL Demain, NA Solomon (eds-in-chief) Manual of industrial microbiology and biotechnology, 2nd ed. ASM, Washington, DC, pp 29-48
Lincoln RE (1960) Control of stock culture preservation and inoculum build-up in bacterial fermentation. J Biochem Microbiol Technol Eng 2:481–500
Webb C, Kamat SP (1993) Improving fermentation consistency through better inoculum preparation. World J Microbiol Biotechnol 9:308–312
McDaniel LE, Bailey EG (1968) Liquid nitrogen preservation of standard inoculum: gas-phase storage. Appl Microbiol 16:912–916
Gapes JR et al (1983) A note on procedures for inoculum development for the production of solvents by a strain of Clostrodium butylicum. J Appl Bacteriol 55:363–365
Gutierrez NA, Maddox IS (1987) The effect of some culture maintenance and inoculum development techniques on solvent production by Clostridium acetobutylicum. Can J Microbiol 33:82–84
Cheng K-K, Zhang J-A, Liu D-H, Sun Y, Liu H-J, Yang M-D, Xu J-M (2007) Pilot-scaleproduction of 1,3-propanediol using Klebsiella pneumonia. Process Biochem 42:740–744
Papagianni M (2004) Fungal morphology and metabolite production in submerged mycelia processes. Biotechnol Adv 22:189–259
Möller J et al (1992) The influence of preculture on the process performance of penicillin V production in a 100-1 air-lift tower loop reactor. Appl Microbiol Biotechnol 37:157–163
Gutiérrez-Correa M, Villena GK (2003) Surface adhesion fermentation: a new fermentation category. Revista Peruana de Biología 10:113–124
Villena G et al (2001) Cellulase production by fungal biofilms on polyester cloth. Agro Food Ind Hi Tec 12:32–35
Tengerdy RP (1992) Solid state cultivation of lignocelluloses. In: Doelle HW, Mitchell DA, Rolz CE (eds). Elsevier Science Publisher, London, pp 269–282
Crueger W, Crueger A (1984) Biotechnology: a textbook of industrial microbiology. Sinauer Associates, Sunderland
Ferenci T (2008) Bacterial physiology, regulation and mutational adaptation in a chemostat environment. Adv Microb Physiol 53:169–229
Trilli A (1986) Scale-up of fermentations. In: Demain AL, Solomon NA (eds) Manual of industrial microbiology and biotechnology. ASM, Washington, DC, pp 277–307
Ollis DF, Chang H-T (1982) Batch fermentation kinetics with (unstable) recombinant cultures. Biotechnol Bioeng 24:2583–2586
Atkinson B, Mavituna F (1983) Biochemical engineering and biotechnology handbook. Macmillan, Surrey
Martens J-H et al (2002) Microbial production of vitamin B12. Appl Microbiol Biotechnol 58:275–285
Bailey JE, Ollis DF (1986) Biochemical engineering fundamentals, 2nd edn. MaGraw-Hill, New York
Greasham R, Inamine E (1986) Nutritional improvement of processes. In: Demain AL, Sollamon NA (eds) Manual of industrial microbiology and biotechnology. ASM, Washington, DC, pp 41–48
Nichols HW, Bold HC (1965) Trichosarcina polymorpha gen Et sp. Nov. J Phycol 1:34–38
Nichols HW (1973) Growth media—freshwater. In: Stein J (ed) Handbook of phycological methods culture methods and growth measurements. Cambridge University Press, Cambridge, pp 7–24
Stanier RY et al (1971) Purification and properties of unicellular bluegreen algae (order Chroococcales). Bacteriol Rev 35:171–205
Annan-Prah A et al (2010) Afr J Microbiol Res 4:2626–2628
Tharmila EC et al (2011) Thavaranjit. Arch Appl Sci Res 3:389–393
Bader FG (1986) Sterilization: prevention of contamination. In: Demain AL, Solomon NA (eds) Manual of industrial microbiology and biotechnology. ASM, Washington, DC, pp 345–362
Cooney CL (1983) Bioreactors: design and operation. Science 219:728–733
Van’t Riet K, Tramper J (1991) Basic bioreactor design. Dekker, New York
Kapelli O (1986) Regulation of carbon metabolism in Saccharomyces cerevisiae and related yeasts. Adv Microb Physiol 28:181
Gaden EL Jr (1959) Fermentation process kinetics. J Biochem Microbiol Technol Eng 1:413–429
Catherine LW et al (2011) TARDIS-based microbial metabolomics: time and relative differences in systems. Trends Microbiol 19:315–322
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Kumara Behera, B., Varma, A. (2017). Upstream Processes. In: Microbial Biomass Process Technologies and Management. Springer, Cham. https://doi.org/10.1007/978-3-319-53913-3_2
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DOI: https://doi.org/10.1007/978-3-319-53913-3_2
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