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Modern Topics in the Phototrophic Prokaryotes pp 225–270Cite as

Proteome Analysis of Phototrophic Adaptation

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Abstract

For decades, cyanobacteria have been of great interest in research because their metabolic versatility and their capacity to adapt to a variety of environmental conditions have enabled cyanobacteria to colonize various habitats. Furthermore, the metabolic abilities of cyanobacteria also make them useful for human applications, and therefore, they have been extensively characterized. To understand more deeply the molecular basis for the underlying metabolic versatility, cyanobacteria have been subjected to various culture conditions (e.g., nutrient limitations, salt and high-light exposure), followed by characterization by molecular “omic” approaches. Here, we reviewed the proteomic approach and focused on its application in the characterization of the molecular ability through the phylum Cyanobacteria.

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Notes

  1. 1.

    Trypsine : proteolytic enzyme that cleaves proteins at the C-terminal side of lysine or arginine (unless the adjacent amino acid is a proline) (Baldwin 2003; Hustoft et al. 2012; Tsiatsiani and Heck 2015).

  2. 2.

    Sodium dodecyl sulphate (SDS) : anionic detergent that denatures, and coats proteins with a negative charge (Chevalier 2010).

  3. 3.

    Isoelectric point (pI): specific pH at which proteins exhibit a net charge of zero (Chevalier 2010).

  4. 4.

    Phycobiliproteins : water-soluble proteinaceous pigments containing covalently bound open-chain tetrapyrroles (Kumar and Murthy 2007; Singh et al. 2015; Tamary et al. 2012).

  5. 5.

    Linker polypeptides : key peptides in face-to-face aggregation of PBPs and stability of the PBS suprastructure (Guan et al. 2007; Kumar and Murthy 2007; Singh et al. 2015; Watanabe et al. 2012).

  6. 6.

    Carboxysomes : organelles accumulating large quantities of the enzyme ribulose 1,5-bisphosphate carboxylase/oxygenase in association with the carbon-concentrating mechanism proteins (Bazylinski et al. 2014; Castenholz et al. 2001; Garcia-Pichel 2009).

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Acknowledgements

Frédéric Deschoenmaeker is an F.R.I.A. PhD student. This manuscript was edited for proper English language by qualified native English speaking editors at American Journal Experts.

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  1. Department of Proteomic and Microbiology, Research Institute for Biosciences, University of Mons, Place du Parc 20, 7000, Mons, Belgium

    Frédéric Deschoenmaeker, Baptiste Leroy & Ruddy Wattiez

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  1. Frédéric Deschoenmaeker
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Correspondence to Ruddy Wattiez .

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  1. Department of Biology, Life Sciences Research Center, United States Air Force Academy, Colorado Springs, USA

    Patrick C. Hallenbeck

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Deschoenmaeker, F., Leroy, B., Wattiez, R. (2017). Proteome Analysis of Phototrophic Adaptation. In: Hallenbeck, P. (eds) Modern Topics in the Phototrophic Prokaryotes. Springer, Cham. https://doi.org/10.1007/978-3-319-51365-2_7

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