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Cells of the Immune System

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Part of the book series: Molecular and Integrative Toxicology ((MOLECUL))

Abstract

A broad array of cells with immunological function are subcategorized as innate immune cells, adaptive immune cells, or cells of non-immune organs that have secondary immunological functions. These subcategories are convenient for purposes of discussion, but extensive observations indicate there are many overlaps between cells of the various subcategories. Macrophages, in particular, occupy a functional space that is shared between the innate and adaptive immune systems. Macrophages, neutrophils, eosinophils, basophils, mast cells, and NK cells of the innate immune system are known to influence the immunological activities of the various lymphocyte populations of the adaptive immune system. Conversely, cells of the adaptive immune system commonly enhance, repress, guide or direct the activities of cells of the innate immune system. A general knowledge of the roles played by the various immune system cells is critical to understanding immunological responses, particularly those immunological responses that are commonly encountered in non-clinical toxicology studies. Histopathological evaluation of tissue specimens is a major component of the analysis of non-clinical toxicology studies, and relatively subtle shifts in cell populations in various tissues can have major implications with regard to xenobiotic-mediated effects. The aim of this chapter is to present an overview of immune system cells and their functions, with a focus on cells and actions that are commonly important in the analysis of non-clinical toxicology studies.

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References

  • Aaltonen J (1997) An autoimmune disease, APECED, caused by mutations in a novel gene featuring two PHD-type zinc-finger domains. Nat Genet 17:399–403

    Article  Google Scholar 

  • Abadie V, Badell E, Douillard P, Ensergueix D, Leenen PJ, Tanguy M, Fiette L, Saeland S, Gicquel B, Winter N (2005) Neutrophils rapidly migrate via lymphatics after Mycobacterium bovis BCG intradermal vaccination and shuttle live bacilli to the draining lymph nodes. Blood 106(5):1843–1850. doi:10.1182/blood-2005-03-1281

    Article  CAS  PubMed  Google Scholar 

  • Abi Abdallah DS, Denkers EY (2012) Neutrophils cast extracellular traps in response to protozoan parasites. Front Immunol 3:382. doi:10.3389/fimmu.2012.00382

    PubMed  Google Scholar 

  • Abi Abdallah DS, Egan CE, Butcher BA, Denkers EY (2011) Mouse neutrophils are professional antigen-presenting cells programmed to instruct Th1 and Th17 T-cell differentiation. Int Immunol 23(5):317–326. doi:10.1093/intimm/dxr007

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Abonia JP, Austen KF, Rollins BJ, Joshi SK, Flavell RA, Kuziel WA, Koni PA, Gurish MF (2005) Constitutive homing of mast cell progenitors to the intestine depends on autologous expression of the chemokine receptor CXCR2. Blood 105(11):4308–4313. doi:10.1182/blood-2004-09-3578

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Abraham SN, St John AL (2010) Mast cell-orchestrated immunity to pathogens. Nat Rev Immunol 10(6):440–452. doi:10.1038/nri2782

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ackerman SJ, Weil GJ, Gleich GJ (1982) Formation of Charcot–Leyden crystals by human basophils. J Exp Med 155(6):1597–1609

    Article  CAS  PubMed  Google Scholar 

  • Ahmed R, Gray D (1996) Immunological memory and protective immunity: understanding their relation. Science 272(5258):54–60

    Article  CAS  PubMed  Google Scholar 

  • Alghamdi AS, Foster DN (2005) Seminal DNase frees spermatozoa entangled in neutrophil extracellular traps. Biol Reprod 73(6):1174–1181. doi:10.1095/biolreprod.105.045666

    Article  CAS  PubMed  Google Scholar 

  • Ali G, Boldrini L, Lucchi M, Mussi A, Corsi V, Fontanini G (2009a) Tryptase mast cells in malignant pleural mesothelioma as an independent favorable prognostic factor. J Thorac Oncol 4(3):348–354. doi:10.1097/JTO.0b013e3181989ddb

    Article  PubMed  Google Scholar 

  • Ali G, Boldrini L, Lucchi M, Picchi A, Dell’Omodarme M, Prati MC, Mussi A, Corsi V, Fontanini G (2009b) Treatment with interleukin-2 in malignant pleural mesothelioma: immunological and angiogenetic assessment and prognostic impact. Br J Cancer 101(11):1869–1875. doi:10.1038/sj.bjc.6605438

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Alimzhanov MB, Kuprash DV, Kosco-Vilbois MH, Luz A, Turetskaya RL, Tarakhovsky A, Rajewsky K, Nedospasov SA, Pfeffer K (1997) Abnormal development of secondary lymphoid tissues in lymphotoxin beta-deficient mice. Proc Natl Acad Sci U S A 94(17):9302–9307

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Allen JR (1973) Tick resistance: basophils in skin reactions of resistant guinea pigs. Int J Parasitol 3(2):195–200

    Article  CAS  PubMed  Google Scholar 

  • Allen JR, Doube BM, Kemp DH (1977) Histology of bovine skin reactions to Ixodes holocyclus Neumann. Can J Comp Med 41(1):26–35

    CAS  PubMed  PubMed Central  Google Scholar 

  • Allen CD, Okada T, Tang HL, Cyster JG (2007) Imaging of germinal center selection events during affinity maturation. Science 315(5811):528–531. doi:10.1126/science.1136736

    Article  CAS  PubMed  Google Scholar 

  • Allman DM, Ferguson SE, Lentz VM, Cancro MP (1993) Peripheral B cell maturation. II. Heat-stable antigen(hi) splenic B cells are an immature developmental intermediate in the production of long-lived marrow-derived B cells. J Immunol 151(9):4431–4444

    CAS  PubMed  Google Scholar 

  • Amin K (2012) The role of mast cells in allergic inflammation. Respir Med 106(1):9–14. doi:10.1016/j.rmed.2011.09.007

    Article  PubMed  Google Scholar 

  • Amit I, Winter DR, Jung S (2015) The role of the local environment and epigenetics in shaping macrophage identity and their effect on tissue homeostasis. Nat Immunol 17(1):18–25. doi:10.1038/ni.3325

    Article  CAS  Google Scholar 

  • Amsen D, Blander JM, Lee GR, Tanigaki K, Honjo T, Flavell RA (2004) Instruction of distinct CD4 T helper cell fates by different notch ligands on antigen-presenting cells. Cell 117(4):515–526

    Article  CAS  PubMed  Google Scholar 

  • Amsen D, Antov A, Flavell RA (2009) The different faces of Notch in T-helper-cell differentiation. Nat Rev Immunol 9(2):116–124. doi:10.1038/nri2488

    Article  CAS  PubMed  Google Scholar 

  • Amulic B, Cazalet C, Hayes GL, Metzler KD, Zychlinsky A (2012) Neutrophil function: from mechanisms to disease. Annu Rev Immunol 30:459–489. doi:10.1146/annurev-immunol-020711-074942

    Article  CAS  PubMed  Google Scholar 

  • Anandasabapathy N, Victora GD, Meredith M, Feder R, Dong B, Kluger C, Yao K, Dustin ML, Nussenzweig MC, Steinman RM, Liu K (2011) Flt3L controls the development of radiosensitive dendritic cells in the meninges and choroid plexus of the steady-state mouse brain. J Exp Med 208(8):1695–1705. doi:10.1084/jem.20102657

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Anderson MS (2002) Projection of an immunological self shadow within the thymus by the Aire protein. Science 298:1395–1401

    Article  CAS  PubMed  Google Scholar 

  • Anderson SM, Tomayko MM, Ahuja A, Haberman AM, Shlomchik MJ (2007) New markers for murine memory B cells that define mutated and unmutated subsets. J Exp Med 204(9):2103–2114. doi:10.1084/jem.20062571

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ansel KM, Ngo VN, Hyman PL, Luther SA, Forster R, Sedgwick JD, Browning JL, Lipp M, Cyster JG (2000) A chemokine-driven positive feedback loop organizes lymphoid follicles. Nature 406(6793):309–314. doi:10.1038/35018581

    Article  CAS  PubMed  Google Scholar 

  • Arinobu Y, Iwasaki H, Gurish MF, Mizuno S, Shigematsu H, Ozawa H, Tenen DG, Austen KF, Akashi K (2005) Developmental checkpoints of the basophil/mast cell lineages in adult murine hematopoiesis. Proc Natl Acad Sci U S A 102(50):18105–18110

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Arita M, Clish CB, Serhan CN (2005) The contributions of aspirin and microbial oxygenase to the biosynthesis of anti-inflammatory resolvins: novel oxygenase products from omega-3 polyunsaturated fatty acids. Biochem Biophys Res Commun 338(1):149–157. doi:10.1016/j.bbrc.2005.07.181

    Article  CAS  PubMed  Google Scholar 

  • Artis D, Maizels RM, Finkelman FD (2012) Forum: immunology: allergy challenged. Nature 484(7395):458–459. doi:10.1038/484458a

    Article  CAS  PubMed  Google Scholar 

  • Asseman C, Mauze S, Leach MW, Coffman RL, Powrie F (1999) An essential role for interleukin 10 in the function of regulatory T cells that inhibit intestinal inflammation. J Exp Med 190(7):995–1004

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Auffray C, Fogg D, Garfa M, Elain G, Join-Lambert O, Kayal S, Sarnacki S, Cumano A, Lauvau G, Geissmann F (2007) Monitoring of blood vessels and tissues by a population of monocytes with patrolling behavior. Science 317(5838):666–670. doi:10.1126/science.1142883

    Article  CAS  PubMed  Google Scholar 

  • Baekkevold ES, Yamanaka T, Palframan RT, Carlsen HS, Reinholt FP, von Andrian UH, Brandtzaeg P, Haraldsen G (2001) The CCR7 ligand ELC (CCL19) is transcytosed in high endothelial venules and mediates T cell recruitment. J Exp Med 193(9):1105–1112

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bain CC, Bravo-Blas A, Scott CL, Gomez Perdiguero E, Geissmann F, Henri S, Malissen B, Osborne LC, Artis D, Mowat AM (2014) Constant replenishment from circulating monocytes maintains the macrophage pool in the intestine of adult mice. Nat Immunol 15(10):929–937. doi:10.1038/ni.2967

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bairoch A, Apweiler R (2000) The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res 28(1):45–48

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bajenoff M, Egen JG, Koo LY, Laugier JP, Brau F, Glaichenhaus N, Germain RN (2006) Stromal cell networks regulate lymphocyte entry, migration, and territoriality in lymph nodes. Immunity 25(6):989–1001. doi:10.1016/j.immuni.2006.10.011

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bajenoff M, Glaichenhaus N, Germain RN (2008) Fibroblastic reticular cells guide T lymphocyte entry into and migration within the splenic T cell zone. J Immunol 181(6):3947–3954

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Baker VS, Imade GE, Molta NB, Tawde P, Pam SD, Obadofin MO, Sagay SA, Egah DZ, Iya D, Afolabi BB, Baker M, Ford K, Ford R, Roux KH, Keller TC 3rd (2008) Cytokine-associated neutrophil extracellular traps and antinuclear antibodies in Plasmodium falciparum infected children under six years of age. Malar J 7:41. doi:10.1186/1475-2875-7-41

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Bald T, Quast T, Landsberg J, Rogava M, Glodde N, Lopez-Ramos D, Kohlmeyer J, Riesenberg S, van den Boorn-Konijnenberg D, Homig-Holzel C, Reuten R, Schadow B, Weighardt H, Wenzel D, Helfrich I, Schadendorf D, Bloch W, Bianchi ME, Lugassy C, Barnhill RL, Koch M, Fleischmann BK, Forster I, Kastenmuller W, Kolanus W, Holzel M, Gaffal E, Tuting T (2014) Ultraviolet-radiation-induced inflammation promotes angiotropism and metastasis in melanoma. Nature 507(7490):109–113. doi:10.1038/nature13111

    Article  CAS  PubMed  Google Scholar 

  • Balogh P, Aydar Y, Tew JG, Szakal AK (2002) Appearance and phenotype of murine follicular dendritic cells expressing VCAM-1. Anat Rec 268(2):160–168. doi:10.1002/ar.10148

    Article  CAS  PubMed  Google Scholar 

  • Baluk P, Fuxe J, Hashizume H, Romano T, Lashnits E, Butz S, Vestweber D, Corada M, Molendini C, Dejana E, McDonald DM (2007) Functionally specialized junctions between endothelial cells of lymphatic vessels. J Exp Med 204(10):2349–2362. doi:10.1084/jem.20062596

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Banchereau J, Steinman RM (1998) Dendritic cells and the control of immunity. Nature 392(6673):245–252. doi:10.1038/32588

    Article  CAS  PubMed  Google Scholar 

  • Bandeira-Melo C, Weller PF (2003) Eosinophils and cysteinyl leukotrienes. Prostaglandins Leukot Essent Fatty Acids 69(2–3):135–143

    Article  CAS  PubMed  Google Scholar 

  • Barbalat R, Lau L, Locksley RM, Barton GM (2009) Toll-like receptor 2 on inflammatory monocytes induces type I interferon in response to viral but not bacterial ligands. Nat Immunol 10(11):1200–1207. doi:10.1038/ni.1792

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Barrett NA, Austen KF (2009) Innate cells and T helper 2 cell immunity in airway inflammation. Immunity 31(3):425–437. doi:10.1016/j.immuni.2009.08.014

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bates EE, Fournier N, Garcia E, Valladeau J, Durand I, Pin JJ, Zurawski SM, Patel S, Abrams JS, Lebecque S, Garrone P, Saeland S (1999) APCs express DCIR, a novel C-type lectin surface receptor containing an immunoreceptor tyrosine-based inhibitory motif. J Immunol 163(4):1973–1983

    CAS  PubMed  Google Scholar 

  • Beauvillain C, Cunin P, Doni A, Scotet M, Jaillon S, Loiry ML, Magistrelli G, Masternak K, Chevailler A, Delneste Y, Jeannin P (2011) CCR7 is involved in the migration of neutrophils to lymph nodes. Blood 117(4):1196–1204. doi:10.1182/blood-2009-11-254490

    Article  CAS  PubMed  Google Scholar 

  • Becker TC, Coley SM, Wherry EJ, Ahmed R (2005) Bone marrow is a preferred site for homeostatic proliferation of memory CD8 T cells. J Immunol 174(3):1269–1273

    Article  CAS  PubMed  Google Scholar 

  • Beckman E, Porcelli S, Morita C, Behar S, Furlong S, Brenner M (1994) Recognition of a lipid antigen by CD1 restricted alpha-beta cells. Nature 372:391–394

    Article  Google Scholar 

  • Befus D (1986) Intestinal mast cell polymorphism: new research directions and clinical implications. J Pediatr Gastroenterol Nutr 5(4):517–521

    Article  CAS  PubMed  Google Scholar 

  • Behrendt JH, Ruiz A, Zahner H, Taubert A, Hermosilla C (2010) Neutrophil extracellular trap formation as innate immune reactions against the apicomplexan parasite Eimeria bovis. Vet Immunol Immunopathol 133(1):1–8. doi:10.1016/j.vetimm.2009.06.012

    Article  CAS  PubMed  Google Scholar 

  • Beiter K, Wartha F, Albiger B, Normark S, Zychlinsky A, Henriques-Normark B (2006) An endonuclease allows Streptococcus pneumoniae to escape from neutrophil extracellular traps. Curr Biol 16(4):401–407. doi:10.1016/j.cub.2006.01.056

    Article  CAS  PubMed  Google Scholar 

  • Bendelac A, Matzinger P, Seder RA, Paul WE, Schwartz RH (1992) Activation events during thymic selection. J Exp Med 175:731–742

    Article  CAS  PubMed  Google Scholar 

  • Bendelac A, Bonneville M, Kearney JF (2001) Autoreactivity by design: innate B and T lymphocytes. Nat Rev Immunol 1(3):177–186. doi:10.1038/35105052

    Article  CAS  PubMed  Google Scholar 

  • Bendelac A, Savage PB, Teyton L (2007) The biology of NKT cells. Annu Rev Immunol 25:297–336. doi:10.1146/annurev.immunol.25.022106.141711

    Article  CAS  PubMed  Google Scholar 

  • Benner R, Hijmans W, Haaijman JJ (1981) The bone marrow: the major source of serum immunoglobulins, but still a neglected site of antibody formation. Clin Exp Immunol 46(1):1–8

    CAS  PubMed  PubMed Central  Google Scholar 

  • Bentley SA, Alabaster O, Foidart JM (1981) Collagen heterogeneity in normal human bone marrow. Br J Haematol 48(2):287–291

    Article  CAS  PubMed  Google Scholar 

  • Berek C, Berger A, Apel M (1991) Maturation of the immune response in germinal centers. Cell 67(6):1121–1129

    Article  CAS  PubMed  Google Scholar 

  • Berends ET, Horswill AR, Haste NM, Monestier M, Nizet V, von Kockritz-Blickwede M (2010) Nuclease expression by Staphylococcus aureus facilitates escape from neutrophil extracellular traps. J Innate Immun 2(6):576–586. doi:10.1159/000319909

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Berzins SP, Ritchie DS (2014) Natural killer T cells: drivers or passengers in preventing human disease? Nat Rev Immunol 14(9):640–646. doi:10.1038/nri3725

    Article  CAS  PubMed  Google Scholar 

  • Berzofsky JA, Terabe M (2008) NKT cells in tumor immunity: opposing subsets define a new immunoregulatory axis. J Immunol 180(6):3627–3635

    Article  CAS  PubMed  Google Scholar 

  • Berzofsky JA, Terabe M, Oh S, Belyakov IM, Ahlers JD, Janik JE, Morris JC (2004) Progress on new vaccine strategies for the immunotherapy and prevention of cancer. J Clin Invest 113(11):1515–1525. doi:10.1172/JCI21926

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bevan MJ (1977) In a radiation chimaera, host H-2 antigens determine the immune responsiveness of donor cytotoxic cells. Nature 269:417–418

    Article  CAS  PubMed  Google Scholar 

  • Bhan AK, Reinherz EL, Poppema S, McCluskey RT, Schlossman SF (1980) Location of T cell and major histocompatibility complex antigens in the human thymus. J Exp Med 152:771–782

    Article  CAS  PubMed  Google Scholar 

  • Bhandoola A, von Boehmer H, Petrie HT, Zuniga-Pflucker JC (2007) Commitment and developmental potential of extrathymic and intrathymic T cell precursors: plenty to choose from. Immunity 26(6):678–689. doi:10.1016/j.immuni.2007.05.009

    Article  CAS  PubMed  Google Scholar 

  • Bilate AM, Lafaille JJ (2012) Induced CD4+Foxp3+ regulatory T cells in immune tolerance. Annu Rev Immunol 30:733–758. doi:10.1146/annurev-immunol-020711-075043

    Article  CAS  PubMed  Google Scholar 

  • Bischof A, Brumshagen C, Ding N, Kirchhof G, Briles DE, Gessner JE, Welte T, Mack M, Maus UA (2014) Basophil expansion protects against invasive pneumococcal disease in mice. J Infect Dis 210(1):14–24. doi:10.1093/infdis/jiu056

    Article  CAS  PubMed  Google Scholar 

  • Bischoff SC (2007) Role of mast cells in allergic and non-allergic immune responses: comparison of human and murine data. Nat Rev Immunol 7(2):93–104. doi:10.1038/nri2018

    Article  CAS  PubMed  Google Scholar 

  • Blasius AL, Beutler B (2010) Intracellular toll-like receptors. Immunity 32(3):305–315. doi:10.1016/j.immuni.2010.03.012

    Article  CAS  PubMed  Google Scholar 

  • Blatner NR, Bonertz A, Beckhove P, Cheon EC, Krantz SB, Strouch M, Weitz J, Koch M, Halverson AL, Bentrem DJ, Khazaie K (2010) In colorectal cancer mast cells contribute to systemic regulatory T-cell dysfunction. Proc Natl Acad Sci U S A 107(14):6430–6435. doi:10.1073/pnas.0913683107

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bluestone JA, Pardoll D, Sharrow SO, Fowlkes BJ (1987) Characterization of murine thymocytes with CD3-associated T-cell receptor structures. Nature 326(6108):82–84. doi:10.1038/326082a0

    Article  CAS  PubMed  Google Scholar 

  • Boldizsar F, Palinkas L, Czompoly T, Bartis D, Nemeth P, Berki T (2006) Low glucocorticoid receptor (GR), high Dig2 and low Bcl-2 expression in double positive thymocytes of BALB/c mice indicates their endogenous glucocorticoid hormone exposure. Immunobiology 211(10):785–796. doi:10.1016/j.imbio.2006.06.005

    Article  CAS  PubMed  Google Scholar 

  • Bonneville M, Scotet E (2006) Human Vgamma9Vdelta2 T cells: promising new leads for immunotherapy of infections and tumors. Curr Opin Immunol 18(5):539–546. doi:10.1016/j.coi.2006.07.002

    Article  CAS  PubMed  Google Scholar 

  • Bonneville M, O’Brien RL, Born WK (2010) Gammadelta T cell effector functions: a blend of innate programming and acquired plasticity. Nat Rev Immunol 10(7):467–478. doi:10.1038/nri2781

    Article  CAS  PubMed  Google Scholar 

  • Boros M, Takaichi S, Masuda J, Newlands GF, Hatanaka K (1995) Response of mucosal mast cells to intestinal ischemia-reperfusion injury in the rat. Shock 3(2):125–131

    Article  CAS  PubMed  Google Scholar 

  • Borregaard N (2010) Neutrophils, from marrow to microbes. Immunity 33(5):657–670. doi:10.1016/j.immuni.2010.11.011

    Article  CAS  PubMed  Google Scholar 

  • Borregaard N, Sorensen OE, Theilgaard-Monch K (2007) Neutrophil granules: a library of innate immunity proteins. Trends Immunol 28(8):340–345. doi:10.1016/j.it.2007.06.002

    Article  CAS  PubMed  Google Scholar 

  • Bottazzi B, Doni A, Garlanda C, Mantovani A (2010) An integrated view of humoral innate immunity: pentraxins as a paradigm. Annu Rev Immunol 28:157–183. doi:10.1146/annurev-immunol-030409-101305

    Article  CAS  PubMed  Google Scholar 

  • Bousso P, Bhakta NR, Lewis RS, Robey E (2002) Dynamics of thymocyte-stromal cell interactions visualized by two-photon microscopy. Science 296:1876–1880

    Article  CAS  PubMed  Google Scholar 

  • Bouwens L, Baekeland M, De Zanger R, Wisse E (1986) Quantitation, tissue distribution and proliferation kinetics of Kupffer cells in normal rat liver. Hepatology 6(4):718–722

    Article  CAS  PubMed  Google Scholar 

  • Bouwens L, Remels L, Baekeland M, Van Bossuyt H, Wisse E (1987) Large granular lymphocytes or “pit cells” from rat liver: isolation, ultrastructural characterization and natural killer activity. Eur J Immunol 17(1):37–42

    Article  CAS  PubMed  Google Scholar 

  • Bozza PT, Yu W, Penrose JF, Morgan ES, Dvorak AM, Weller PF (1997) Eosinophil lipid bodies: specific, inducible intracellular sites for enhanced eicosanoid formation. J Exp Med 186(6):909–920

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Brinkmann V, Zychlinsky A (2007) Beneficial suicide: why neutrophils die to make NETs. Nat Rev Microbiol 5(8):577–582. doi:10.1038/nrmicro1710

    Article  CAS  PubMed  Google Scholar 

  • Bronte V, Serafini P, Apolloni E, Zanovello P (2001) Tumor-induced immune dysfunctions caused by myeloid suppressor cells. J Immunother 24(6):431–446

    Article  CAS  PubMed  Google Scholar 

  • Bronte V, Serafini P, Mazzoni A, Segal DM, Zanovello P (2003) L-arginine metabolism in myeloid cells controls T-lymphocyte functions. Trends Immunol 24(6):302–306

    Article  CAS  PubMed  Google Scholar 

  • Buchanan JT, Simpson AJ, Aziz RK, Liu GY, Kristian SA, Kotb M, Feramisco J, Nizet V (2006) DNase expression allows the pathogen group A Streptococcus to escape killing in neutrophil extracellular traps. Curr Biol 16(4):396–400. doi:10.1016/j.cub.2005.12.039

    Article  CAS  PubMed  Google Scholar 

  • Buck MD, O’Sullivan D, Pearce EL (2015) T cell metabolism drives immunity. J Exp Med 212(9):1345–1360. doi:10.1084/jem.20151159

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Bujdoso R, Hopkins J, Dutia BM, Young P, McConnell I (1989) Characterization of sheep afferent lymph dendritic cells and their role in antigen carriage. J Exp Med 170(4):1285–1301

    Article  CAS  PubMed  Google Scholar 

  • Bulanova E, Bulfone-Paus S (2010) P2 receptor-mediated signaling in mast cell biology. Purinergic Signal 6(1):3–17. doi:10.1007/s11302-009-9173-z

    Article  CAS  PubMed  Google Scholar 

  • Burnstock G (2007) Purine and pyrimidine receptors. Cell Mol Life Sci 64(12):1471–1483. doi:10.1007/s00018-007-6497-0

    Article  CAS  PubMed  Google Scholar 

  • Butcher EC, Picker LJ (1996) Lymphocyte homing and homeostasis. Science 272(5258):60–66

    Article  CAS  PubMed  Google Scholar 

  • Butler PJ (1984) A defined structure of the 30 nm chromatin fibre which accommodates different nucleosomal repeat lengths. EMBO J 3(11):2599–2604

    CAS  PubMed  PubMed Central  Google Scholar 

  • Butz EA, Bevan MJ (1998) Massive expansion of antigen-specific CD8+ T cells during an acute virus infection. Immunity 8(2):167–175

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cailhier JF, Partolina M, Vuthoori S, Wu S, Ko K, Watson S, Savill J, Hughes J, Lang RA (2005) Conditional macrophage ablation demonstrates that resident macrophages initiate acute peritoneal inflammation. J Immunol 174(4):2336–2342

    Article  CAS  PubMed  Google Scholar 

  • Callan MF, Tan L, Annels N, Ogg GS, Wilson JD, O’Callaghan CA, Steven N, McMichael AJ, Rickinson AB (1998) Direct visualization of antigen-specific CD8+ T cells during the primary immune response to Epstein–Barr virus In vivo. J Exp Med 187(9):1395–1402

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cameron PU, Freudenthal PS, Barker JM, Gezelter S, Inaba K, Steinman RM (1992) Dendritic cells exposed to human immunodeficiency virus type-1 transmit a vigorous cytopathic infection to CD4+ T cells. Science 257(5068):383–387

    Article  CAS  PubMed  Google Scholar 

  • Campbell IK, Miescher S, Branch DR, Mott PJ, Lazarus AH, Han D, Maraskovsky E, Zuercher AW, Neschadim A, Leontyev D, McKenzie BS, Kasermann F (2014) Therapeutic effect of IVIG on inflammatory arthritis in mice is dependent on the Fc portion and independent of sialylation or basophils. J Immunol 192(11):5031–5038. doi:10.4049/jimmunol.1301611

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cantor H, Weissman I (1976) Development and function of subpopulations of thymocytes and T lymphocytes. Prog Allergy 20:1–64

    CAS  PubMed  Google Scholar 

  • Capucha T, Mizraji G, Segev H, Blecher-Gonen R, Winter D, Khalaileh A, Tabib Y, Attal T, Nassar M, Zelentsova K, Kisos H, Zenke M, Sere K, Hieronymus T, Burstyn-Cohen T, Amit I, Wilensky A, Hovav AH (2015) Distinct murine mucosal langerhans cell subsets develop from pre-dendritic cells and monocytes. Immunity 43(2):369–381. doi:10.1016/j.immuni.2015.06.017

    Article  CAS  PubMed  Google Scholar 

  • Card CM, Yu SS, Swartz MA (2014) Emerging roles of lymphatic endothelium in regulating adaptive immunity. J Clin Invest 124(3):943–952. doi:10.1172/JCI73316

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Carlin AF, Uchiyama S, Chang YC, Lewis AL, Nizet V, Varki A (2009) Molecular mimicry of host sialylated glycans allows a bacterial pathogen to engage neutrophil Siglec-9 and dampen the innate immune response. Blood 113(14):3333–3336. doi:10.1182/blood-2008-11-187302

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Carlin LM, Stamatiades EG, Auffray C, Hanna RN, Glover L, Vizcay-Barrena G, Hedrick CC, Cook HT, Diebold S, Geissmann F (2013) Nr4a1-dependent Ly6C(low) monocytes monitor endothelial cells and orchestrate their disposal. Cell 153(2):362–375. doi:10.1016/j.cell.2013.03.010

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Carlini MJ, Dalurzo MC, Lastiri JM, Smith DE, Vasallo BC, Puricelli LI, Lauria de Cidre LS (2010) Mast cell phenotypes and microvessels in non-small cell lung cancer and its prognostic significance. Hum Pathol 41(5):697–705. doi:10.1016/j.humpath.2009.04.029

    Article  CAS  PubMed  Google Scholar 

  • Carrasco YR, Batista FD (2007) B cells acquire particulate antigen in a macrophage-rich area at the boundary between the follicle and the subcapsular sinus of the lymph node. Immunity 27(1):160–171. doi:10.1016/j.immuni.2007.06.007

    Article  CAS  PubMed  Google Scholar 

  • Carroll SM, Mayrhofer G, Dawkins HJ, Grove DI (1984) Kinetics of intestinal lamina propria mast cells, globule leucocytes, intraepithelial lymphocytes, goblet cells and eosinophils in murine strongyloidiasis. Int Arch Allergy Appl Immunol 74(4):311–317

    Article  CAS  PubMed  Google Scholar 

  • Casbon AJ, Reynaud D, Park C, Khuc E, Gan DD, Schepers K, Passegue E, Werb Z (2015) Invasive breast cancer reprograms early myeloid differentiation in the bone marrow to generate immunosuppressive neutrophils. Proc Natl Acad Sci U S A 112(6):E566–E575. doi:10.1073/pnas.1424927112

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cash HL, Whitham CV, Behrendt CL, Hooper LV (2006) Symbiotic bacteria direct expression of an intestinal bactericidal lectin. Science 313(5790):1126–1130. doi:10.1126/science.1127119

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cassatella MA (1995) The production of cytokines by polymorphonuclear neutrophils. Immunol Today 16(1):21–26

    Article  CAS  PubMed  Google Scholar 

  • Cassatella MA (1999) Neutrophil-derived proteins: selling cytokines by the pound. Adv Immunol 73:369–509

    Article  CAS  PubMed  Google Scholar 

  • Castagliuolo I, Wershil BK, Karalis K, Pasha A, Nikulasson ST, Pothoulakis C (1998) Colonic mucin release in response to immobilization stress is mast cell dependent. Am J Physiol 274(6 Pt 1):G1094–G1100

    CAS  PubMed  Google Scholar 

  • Castagnaro L, Lenti E, Maruzzelli S, Spinardi L, Migliori E, Farinello D, Sitia G, Harrelson Z, Evans SM, Guidotti LG, Harvey RP, Brendolan A (2013) Nkx2-5(+)islet1(+) mesenchymal precursors generate distinct spleen stromal cell subsets and participate in restoring stromal network integrity. Immunity 38(4):782–791. doi:10.1016/j.immuni.2012.12.005

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Castello A, Hentze MW, Preiss T (2015) Metabolic enzymes enjoying new partnerships as RNA-binding proteins. Trends Endocrinol Metab 26(12):746–757. doi:10.1016/j.tem.2015.09.012

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cella M, Jarrossay D, Facchetti F, Alebardi O, Nakajima H, Lanzavecchia A, Colonna M (1999) Plasmacytoid monocytes migrate to inflamed lymph nodes and produce large amounts of type I interferon. Nat Med 5(8):919–923. doi:10.1038/11360

    Article  CAS  PubMed  Google Scholar 

  • Ceredig R, Rolink T (2002) A positive look at double-negative thymocytes. Nat Rev Immunol 2(11):888–897

    Article  CAS  PubMed  Google Scholar 

  • Ceredig R, Schreyer M (1984) Immunohistochemical localization of host and donor-derived cells in the regenerating thymus of radiation bone marrow chimeras. Thymus 6(1–2):15–26

    CAS  PubMed  Google Scholar 

  • Ceredig R, Dialynas DP, Fitch FW, MacDonald HR (1983) Precursors of T cell growth factor producing cells in the thymus: ontogeny, frequency, and quantitative recovery in a subpopulation of phenotypically mature thymocytes defined by monoclonal antibody GK-1.5. J Exp Med 158(5):1654–1671

    Article  CAS  PubMed  Google Scholar 

  • Chalifoux LV, King NW (1983) Eosinophilic myelocytoma in an owl monkey (Aotus trivirgatus). Lab Anim Sci 33(2):189–191

    CAS  PubMed  Google Scholar 

  • Cham CM, Driessens G, O’Keefe JP, Gajewski TF (2008) Glucose deprivation inhibits multiple key gene expression events and effector functions in CD8+ T cells. Eur J Immunol 38(9):2438–2450. doi:10.1002/eji.200838289

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chan JK, Fletcher CD, Nayler SJ, Cooper K (1997) Follicular dendritic cell sarcoma. Clinicopathologic analysis of 17 cases suggesting a malignant potential higher than currently recognized. Cancer 79(2):294–313

    Article  CAS  PubMed  Google Scholar 

  • Chang JE, Turley SJ (2015) Stromal infrastructure of the lymph node and coordination of immunity. Trends Immunol 36(1):30–39. doi:10.1016/j.it.2014.11.003

    Article  CAS  PubMed  Google Scholar 

  • Charles N, Hardwick D, Daugas E, Illei GG, Rivera J (2010) Basophils and the T helper 2 environment can promote the development of lupus nephritis. Nat Med 16(6):701–707. doi:10.1038/nm.2159

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chen HH, Lin JH, Fung HP, Ho LL, Yang PC, Lee WC, Lee YP, Chu RM (2003) Serum acute phase proteins and swine health status. Can J Vet Res 67(4):283–290

    CAS  PubMed  PubMed Central  Google Scholar 

  • Chen F, Wu W, Millman A, Craft JF, Chen E, Patel N, Boucher JL, Urban JF Jr, Kim CC, Gause WC (2014) Neutrophils prime a long-lived effector macrophage phenotype that mediates accelerated helminth expulsion. Nat Immunol 15(10):938–946. doi:10.1038/ni.2984

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cho OH, Shin HM, Miele L, Golde TE, Fauq A, Minter LM, Osborne BA (2009) Notch regulates cytolytic effector function in CD8+ T cells. J Immunol 182(6):3380–3389. doi:10.4049/jimmunol.0802598

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chow A, Lucas D, Hidalgo A, Mendez-Ferrer S, Hashimoto D, Scheiermann C, Battista M, Leboeuf M, Prophete C, van Rooijen N, Tanaka M, Merad M, Frenette PS (2011) Bone marrow CD169+ macrophages promote the retention of hematopoietic stem and progenitor cells in the mesenchymal stem cell niche. J Exp Med 208(2):261–271. doi:10.1084/jem.20101688

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chtanova T, Schaeffer M, Han SJ, van Dooren GG, Nollmann M, Herzmark P, Chan SW, Satija H, Camfield K, Aaron H, Striepen B, Robey EA (2008) Dynamics of neutrophil migration in lymph nodes during infection. Immunity 29(3):487–496. doi:10.1016/j.immuni.2008.07.012

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chu VT, Berek C (2013) The establishment of the plasma cell survival niche in the bone marrow. Immunol Rev 251(1):177–188. doi:10.1111/imr.12011

    Article  PubMed  CAS  Google Scholar 

  • Chu VT, Frohlich A, Steinhauser G, Scheel T, Roch T, Fillatreau S, Lee JJ, Lohning M, Berek C (2011) Eosinophils are required for the maintenance of plasma cells in the bone marrow. Nat Immunol 12(2):151–159. doi:10.1038/ni.1981

    Article  CAS  PubMed  Google Scholar 

  • Chuah C, Jones MK, Burke ML, Owen HC, Anthony BJ, McManus DP, Ramm GA, Gobert GN (2013) Spatial and temporal transcriptomics of Schistosoma japonicum-induced hepatic granuloma formation reveals novel roles for neutrophils. J Leukoc Biol 94(2):353–365. doi:10.1189/jlb.1212653

    Article  PubMed  CAS  Google Scholar 

  • Chyou S, Ekland EH, Carpenter AC, Tzeng TC, Tian S, Michaud M, Madri JA, Lu TT (2008) Fibroblast-type reticular stromal cells regulate the lymph node vasculature. J Immunol 181(6):3887–3896

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chyou S, Benahmed F, Chen J, Kumar V, Tian S, Lipp M, Lu TT (2011) Coordinated regulation of lymph node vascular-stromal growth first by CD11c+ cells and then by T and B cells. J Immunol 187(11):5558–5567. doi:10.4049/jimmunol.1101724

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ciofani M, Zúñiga-Pflücker JC (2005) Notch promotes survival of pre-T cells at the [beta]-selection checkpoint by regulating cellular metabolism. Nat Immunol 6:881–888

    Article  CAS  PubMed  Google Scholar 

  • Clarke TB, Davis KM, Lysenko ES, Zhou AY, Yu Y, Weiser JN (2010) Recognition of peptidoglycan from the microbiota by Nod1 enhances systemic innate immunity. Nat Med 16(2):228–231. doi:10.1038/nm.2087

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Clement CC, Cannizzo ES, Nastke MD, Sahu R, Olszewski W, Miller NE, Stern LJ, Santambrogio L (2010) An expanded self-antigen peptidome is carried by the human lymph as compared to the plasma. PLoS One 5(3):e9863. doi:10.1371/journal.pone.0009863

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Clement CC, Rotzschke O, Santambrogio L (2011) The lymph as a pool of self-antigens. Trends Immunol 32(1):6–11. doi:10.1016/j.it.2010.10.004

    Article  CAS  PubMed  Google Scholar 

  • Coffelt SB, Kersten K, Doornebal CW, Weiden J, Vrijland K, Hau CS, Verstegen NJ, Ciampricotti M, Hawinkels LJ, Jonkers J, de Visser KE (2015) IL-17-producing gammadelta T cells and neutrophils conspire to promote breast cancer metastasis. Nature 522(7556):345–348. doi:10.1038/nature14282

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Colombo M, Raposo G, Thery C (2014) Biogenesis, secretion, and intercellular interactions of exosomes and other extracellular vesicles. Annu Rev Cell Dev Biol 30:255–289. doi:10.1146/annurev-cellbio-101512-122326

    Article  CAS  PubMed  Google Scholar 

  • Colonna M, Samaridis J, Angman L (2000) Molecular characterization of two novel C-type lectin-like receptors, one of which is selectively expressed in human dendritic cells. Eur J Immunol 30(2):697–704. doi:10.1002/1521-4141(200002)30:2<697::AID-IMMU697>3.0.CO;2-M

    Article  CAS  PubMed  Google Scholar 

  • Coltey M (1989) Analysis of the first two waves of thymus homing stem cells and their T cell progeny in chick–quail chimeras. J Exp Med 170:543–557

    Article  CAS  PubMed  Google Scholar 

  • Corbett AJ, Eckle SB, Birkinshaw RW, Liu L, Patel O, Mahony J, Chen Z, Reantragoon R, Meehan B, Cao H, Williamson NA, Strugnell RA, Van Sinderen D, Mak JY, Fairlie DP, Kjer-Nielsen L, Rossjohn J, McCluskey J (2014) T-cell activation by transitory neo-antigens derived from distinct microbial pathways. Nature 509(7500):361–365. doi:10.1038/nature13160

    Article  CAS  PubMed  Google Scholar 

  • Corbin BD, Seeley EH, Raab A, Feldmann J, Miller MR, Torres VJ, Anderson KL, Dattilo BM, Dunman PM, Gerads R, Caprioli RM, Nacken W, Chazin WJ, Skaar EP (2008) Metal chelation and inhibition of bacterial growth in tissue abscesses. Science 319(5865):962–965. doi:10.1126/science.1152449

    Article  CAS  PubMed  Google Scholar 

  • Costantini C, Cassatella MA (2011) The defensive alliance between neutrophils and NK cells as a novel arm of innate immunity. J Leukoc Biol 89(2):221–233. doi:10.1189/jlb.0510250

    Article  CAS  PubMed  Google Scholar 

  • Cremasco V, Woodruff MC, Onder L, Cupovic J, Nieves-Bonilla JM, Schildberg FA, Chang J, Cremasco F, Harvey CJ, Wucherpfennig K, Ludewig B, Carroll MC, Turley SJ (2014) B cell homeostasis and follicle confines are governed by fibroblastic reticular cells. Nat Immunol 15(10):973–981. doi:10.1038/ni.2965

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Crivellato E, Nico B, Ribatti D (2008) Mast cells and tumour angiogenesis: new insight from experimental carcinogenesis. Cancer Lett 269(1):1–6. doi:10.1016/j.canlet.2008.03.031

    Article  CAS  PubMed  Google Scholar 

  • Cros J, Cagnard N, Woollard K, Patey N, Zhang SY, Senechal B, Puel A, Biswas SK, Moshous D, Picard C, Jais JP, D’Cruz D, Casanova JL, Trouillet C, Geissmann F (2010) Human CD14dim monocytes patrol and sense nucleic acids and viruses via TLR7 and TLR8 receptors. Immunity 33(3):375–386. doi:10.1016/j.immuni.2010.08.012

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Croswell A, Amir E, Teggatz P, Barman M, Salzman NH (2009) Prolonged impact of antibiotics on intestinal microbial ecology and susceptibility to enteric Salmonella infection. Infect Immun 77(7):2741–2753. doi:10.1128/IAI.00006-09

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cua DJ, Tato CM (2010) Innate IL-17-producing cells: the sentinels of the immune system. Nat Rev Immunol 10(7):479–489. doi:10.1038/nri2800

    Article  CAS  PubMed  Google Scholar 

  • Culshaw S, Millington OR, Brewer JM, McInnes IB (2008) Murine neutrophils present class II restricted antigen. Immunol Lett 118(1):49–54. doi:10.1016/j.imlet.2008.02.008

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cupedo T, Vondenhoff MF, Heeregrave EJ, De Weerd AE, Jansen W, Jackson DG, Kraal G, Mebius RE (2004) Presumptive lymph node organizers are differentially represented in developing mesenteric and peripheral nodes. J Immunol 173(5):2968–2975

    Article  CAS  PubMed  Google Scholar 

  • Curtsinger JM, Mescher MF (2010) Inflammatory cytokines as a third signal for T cell activation. Curr Opin Immunol 22(3):333–340. doi:10.1016/j.coi.2010.02.013

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cyster JG (2005) Chemokines, sphingosine-1-phosphate, and cell migration in secondary lymphoid organs. Annu Rev Immunol 23:127–159. doi:10.1146/annurev.immunol.23.021704.115628

    Article  CAS  PubMed  Google Scholar 

  • d’Ostiani CF, Del Sero G, Bacci A, Montagnoli C, Spreca A, Mencacci A, Ricciardi-Castagnoli P, Romani L (2000) Dendritic cells discriminate between yeasts and hyphae of the fungus Candida albicans. Implications for initiation of T helper cell immunity in vitro and in vivo. J Exp Med 191(10):1661–1674

    Article  PubMed  PubMed Central  Google Scholar 

  • Dabiri S, Huntsman D, Makretsov N, Cheang M, Gilks B, Bajdik C, Gelmon K, Chia S, Hayes M (2004) The presence of stromal mast cells identifies a subset of invasive breast cancers with a favorable prognosis. Mod Pathol 17(6):690–695. doi:10.1038/modpathol.3800094

    Article  PubMed  Google Scholar 

  • Dahlen B, Shute J, Howarth P (1999) Immunohistochemical localisation of the matrix metalloproteinases MMP-3 and MMP-9 within the airways in asthma. Thorax 54(7):590–596

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dahlin JS, Hallgren J (2015) Mast cell progenitors: origin, development and migration to tissues. Mol Immunol 63(1):9–17. doi:10.1016/j.molimm.2014.01.018

    Article  CAS  PubMed  Google Scholar 

  • Dao T, Mehal WZ, Crispe IN (1998) IL-18 augments perforin-dependent cytotoxicity of liver NK-T cells. J Immunol 161(5):2217–2222

    CAS  PubMed  Google Scholar 

  • Dasu MR, Cobb JP, Laramie JM, Chung TP, Spies M, Barrow RE (2004) Gene expression profiles of livers from thermally injured rats. Gene 327(1):51–60

    Article  CAS  PubMed  Google Scholar 

  • de Jong EC, Vieira PL, Kalinski P, Schuitemaker JH, Tanaka Y, Wierenga EA, Yazdanbakhsh M, Kapsenberg ML (2002) Microbial compounds selectively induce Th1 cell-promoting or Th2 cell-promoting dendritic cells in vitro with diverse th cell-polarizing signals. J Immunol 168(4):1704–1709

    Article  PubMed  Google Scholar 

  • de Paz JL, Moseman EA, Noti C, Polito L, von Andrian UH, Seeberger PH (2007) Profiling heparin-chemokine interactions using synthetic tools. ACS Chem Biol 2(11):735–744. doi:10.1021/cb700159m

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • de Vries VC, Pino-Lagos K, Nowak EC, Bennett KA, Oliva C, Noelle RJ (2011) Mast cells condition dendritic cells to mediate allograft tolerance. Immunity 35(4):550–561. doi:10.1016/j.immuni.2011.09.012

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Delamarre L, Pack M, Chang H, Mellman I, Trombetta ES (2005) Differential lysosomal proteolysis in antigen-presenting cells determines antigen fate. Science 307(5715):1630–1634. doi:10.1126/science.1108003

    Article  CAS  PubMed  Google Scholar 

  • den Haan JM, Martinez-Pomares L (2013) Macrophage heterogeneity in lymphoid tissues. Semin Immunopathol 35(5):541–552. doi:10.1007/s00281-013-0378-4

    Article  CAS  Google Scholar 

  • DeNardo DG, Barreto JB, Andreu P, Vasquez L, Tawfik D, Kolhatkar N, Coussens LM (2009) CD4(+) T cells regulate pulmonary metastasis of mammary carcinomas by enhancing protumor properties of macrophages. Cancer Cell 16(2):91–102. doi:10.1016/j.ccr.2009.06.018

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Denton AE, Roberts EW, Linterman MA, Fearon DT (2014) Fibroblastic reticular cells of the lymph node are required for retention of resting but not activated CD8+ T cells. Proc Natl Acad Sci U S A 111(33):12139–12144. doi:10.1073/pnas.1412910111

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Denzel A, Maus UA, Rodriguez Gomez M, Moll C, Niedermeier M, Winter C, Maus R, Hollingshead S, Briles DE, Kunz-Schughart LA, Talke Y, Mack M (2008) Basophils enhance immunological memory responses. Nat Immunol 9(7):733–742. doi:10.1038/ni.1621

    Article  CAS  PubMed  Google Scholar 

  • Derbinski J (2005) Promiscuous gene expression in thymic epithelial cells is regulated at multiple levels. J Exp Med 202:33–45

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dhodapkar MV (2009) Harnessing human CD1d restricted T cells for tumor immunity: progress and challenges. Front Biosci (Landmark Ed) 14:796–807

    Article  CAS  Google Scholar 

  • Diacovo TG, Blasius AL, Mak TW, Cella M, Colonna M (2005) Adhesive mechanisms governing interferon-producing cell recruitment into lymph nodes. J Exp Med 202(5):687–696. doi:10.1084/jem.20051035

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dieli F, Troye-Blomberg M, Ivanyi J, Fournie JJ, Krensky AM, Bonneville M, Peyrat MA, Caccamo N, Sireci G, Salerno A (2001) Granulysin-dependent killing of intracellular and extracellular Mycobacterium tuberculosis by Vgamma9/Vdelta2 T lymphocytes. J Infect Dis 184(8):1082–1085. doi:10.1086/323600

    Article  CAS  PubMed  Google Scholar 

  • Dieli F, Vermijlen D, Fulfaro F, Caccamo N, Meraviglia S, Cicero G, Roberts A, Buccheri S, D’Asaro M, Gebbia N, Salerno A, Eberl M, Hayday AC (2007) Targeting human {{gamma}delta} T cells with zoledronate and interleukin-2 for immunotherapy of hormone-refractory prostate cancer. Cancer Res 67(15):7450–7457. doi:10.1158/0008-5472.CAN-07-0199

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dogan I, Bertocci B, Vilmont V, Delbos F, Megret J, Storck S, Reynaud CA, Weill JC (2009) Multiple layers of B cell memory with different effector functions. Nat Immunol 10(12):1292–1299. doi:10.1038/ni.1814

    Article  CAS  PubMed  Google Scholar 

  • Doherty PC (1998) The numbers game for virus-specific CD8+ T cells. Science 280(5361):227

    Article  CAS  PubMed  Google Scholar 

  • Drayton DL, Liao S, Mounzer RH, Ruddle NH (2006) Lymphoid organ development: from ontogeny to neogenesis. Nat Immunol 7(4):344–353. doi:10.1038/ni1330

    Article  CAS  PubMed  Google Scholar 

  • Drexhage HA, Mullink H, de Groot J, Clarke J, Balfour BM (1979) A study of cells present in peripheral lymph of pigs with special reference to a type of cell resembling the Langerhans cell. Cell Tissue Res 202(3):407–430

    Article  CAS  PubMed  Google Scholar 

  • Drinker CK, Field ME, Ward HK (1934) The filtering capacity of lymph nodes. J Exp Med 59(4):393–405

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Du Toit G, Roberts G, Sayre PH, Bahnson HT, Radulovic S, Santos AF, Brough HA, Phippard D, Basting M, Feeney M, Turcanu V, Sever ML, Gomez Lorenzo M, Plaut M, Lack G, Team LS (2015) Randomized trial of peanut consumption in infants at risk for peanut allergy. N Engl J Med 372(9):803–813. doi:10.1056/NEJMoa1414850

    Article  CAS  PubMed  Google Scholar 

  • Dudal S, Turriere C, Bessoles S, Fontes P, Sanchez F, Liautard J, Liautard JP, Lafont V (2006) Release of LL-37 by activated human Vgamma9Vdelta2 T cells: a microbicidal weapon against Brucella suis. J Immunol 177(8):5533–5539

    Article  CAS  PubMed  Google Scholar 

  • Dudziak D, Kamphorst AO, Heidkamp GF, Buchholz VR, Trumpfheller C, Yamazaki S, Cheong C, Liu K, Lee HW, Park CG, Steinman RM, Nussenzweig MC (2007) Differential antigen processing by dendritic cell subsets in vivo. Science 315(5808):107–111. doi:10.1126/science.1136080

    Article  CAS  PubMed  Google Scholar 

  • Dunon D (1997) Ontogeny of the immune system: [gamma][delta] and [alpha][beta] T cells migrate from thymus to the periphery in alternating waves. J Exp Med 186:977–988

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dupuy AM, Terrier N, Senecal L, Morena M, Leray H, Canaud B, Cristol JP (2003) Is C-reactive protein a marker of inflammation? Nephrologie 24(7):337–341

    CAS  PubMed  Google Scholar 

  • Dusseaux M, Martin E, Serriari N, Peguillet I, Premel V, Louis D, Milder M, Le Bourhis L, Soudais C, Treiner E, Lantz O (2011) Human MAIT cells are xenobiotic-resistant, tissue-targeted, CD161hi IL-17-secreting T cells. Blood 117(4):1250–1259. doi:10.1182/blood-2010-08-303339

    Article  CAS  PubMed  Google Scholar 

  • Dzionek A, Sohma Y, Nagafune J, Cella M, Colonna M, Facchetti F, Gunther G, Johnston I, Lanzavecchia A, Nagasaka T, Okada T, Vermi W, Winkels G, Yamamoto T, Zysk M, Yamaguchi Y, Schmitz J (2001) BDCA-2, a novel plasmacytoid dendritic cell-specific type II C-type lectin, mediates antigen capture and is a potent inhibitor of interferon alpha/beta induction. J Exp Med 194(12):1823–1834

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Eberl G (2005) Inducible lymphoid tissues in the adult gut: recapitulation of a fetal developmental pathway? Nat Rev Immunol 5(5):413–420. doi:10.1038/nri1600

    Article  CAS  PubMed  Google Scholar 

  • Eberl G (2012) Development and evolution of RORgammat+ cells in a microbe’s world. Immunol Rev 245(1):177–188. doi:10.1111/j.1600-065X.2011.01071.x

    Article  CAS  PubMed  Google Scholar 

  • Eberle JU, Voehringer D (2016) Role of basophils in protective immunity to parasitic infections. Semin Immunopathol. doi:10.1007/s00281-016-0563-3

    PubMed  Google Scholar 

  • Egawa M, Mukai K, Yoshikawa S, Iki M, Mukaida N, Kawano Y, Minegishi Y, Karasuyama H (2013) Inflammatory monocytes recruited to allergic skin acquire an anti-inflammatory M2 phenotype via basophil-derived interleukin-4. Immunity 38(3):570–580. doi:10.1016/j.immuni.2012.11.014

    Article  CAS  PubMed  Google Scholar 

  • Egerton M, Scollay R, Shortman K (1990) Kinetics of mature T-cell development in the thymus. Proc Natl Acad Sci U S A 87:2579–2582

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Egesten A, Calafat J, Janssen H, Knol EF, Malm J, Persson T (2001) Granules of human eosinophilic leucocytes and their mobilization. Clin Exp Allergy 31(8):1173–1188

    Article  CAS  PubMed  Google Scholar 

  • Eggli P, Schaffner T, Gerber HA, Hess MW, Cottier H (1986) Accessibility of thymic cortical lymphocytes to particles translocated from the peritoneal cavity to parathymic lymph nodes. Thymus 8:129–139

    CAS  PubMed  Google Scholar 

  • Ehninger A, Trumpp A (2011) The bone marrow stem cell niche grows up: mesenchymal stem cells and macrophages move in. J Exp Med 208(3):421–428. doi:10.1084/jem.20110132

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • El Rayes T, Catena R, Lee S, Stawowczyk M, Joshi N, Fischbach C, Powell CA, Dannenberg AJ, Altorki NK, Gao D, Mittal V (2015) Lung inflammation promotes metastasis through neutrophil protease-mediated degradation of Tsp-1. Proc Natl Acad Sci U S A 112(52):16000–16005. doi:10.1073/pnas.1507294112

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • el-Hashimi W (1971) Charcot–Leyden crystals. Formation from primate and lack of formation from nonprimate eosinophils. Am J Pathol 65(2):311–324

    CAS  PubMed  PubMed Central  Google Scholar 

  • Ellyard JI, Avery DT, Mackay CR, Tangye SG (2005) Contribution of stromal cells to the migration, function and retention of plasma cells in human spleen: potential roles of CXCL12, IL-6 and CD54. Eur J Immunol 35(3):699–708. doi:10.1002/eji.200425442

    Article  CAS  PubMed  Google Scholar 

  • El-Refaie AM, Burt AD (2005) Mast cells and c-Kit expression in liver allograft rejection. Histopathology 47(4):375–381. doi:10.1111/j.1365-2559.2005.02239.x

    Article  PubMed  Google Scholar 

  • Elyaman W, Bassil R, Bradshaw EM, Orent W, Lahoud Y, Zhu B, Radtke F, Yagita H, Khoury SJ (2012) Notch receptors and Smad3 signaling cooperate in the induction of interleukin-9-producing T cells. Immunity 36(4):623–634. doi:10.1016/j.immuni.2012.01.020

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Endres R, Alimzhanov MB, Plitz T, Futterer A, Kosco-Vilbois MH, Nedospasov SA, Rajewsky K, Pfeffer K (1999) Mature follicular dendritic cell networks depend on expression of lymphotoxin beta receptor by radioresistant stromal cells and of lymphotoxin beta and tumor necrosis factor by B cells. J Exp Med 189(1):159–168

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Enerback L (1987) Mucosal mast cells in the rat and in man. Int Arch Allergy Appl Immunol 82(3–4):249–255

    Article  CAS  PubMed  Google Scholar 

  • Engering A, Geijtenbeek TB, van Vliet SJ, Wijers M, van Liempt E, Demaurex N, Lanzavecchia A, Fransen J, Figdor CG, Piguet V, van Kooyk Y (2002) The dendritic cell-specific adhesion receptor DC-SIGN internalizes antigen for presentation to T cells. J Immunol 168(5):2118–2126

    Article  CAS  PubMed  Google Scholar 

  • Erdman SE, Rao VP, Poutahidis T, Ihrig MM, Ge Z, Feng Y, Tomczak M, Rogers AB, Horwitz BH, Fox JG (2003) CD4(+)CD25(+) regulatory lymphocytes require interleukin 10 to interrupt colon carcinogenesis in mice. Cancer Res 63(18):6042–6050

    CAS  PubMed  Google Scholar 

  • Ermert D, Urban CF, Laube B, Goosmann C, Zychlinsky A, Brinkmann V (2009) Mouse neutrophil extracellular traps in microbial infections. J Innate Immun 1(3):181–193. doi:10.1159/000205281

    Article  CAS  PubMed  Google Scholar 

  • Estes JD, Haase AT, Schacker TW (2008) The role of collagen deposition in depleting CD4+ T cells and limiting reconstitution in HIV-1 and SIV infections through damage to the secondary lymphoid organ niche. Semin Immunol 20(3):181–186. doi:10.1016/j.smim.2008.04.002

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Estes JD, Reilly C, Trubey CM, Fletcher CV, Cory TJ, Piatak M Jr, Russ S, Anderson J, Reimann TG, Star R, Smith A, Tracy RP, Berglund A, Schmidt T, Coalter V, Chertova E, Smedley J, Haase AT, Lifson JD, Schacker TW (2015) Antifibrotic therapy in simian immunodeficiency virus infection preserves CD4+ T-cell populations and improves immune reconstitution with antiretroviral therapy. J Infect Dis 211(5):744–754. doi:10.1093/infdis/jiu519

    Article  CAS  PubMed  Google Scholar 

  • Fairfax KA, Kallies A, Nutt SL, Tarlinton DM (2008) Plasma cell development: from B-cell subsets to long-term survival niches. Semin Immunol 20(1):49–58. doi:10.1016/j.smim.2007.12.002

    Article  CAS  PubMed  Google Scholar 

  • Fan L, Iseki S (1999) Immunohistochemical localization of vascular endothelial growth factor in the globule leukocyte/mucosal mast cell of the rat respiratory and digestive tracts. Histochem Cell Biol 111:13–21

    Article  CAS  PubMed  Google Scholar 

  • Fang TC, Yashiro-Ohtani Y, Del Bianco C, Knoblock DM, Blacklow SC, Pear WS (2007) Notch directly regulates Gata3 expression during T helper 2 cell differentiation. Immunity 27(1):100–110. doi:10.1016/j.immuni.2007.04.018

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Fanger NA, Liu C, Guyre PM, Wardwell K, O’Neil J, Guo TL, Christian TP, Mudzinski SP, Gosselin EJ (1997) Activation of human T cells by major histocompatability complex class II expressing neutrophils: proliferation in the presence of superantigen, but not tetanus toxoid. Blood 89(11):4128–4135

    CAS  PubMed  Google Scholar 

  • Felsenfeld G, Groudine M (2003) Controlling the double helix. Nature 421(6921):448–453. doi:10.1038/nature01411

    Article  PubMed  CAS  Google Scholar 

  • Fey G, Hocke G, Wilson D, Ripperger J, Juan T, Cui M-Z, Darlington G (1994) Cytokines and the acute phase response of the liver. In: Arias I, Boyer J, Fausto N, Jacoby W, Schachter D, Shafritz D (eds) The Liver: Biology and Pathobiology, 3rd edn. Raven Press Ltd, New York, pp 113–143

    Google Scholar 

  • Figdor CG, van Kooyk Y, Adema GJ (2002) C-type lectin receptors on dendritic cells and Langerhans cells. Nat Rev Immunol 2(2):77–84. doi:10.1038/nri723

    Article  CAS  PubMed  Google Scholar 

  • Finisguerra V, Di Conza G, Di Matteo M, Serneels J, Costa S, Thompson AA, Wauters E, Walmsley S, Prenen H, Granot Z, Casazza A, Mazzone M (2015) MET is required for the recruitment of anti-tumoural neutrophils. Nature 522(7556):349–353. doi:10.1038/nature14407

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Fletcher MT, Baxter AG (2009) Clinical application of NKT cell biology in type I (autoimmune) diabetes mellitus. Immunol Cell Biol 87(4):315–323. doi:10.1038/icb.2009.5

    Article  CAS  PubMed  Google Scholar 

  • Fletcher AL, Malhotra D, Acton SE, Lukacs-Kornek V, Bellemare-Pelletier A, Curry M, Armant M, Turley SJ (2011) Reproducible isolation of lymph node stromal cells reveals site-dependent differences in fibroblastic reticular cells. Front Immunol 2:35. doi:10.3389/fimmu.2011.00035

    Article  PubMed  PubMed Central  Google Scholar 

  • Fletcher AL, Elman JS, Astarita J, Murray R, Saeidi N, D’Rozario J, Knoblich K, Brown FD, Schildberg FA, Nieves JM, Heng TS, Boyd RL, Turley SJ, Parekkadan B (2014) Lymph node fibroblastic reticular cell transplants show robust therapeutic efficacy in high-mortality murine sepsis. Sci Transl Med 6(249):249ra109. doi:10.1126/scitranslmed.3009377

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Fletcher AL, Acton SE, Knoblich K (2015) Lymph node fibroblastic reticular cells in health and disease. Nat Rev Immunol 15(6):350–361. doi:10.1038/nri3846

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Forster R, Mattis AE, Kremmer E, Wolf E, Brem G, Lipp M (1996) A putative chemokine receptor, BLR1, directs B cell migration to defined lymphoid organs and specific anatomic compartments of the spleen. Cell 87(6):1037–1047

    Article  CAS  PubMed  Google Scholar 

  • Foss DL, Donskoy E, Goldschneider I (2001) The importation of hematogenous precursors by the thymus is a gated phenomenon in normal adult mice. J Exp Med 193(3):365–374

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Foss DL, Donskoy E, Goldschneider I (2002) Functional demonstration of intrathymic binding sites and microvascular gates for prothymocytes in irradiated mice. Int Immunol 14(3):331–338

    Article  CAS  PubMed  Google Scholar 

  • Fridlender ZG, Sun J, Kim S, Kapoor V, Cheng G, Ling L, Worthen GS, Albelda SM (2009) Polarization of tumor-associated neutrophil phenotype by TGF-beta: “N1” versus “N2” TAN. Cancer Cell 16(3):183–194. doi:10.1016/j.ccr.2009.06.017

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Friedenstein AJ, Chailakhyan RK, Latsinik NV, Panasyuk AF, Keiliss-Borok IV (1974) Stromal cells responsible for transferring the microenvironment of the hemopoietic tissues. Cloning in vitro and retransplantation in vivo. Transplantation 17(4):331–340

    Article  CAS  PubMed  Google Scholar 

  • Fuchs TA, Abed U, Goosmann C, Hurwitz R, Schulze I, Wahn V, Weinrauch Y, Brinkmann V, Zychlinsky A (2007) Novel cell death program leads to neutrophil extracellular traps. J Cell Biol 176(2):231–241. doi:10.1083/jcb.200606027

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Gabay C, Krenn V, Bosshard C, Seemayer CA, Chizzolini C, Huard B (2009) Synovial tissues concentrate secreted APRIL. Arthritis Res Ther 11(5):R144. doi:10.1186/ar2817

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Gaboriau-Routhiau V, Rakotobe S, Lecuyer E, Mulder I, Lan A, Bridonneau C, Rochet V, Pisi A, De Paepe M, Brandi G, Eberl G, Snel J, Kelly D, Cerf-Bensussan N (2009) The key role of segmented filamentous bacteria in the coordinated maturation of gut helper T cell responses. Immunity 31(4):677–689. doi:10.1016/j.immuni.2009.08.020

    Article  CAS  PubMed  Google Scholar 

  • Galli SJ, Tsai M (2010) Mast cells in allergy and infection: versatile effector and regulatory cells in innate and adaptive immunity. Eur J Immunol 40(7):1843–1851. doi:10.1002/eji.201040559

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Galli SJ, Tsai M, Piliponsky AM (2008) The development of allergic inflammation. Nature 454(7203):445–454. doi:10.1038/nature07204

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Galli SJ, Starkl P, Marichal T, Tsai M (2016) Mast cells and IgE in defense against venoms: possible “good side” of allergy? Allergol Int 65(1):3–15. doi:10.1016/j.alit.2015.09.002

    Article  CAS  PubMed  Google Scholar 

  • Ganguly D, Haak S, Sisirak V, Reizis B (2013) The role of dendritic cells in autoimmunity. Nat Rev Immunol 13(8):566–577. doi:10.1038/nri3477

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ganz T (2012) Macrophages and systemic iron homeostasis. J Innate Immun 4(5–6):446–453. doi:10.1159/000336423

    Article  CAS  PubMed  Google Scholar 

  • Garber M, Yosef N, Goren A, Raychowdhury R, Thielke A, Guttman M, Robinson J, Minie B, Chevrier N, Itzhaki Z, Blecher-Gonen R, Bornstein C, Amann-Zalcenstein D, Weiner A, Friedrich D, Meldrim J, Ram O, Cheng C, Gnirke A, Fisher S, Friedman N, Wong B, Bernstein BE, Nusbaum C, Hacohen N, Regev A, Amit I (2012) A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals. Mol Cell 47(5):810–822. doi:10.1016/j.molcel.2012.07.030

    Article  CAS  PubMed  Google Scholar 

  • Gardner JM, Devoss JJ, Friedman RS, Wong DJ, Tan YX, Zhou X, Johannes KP, Su MA, Chang HY, Krummel MF, Anderson MS (2008) Deletional tolerance mediated by extrathymic aire-expressing cells. Science 321(5890):843–847. doi:10.1126/science.1159407

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Garin A, Meyer-Hermann M, Contie M, Figge MT, Buatois V, Gunzer M, Toellner KM, Elson G, Kosco-Vilbois MH (2010) Toll-like receptor 4 signaling by follicular dendritic cells is pivotal for germinal center onset and affinity maturation. Immunity 33(1):84–95. doi:10.1016/j.immuni.2010.07.005

    Article  CAS  PubMed  Google Scholar 

  • Gauthier MC, Racine C, Ferland C, Flamand N, Chakir J, Tremblay GM, Laviolette M (2003) Expression of membrane type-4 matrix metalloproteinase (metalloproteinase-17) by human eosinophils. Int J Biochem Cell Biol 35(12):1667–1673

    Article  CAS  PubMed  Google Scholar 

  • Ge Y, Jippo T, Lee YM, Adachi S, Kitamura Y (2001) Independent influence of strain difference and mi transcription factor on the expression of mouse mast cell chymases. Am J Pathol 158(1):281–292. doi:10.1016/S0002-9440(10)63967-3

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Geijtenbeek TB, Torensma R, van Vliet SJ, van Duijnhoven GC, Adema GJ, van Kooyk Y, Figdor CG (2000) Identification of DC-SIGN, a novel dendritic cell-specific ICAM-3 receptor that supports primary immune responses. Cell 100(5):575–585

    Article  CAS  PubMed  Google Scholar 

  • Geijtenbeek TB, Van Vliet SJ, Koppel EA, Sanchez-Hernandez M, Vandenbroucke-Grauls CM, Appelmelk B, Van Kooyk Y (2003) Mycobacteria target DC-SIGN to suppress dendritic cell function. J Exp Med 197(1):7–17

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Gerbe F, van Es JH, Makrini L, Brulin B, Mellitzer G, Robine S, Romagnolo B, Shroyer NF, Bourgaux JF, Pignodel C, Clevers H, Jay P (2011) Distinct ATOH1 and Neurog3 requirements define tuft cells as a new secretory cell type in the intestinal epithelium. J Cell Biol 192(5):767–780. doi:10.1083/jcb.201010127

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Giacomin PR, Siracusa MC, Walsh KP, Grencis RK, Kubo M, Comeau MR, Artis D (2012) Thymic stromal lymphopoietin-dependent basophils promote Th2 cytokine responses following intestinal helminth infection. J Immunol 189(9):4371–4378. doi:10.4049/jimmunol.1200691

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Gibson S, Mackeller A, Newlands GF, Miller HR (1987) Phenotypic expression of mast cell granule proteinases. Distribution of mast cell proteinases I and II in the rat digestive system. Immunology 62(4):621–627

    CAS  PubMed  PubMed Central  Google Scholar 

  • Giffen PS, Turton J, Andrews CM, Barrett P, Clarke CJ, Fung KW, Munday MR, Roman IF, Smyth R, Walshe K, York MJ (2003) Markers of experimental acute inflammation in the Wistar Han rat with particular reference to haptoglobin and C-reactive protein. Arch Toxicol 77(7):392–402

    Article  CAS  PubMed  Google Scholar 

  • Gilliet M, Cao W, Liu YJ (2008) Plasmacytoid dendritic cells: sensing nucleic acids in viral infection and autoimmune diseases. Nat Rev Immunol 8(8):594–606. doi:10.1038/nri2358

    Article  CAS  PubMed  Google Scholar 

  • Ginhoux F, Liu K, Helft J, Bogunovic M, Greter M, Hashimoto D, Price J, Yin N, Bromberg J, Lira SA, Stanley ER, Nussenzweig M, Merad M (2009) The origin and development of nonlymphoid tissue CD103+ DCs. J Exp Med 206(13):3115–3130. doi:10.1084/jem.20091756

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ginhoux F, Greter M, Leboeuf M, Nandi S, See P, Gokhan S, Mehler MF, Conway SJ, Ng LG, Stanley ER, Samokhvalov IM, Merad M (2010) Fate mapping analysis reveals that adult microglia derive from primitive macrophages. Science 330(6005):841–845. doi:10.1126/science.1194637

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Girard JP, Springer TA (1995) High endothelial venules (HEVs): specialized endothelium for lymphocyte migration. Immunol Today 16(9):449–457

    Article  CAS  PubMed  Google Scholar 

  • Girard JP, Moussion C, Forster R (2012) HEVs, lymphatics and homeostatic immune cell trafficking in lymph nodes. Nat Rev Immunol 12(11):762–773. doi:10.1038/nri3298

    Article  CAS  PubMed  Google Scholar 

  • Godfrey DI, Zlotnik A, Suda T (1992) Phenotypic and functional characterization of c-kit expression during intrathymic T cell development. J Immunol 149(7):2281–2285

    CAS  PubMed  Google Scholar 

  • Godfrey DI, MacDonald HR, Kronenberg M, Smyth MJ, Van Kaer L (2004) NKT cells: what’s in a name? Nat Rev Immunol 4(3):231–237. doi:10.1038/nri1309

    Article  CAS  PubMed  Google Scholar 

  • Godfrey DI, Stankovic S, Baxter AG (2010) Raising the NKT cell family. Nat Immunol 11(3):197–206. doi:10.1038/ni.1841

    Article  CAS  PubMed  Google Scholar 

  • Goldrath AW, Bevan MJ (1999) Selecting and maintaining a diverse T-cell repertoire. Nature 402:255–262

    Article  CAS  PubMed  Google Scholar 

  • Gomez MR, Talke Y, Hofmann C, Ketelsen I, Hermann F, Reich B, Goebel N, Schmidbauer K, Dunger N, Bruhl H, Renner K, Syed SN, Mack M (2014) Basophils control T-cell responses and limit disease activity in experimental murine colitis. Mucosal Immunol 7(1):188–199. doi:10.1038/mi.2013.38

    Article  PubMed  CAS  Google Scholar 

  • Gonzalez SF, Lukacs-Kornek V, Kuligowski MP, Pitcher LA, Degn SE, Kim YA, Cloninger MJ, Martinez-Pomares L, Gordon S, Turley SJ, Carroll MC (2010) Capture of influenza by medullary dendritic cells via SIGN-R1 is essential for humoral immunity in draining lymph nodes. Nat Immunol 11(5):427–434. doi:10.1038/ni.1856

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Gordon JL (1986) Extracellular ATP: effects, sources and fate. Biochem J 233(2):309–319

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Gordon S (2013) Macrophages and phagocytosis. In: Paul WE (ed) Fundamental immunology. Wolters Kluwer/Lippincott Williams & Wilkins, Philadelphia, pp 448–467

    Google Scholar 

  • Goto E, Honjo S, Yamashita H, Shomori K, Adachi H, Ito H (2002) Mast cells in human allografted kidney: correlation with interstitial fibrosis. Clin Transplant 16(Suppl 8):7–11

    Article  PubMed  Google Scholar 

  • Gounaris E, Blatner NR, Dennis K, Magnusson F, Gurish MF, Strom TB, Beckhove P, Gounari F, Khazaie K (2009) T-regulatory cells shift from a protective anti-inflammatory to a cancer-promoting proinflammatory phenotype in polyposis. Cancer Res 69(13):5490–5497. doi:10.1158/0008-5472.CAN-09-0304

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Gowans JL (1959) The recirculation of lymphocytes from blood to lymph in the rat. J Physiol 146(1):54–69

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Granot Z, Henke E, Comen EA, King TA, Norton L, Benezra R (2011) Tumor entrained neutrophils inhibit seeding in the premetastatic lung. Cancer Cell 20(3):300–314. doi:10.1016/j.ccr.2011.08.012

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Gray DHD (2005) Controlling the thymic microenvironment. Curr Opin Immunol 17:137–143

    Article  CAS  PubMed  Google Scholar 

  • Gretz JE, Kaldjian EP, Anderson AO, Shaw S (1996) Sophisticated strategies for information encounter in the lymph node: the reticular network as a conduit of soluble information and a highway for cell traffic. J Immunol 157(2):495–499

    CAS  PubMed  Google Scholar 

  • Gretz JE, Norbury CC, Anderson AO, Proudfoot AE, Shaw S (2000) Lymph-borne chemokines and other low molecular weight molecules reach high endothelial venules via specialized conduits while a functional barrier limits access to the lymphocyte microenvironments in lymph node cortex. J Exp Med 192(10):1425–1440

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Grigorova IL, Schwab SR, Phan TG, Pham TH, Okada T, Cyster JG (2009) Cortical sinus probing, S1P1-dependent entry and flow-based capture of egressing T cells. Nat Immunol 10(1):58–65. doi:10.1038/ni.1682

    Article  CAS  PubMed  Google Scholar 

  • Grigorova IL, Panteleev M, Cyster JG (2010) Lymph node cortical sinus organization and relationship to lymphocyte egress dynamics and antigen exposure. Proc Natl Acad Sci U S A 107(47):20447–20452. doi:10.1073/pnas.1009968107

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Grundstrom J, Reimer JM, Magnusson SE, Nilsson G, Wernersson S, Hellman L (2012) Human cord blood derived immature basophils show dual characteristics, expressing both basophil and eosinophil associated proteins. PLoS One 7(10):e48308. doi:10.1371/journal.pone.0048308

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Guarner F, Malagelada JR (2003) Gut flora in health and disease. Lancet 361(9356):512–519. doi:10.1016/S0140-6736(03)12489-0

    Article  PubMed  Google Scholar 

  • Guimaraes-Costa AB, Nascimento MT, Froment GS, Soares RP, Morgado FN, Conceicao-Silva F, Saraiva EM (2009) Leishmania amazonensis promastigotes induce and are killed by neutrophil extracellular traps. Proc Natl Acad Sci U S A 106(16):6748–6753. doi:10.1073/pnas.0900226106

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Gunn MD, Ngo VN, Ansel KM, Ekland EH, Cyster JG, Williams LT (1998a) A B-cell-homing chemokine made in lymphoid follicles activates Burkitt’s lymphoma receptor-1. Nature 391(6669):799–803. doi:10.1038/35876

    Article  CAS  PubMed  Google Scholar 

  • Gunn MD, Tangemann K, Tam C, Cyster JG, Rosen SD, Williams LT (1998b) A chemokine expressed in lymphoid high endothelial venules promotes the adhesion and chemotaxis of naive T lymphocytes. Proc Natl Acad Sci U S A 95(1):258–263

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Guo X, Booth CJ, Paley MA, Wang X, DePonte K, Fikrig E, Narasimhan S, Montgomery RR (2009) Inhibition of neutrophil function by two tick salivary proteins. Infect immun 77(6):2320–2329. doi:10.1128/IAI.01507-08

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Gupta M, Mahanty S, Ahmed R, Rollin PE (2001) Monocyte-derived human macrophages and peripheral blood mononuclear cells infected with ebola virus secrete MIP-1alpha and TNF-alpha and inhibit poly-IC-induced IFN-alpha in vitro. Virology 284(1):20–25. doi:10.1006/viro.2001.0836

    Article  CAS  PubMed  Google Scholar 

  • Gurish MF, Austen KF (2012) Developmental origin and functional specialization of mast cell subsets. Immunity 37(1):25–33. doi:10.1016/j.immuni.2012.07.003

    Article  CAS  PubMed  Google Scholar 

  • Gurish MF, Boyce JA (2006) Mast cells: ontogeny, homing, and recruitment of a unique innate effector cell. J Allergy Clin Immunol 117(6):1285–1291. doi:10.1016/j.jaci.2006.04.017

    Article  CAS  PubMed  Google Scholar 

  • Gurish MF, Bryce PJ, Tao H, Kisselgof AB, Thornton EM, Miller HR, Friend DS, Oettgen HC (2004) IgE enhances parasite clearance and regulates mast cell responses in mice infected with Trichinella spiralis. J Immunol 172(2):1139–1145

    Article  CAS  PubMed  Google Scholar 

  • Guy-Grand D, Dy M, Luffau G, Vassalli P (1984) Gut mucosal mast cells. Origin, traffic, and differentiation. J Exp Med 160(1):12–28

    Article  CAS  PubMed  Google Scholar 

  • Hahn S, Giaglis S, Chowdhury CS, Hosli I, Hasler P (2013) Modulation of neutrophil NETosis: interplay between infectious agents and underlying host physiology. Semin Immunopathol 35(4):439–453. doi:10.1007/s00281-013-0380-x

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Haldar M, Kohyama M, So AY, Kc W, Wu X, Briseno CG, Satpathy AT, Kretzer NM, Arase H, Rajasekaran NS, Wang L, Egawa T, Igarashi K, Baltimore D, Murphy TL, Murphy KM (2014) Heme-mediated SPI-C induction promotes monocyte differentiation into iron-recycling macrophages. Cell 156(6):1223–1234. doi:10.1016/j.cell.2014.01.069

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hall JG, Morris B (1965) The immediate effect of antigens on the cell output of a lymph node. Br J Exp Pathol 46(4):450–454

    CAS  PubMed  PubMed Central  Google Scholar 

  • Hamada S, Umemura M, Shiono T, Tanaka K, Yahagi A, Begum MD, Oshiro K, Okamoto Y, Watanabe H, Kawakami K, Roark C, Born WK, O’Brien R, Ikuta K, Ishikawa H, Nakae S, Iwakura Y, Ohta T, Matsuzaki G (2008) IL-17A produced by gammadelta T cells plays a critical role in innate immunity against Listeria monocytogenes infection in the liver. J Immunol 181(5):3456–3463

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hammerschmidt SI, Ahrendt M, Bode U, Wahl B, Kremmer E, Forster R, Pabst O (2008) Stromal mesenteric lymph node cells are essential for the generation of gut-homing T cells in vivo. J Exp Med 205(11):2483–2490. doi:10.1084/jem.20080039

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hanna RN, Cekic C, Sag D, Tacke R, Thomas GD, Nowyhed H, Herrley E, Rasquinha N, McArdle S, Wu R, Peluso E, Metzger D, Ichinose H, Shaked I, Chodaczek G, Biswas SK, Hedrick CC (2015) Patrolling monocytes control tumor metastasis to the lung. Science. doi:10.1126/science.aac9407

    PubMed Central  Google Scholar 

  • Hao Z, Rajewsky K (2001) Homeostasis of peripheral B cells in the absence of B cell influx from the bone marrow. J Exp Med 194(8):1151–1164

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hapfelmeier S, Lawson MA, Slack E, Kirundi JK, Stoel M, Heikenwalder M, Cahenzli J, Velykoredko Y, Balmer ML, Endt K, Geuking MB, Curtiss R 3rd, McCoy KD, Macpherson AJ (2010) Reversible microbial colonization of germ-free mice reveals the dynamics of IgA immune responses. Science 328(5986):1705–1709. doi:10.1126/science.1188454

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hardy RR (2013) B-lymphocyte development and biology. In: Paul WE (ed) Fundamental immunology. Wolters Kluwer/Lippincott Williams & Wilkins, Philadelphia, pp 215–245

    Google Scholar 

  • Hargreaves DC, Hyman PL, Lu TT, Ngo VN, Bidgol A, Suzuki G, Zou YR, Littman DR, Cyster JG (2001) A coordinated change in chemokine responsiveness guides plasma cell movements. J Exp Med 194(1):45–56

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Haribhai D, Williams JB, Jia S, Nickerson D, Schmitt EG, Edwards B, Ziegelbauer J, Yassai M, Li SH, Relland LM, Wise PM, Chen A, Zheng YQ, Simpson PM, Gorski J, Salzman NH, Hessner MJ, Chatila TA, Williams CB (2011) A requisite role for induced regulatory T cells in tolerance based on expanding antigen receptor diversity. Immunity 35(1):109–122. doi:10.1016/j.immuni.2011.03.029

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hart DN, Fabre JW (1981) Demonstration and characterization of Ia-positive dendritic cells in the interstitial connective tissues of rat heart and other tissues, but not brain. J Exp Med 154(2):347–361

    Article  CAS  PubMed  Google Scholar 

  • Hashimoto D, Chow A, Noizat C, Teo P, Beasley MB, Leboeuf M, Becker CD, See P, Price J, Lucas D, Greter M, Mortha A, Boyer SW, Forsberg EC, Tanaka M, van Rooijen N, Garcia-Sastre A, Stanley ER, Ginhoux F, Frenette PS, Merad M (2013) Tissue-resident macrophages self-maintain locally throughout adult life with minimal contribution from circulating monocytes. Immunity 38(4):792–804. doi:10.1016/j.immuni.2013.04.004

    Article  CAS  PubMed  Google Scholar 

  • Hataye J, Moon JJ, Khoruts A, Reilly C, Jenkins MK (2006) Naive and memory CD4+ T cell survival controlled by clonal abundance. Science 312(5770):114–116. doi:10.1126/science.1124228

    Article  CAS  PubMed  Google Scholar 

  • Hauser AE, Debes GF, Arce S, Cassese G, Hamann A, Radbruch A, Manz RA (2002) Chemotactic responsiveness toward ligands for CXCR3 and CXCR4 is regulated on plasma blasts during the time course of a memory immune response. J Immunol 169(3):1277–1282

    Article  CAS  PubMed  Google Scholar 

  • Havran WL, Allison JP (1988) Developmentally ordered appearance of thymocytes expressing different T-cell antigen receptors. Nature 335:443–445

    Article  CAS  PubMed  Google Scholar 

  • Hayakawa K, Hardy RR, Stall AM, Herzenberg LA, Herzenberg LA (1986) Immunoglobulin-bearing B cells reconstitute and maintain the murine Ly-1 B cell lineage. Eur J Immunol 16(10):1313–1316. doi:10.1002/eji.1830161021

    Article  CAS  PubMed  Google Scholar 

  • Hayashi N, Mita E (1999) Involvement of Fas system-mediated apoptosis in pathogenesis of viral hepatitis. J Viral Hepat 6(5):357–365

    Article  CAS  PubMed  Google Scholar 

  • Hedstrom G, Berglund M, Molin D, Fischer M, Nilsson G, Thunberg U, Book M, Sundstrom C, Rosenquist R, Roos G, Erlanson M, Amini RM, Enblad G (2007) Mast cell infiltration is a favourable prognostic factor in diffuse large B-cell lymphoma. Br J Haematol 138(1):68–71. doi:10.1111/j.1365-2141.2007.06612.x

    Article  PubMed  Google Scholar 

  • Heesters BA, Chatterjee P, Kim YA, Gonzalez SF, Kuligowski MP, Kirchhausen T, Carroll MC (2013) Endocytosis and recycling of immune complexes by follicular dendritic cells enhances B cell antigen binding and activation. Immunity 38(6):1164–1175. doi:10.1016/j.immuni.2013.02.023

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Heesters BA, Myers RC, Carroll MC (2014) Follicular dendritic cells: dynamic antigen libraries. Nat Rev Immunol 14(7):495–504. doi:10.1038/nri3689

    Article  CAS  PubMed  Google Scholar 

  • Heinz S, Benner C, Spann N, Bertolino E, Lin YC, Laslo P, Cheng JX, Murre C, Singh H, Glass CK (2010) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol Cell 38(4):576–589. doi:10.1016/j.molcel.2010.05.004

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Helft J, Ginhoux F, Bogunovic M, Merad M (2010) Origin and functional heterogeneity of non-lymphoid tissue dendritic cells in mice. Immunol Rev 234(1):55–75. doi:10.1111/j.0105-2896.2009.00885.x

    Article  CAS  PubMed  Google Scholar 

  • Hellerstein MK, Hoh RA, Hanley MB, Cesar D, Lee D, Neese RA, McCune JM (2003) Subpopulations of long-lived and short-lived T cells in advanced HIV-1 infection. J Clin Invest 112(6):956–966. doi:10.1172/JCI17533

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hermosilla C, Caro TM, Silva LM, Ruiz A, Taubert A (2014) The intriguing host innate immune response: novel anti-parasitic defence by neutrophil extracellular traps. Parasitology 141(11):1489–1498. doi:10.1017/S0031182014000316

    Article  CAS  PubMed  Google Scholar 

  • Hirosue S, Dubrot J (2015) Modes of antigen presentation by lymph node stromal cells and their immunological implications. Front Immunol 6:446. doi:10.3389/fimmu.2015.00446

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Hogan SP, Rosenberg HF, Moqbel R, Phipps S, Foster PS, Lacy P, Kay AB, Rothenberg ME (2008) Eosinophils: biological properties and role in health and disease. Clin Exp Allergy 38(5):709–750. doi:10.1111/j.1365-2222.2008.02958.x

    Article  CAS  PubMed  Google Scholar 

  • Holgate ST, Polosa R (2008) Treatment strategies for allergy and asthma. Nat Rev Immunol 8(3):218–230. doi:10.1038/nri2262

    Article  CAS  PubMed  Google Scholar 

  • Holtzman MJ (2012) Asthma as a chronic disease of the innate and adaptive immune systems responding to viruses and allergens. J Clin Invest 122(8):2741–2748. doi:10.1172/JCI60325

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Hooper LV, Gordon JI (2001) Commensal host-bacterial relationships in the gut. Science 292(5519):1115–1118

    Article  CAS  PubMed  Google Scholar 

  • Hooper LV, Stappenbeck TS, Hong CV, Gordon JI (2003) Angiogenins: a new class of microbicidal proteins involved in innate immunity. Nat Immunol 4(3):269–273. doi:10.1038/ni888

    Article  CAS  PubMed  Google Scholar 

  • Horner S, Ryan D, Robinson S, Callander R, Stamp K, Roberts RA (2013) Target organ toxicities in studies conducted to support first time in man dosing: an analysis across species and therapy areas. Regul Toxicol Pharmacol 65(3):334–343. doi:10.1016/j.yrtph.2013.02.002

    Article  CAS  PubMed  Google Scholar 

  • Hoshino M, Nakamura Y, Hamid QA (2001a) Gene expression of vascular endothelial growth factor and its receptors and angiogenesis in bronchial asthma. J Allergy Clin Immunol 107(6):1034–1038. doi:10.1067/mai.2001.115626

    Article  CAS  PubMed  Google Scholar 

  • Hoshino M, Takahashi M, Aoike N (2001b) Expression of vascular endothelial growth factor, basic fibroblast growth factor, and angiogenin immunoreactivity in asthmatic airways and its relationship to angiogenesis. J Allergy Clin Immunol 107(2):295–301. doi:10.1067/mai.2001.111928

    Article  CAS  PubMed  Google Scholar 

  • Howitt MR, Lavoie S, Michaud M, Blum AM, Tran SV, Weinstock JV, Gallini CA, Redding K, Margolskee RF, Osborne LC, Artis D, Garrett WS (2016) Tuft cells, taste-chemosensory cells, orchestrate parasite type 2 immunity in the gut. Science 351(6279):1329–1333. doi:10.1126/science.aaf1648

    Article  CAS  PubMed  Google Scholar 

  • Huang B, Lei Z, Zhang GM, Li D, Song C, Li B, Liu Y, Yuan Y, Unkeless J, Xiong H, Feng ZH (2008) SCF-mediated mast cell infiltration and activation exacerbate the inflammation and immunosuppression in tumor microenvironment. Blood 112(4):1269–1279. doi:10.1182/blood-2008-03-147033

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Huang D, Chen CY, Ali Z, Shao L, Shen L, Lockman HA, Barnewall RE, Sabourin C, Eestep J, Reichenberg A, Hintz M, Jomaa H, Wang R, Chen ZW (2009) Antigen-specific Vgamma2Vdelta2 T effector cells confer homeostatic protection against pneumonic plaque lesions. Proc Natl Acad Sci U S A 106(18):7553–7558. doi:10.1073/pnas.0811250106

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Huang H, Li Y, Liu B (2016) Transcriptional regulation of mast cell and basophil lineage commitment. Semin Immunopathol. doi:10.1007/s00281-016-0562-4

    PubMed  Google Scholar 

  • Huard B, McKee T, Bosshard C, Durual S, Matthes T, Myit S, Donze O, Frossard C, Chizzolini C, Favre C, Zubler R, Guyot JP, Schneider P, Roosnek E (2008) APRIL secreted by neutrophils binds to heparan sulfate proteoglycans to create plasma cell niches in human mucosa. J Clin Invest 118(8):2887–2895. doi:10.1172/JCI33760

    CAS  PubMed  PubMed Central  Google Scholar 

  • Hukelmann JL, Anderson KE, Sinclair LV, Grzes KM, Murillo AB, Hawkins PT, Stephens LR, Lamond AI, Cantrell DA (2016) The cytotoxic T cell proteome and its shaping by the kinase mTOR. Nat Immunol 17(1):104–112. doi:10.1038/ni.3314

    Article  CAS  PubMed  Google Scholar 

  • Hume DA (2008) Macrophages as APC and the dendritic cell myth. J Immunol 181(9):5829–5835

    Article  CAS  PubMed  Google Scholar 

  • Huntley JF, McGorum B, Newlands GF, Miller HR (1984) Granulated intraepithelial lymphocytes: their relationship to mucosal mast cells and globule leucocytes in the rat. Immunology 53(3):525–535

    CAS  PubMed  PubMed Central  Google Scholar 

  • Iannacone M, Moseman EA, Tonti E, Bosurgi L, Junt T, Henrickson SE, Whelan SP, Guidotti LG, von Andrian UH (2010) Subcapsular sinus macrophages prevent CNS invasion on peripheral infection with a neurotropic virus. Nature 465(7301):1079–1083. doi:10.1038/nature09118

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ikeda Y, Yamashina S (1993) Developmental changes in intestinal globule leukocytes of normal rats. Cell Tissue Res 273(3):447–455

    Article  CAS  PubMed  Google Scholar 

  • Ikuta K (1990) A developmental switch in thymic lymphocyte maturation potential occurs at the level of hematopoietic stem cells. Cell 62:863–874

    Article  CAS  PubMed  Google Scholar 

  • Irani AM, Schwartz LB (1994) Human mast cell heterogeneity. Allergy Proc 15(6):303–308

    Article  CAS  PubMed  Google Scholar 

  • Irani AM, Bradford TR, Kepley CL, Schechter NM, Schwartz LB (1989) Detection of MCT and MCTC types of human mast cells by immunohistochemistry using new monoclonal anti-tryptase and anti-chymase antibodies. J Histochem Cytochem 37(10):1509–1515

    Article  CAS  PubMed  Google Scholar 

  • Irving BA, Alt FW, Killeen N (1998) Thymocyte development in the absence of pre-T cell receptor extracellular immunoglobulin domains. Science 280:905–908

    Article  CAS  PubMed  Google Scholar 

  • Isaaz S, Baetz K, Olsen K, Podack E, Griffiths GM (1995) Serial killing by cytotoxic T lymphocytes: T cell receptor triggers degranulation, re-filling of the lytic granules and secretion of lytic proteins via a non-granule pathway. Eur J Immunol 25(4):1071–1079. doi:10.1002/eji.1830250432

    Article  CAS  PubMed  Google Scholar 

  • Itano AA, McSorley SJ, Reinhardt RL, Ehst BD, Ingulli E, Rudensky AY, Jenkins MK (2003) Distinct dendritic cell populations sequentially present antigen to CD4 T cells and stimulate different aspects of cell-mediated immunity. Immunity 19(1):47–57

    Article  CAS  PubMed  Google Scholar 

  • Ito Y, Satoh T, Takayama K, Miyagishi C, Walls AF, Yokozeki H (2011) Basophil recruitment and activation in inflammatory skin diseases. Allergy 66(8):1107–1113. doi:10.1111/j.1398-9995.2011.02570.x

    Article  CAS  PubMed  Google Scholar 

  • Ivanov II, Atarashi K, Manel N, Brodie EL, Shima T, Karaoz U, Wei D, Goldfarb KC, Santee CA, Lynch SV, Tanoue T, Imaoka A, Itoh K, Takeda K, Umesaki Y, Honda K, Littman DR (2009) Induction of intestinal Th17 cells by segmented filamentous bacteria. Cell 139(3):485–498. doi:10.1016/j.cell.2009.09.033

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Iwasaki H, Mizuno S, Arinobu Y, Ozawa H, Mori Y, Shigematsu H, Takatsu K, Tenen DG, Akashi K (2006) The order of expression of transcription factors directs hierarchical specification of hematopoietic lineages. Genes Dev 20(21):3010–3021. doi:10.1101/gad.1493506

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jaillon S, Peri G, Delneste Y, Fremaux I, Doni A, Moalli F, Garlanda C, Romani L, Gascan H, Bellocchio S, Bozza S, Cassatella MA, Jeannin P, Mantovani A (2007) The humoral pattern recognition receptor PTX3 is stored in neutrophil granules and localizes in extracellular traps. J Exp Med 204(4):793–804. doi:10.1084/jem.20061301

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jakubzick C, Tacke F, Llodra J, van Rooijen N, Randolph GJ (2006) Modulation of dendritic cell trafficking to and from the airways. J Immunol 176(6):3578–3584

    Article  CAS  PubMed  Google Scholar 

  • Jameson J, Havran WL (2007) Skin gammadelta T-cell functions in homeostasis and wound healing. Immunol Rev 215:114–122. doi:10.1111/j.1600-065X.2006.00483.x

    Article  CAS  PubMed  Google Scholar 

  • Janssens AS, Heide R, den Hollander JC, Mulder PG, Tank B, Oranje AP (2005) Mast cell distribution in normal adult skin. J Clin Pathol 58(3):285–289. doi:10.1136/jcp.2004.017210

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jarjour M, Jorquera A, Mondor I, Wienert S, Narang P, Coles MC, Klauschen F, Bajenoff M (2014) Fate mapping reveals origin and dynamics of lymph node follicular dendritic cells. J Exp Med 211(6):1109–1122. doi:10.1084/jem.20132409

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jenkins MK (2013) Peripheral T-lymphocyte responses and function. In: Paul WE (ed) Fundamental immunology. Wolters Kluwer/Lippincott Williams & Wilkins, Philadelphia, pp 355–366

    Google Scholar 

  • Jenkins MK, Chu HH, McLachlan JB, Moon JJ (2010) On the composition of the preimmune repertoire of T cells specific for Peptide-major histocompatibility complex ligands. Annu Rev Immunol 28:275–294. doi:10.1146/annurev-immunol-030409-101253

    Article  CAS  PubMed  Google Scholar 

  • Johansson A, Rudolfsson S, Hammarsten P, Halin S, Pietras K, Jones J, Stattin P, Egevad L, Granfors T, Wikstrom P, Bergh A (2010) Mast cells are novel independent prognostic markers in prostate cancer and represent a target for therapy. Am J Pathol 177(2):1031–1041. doi:10.2353/ajpath.2010.100070

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jung S, Unutmaz D, Wong P, Sano G, De los Santos K, Sparwasser T, S W, Vuthoori S, K K, Zavala F, EG P, DR L, RA L (2002) In vivo depletion of CD11c+ dendritic cells abrogates priming of CD8+ T cells by exogenous cell-associated antigens. Immunity 17(2):211–220

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Jungraithmayr W (2015) The putative role of mast cells in lung transplantation. Am J Transplant 15(3):594–600. doi:10.1111/ajt.13126

    Article  CAS  PubMed  Google Scholar 

  • Junt T, Moseman EA, Iannacone M, Massberg S, Lang PA, Boes M, Fink K, Henrickson SE, Shayakhmetov DM, Di Paolo NC, van Rooijen N, Mempel TR, Whelan SP, von Andrian UH (2007) Subcapsular sinus macrophages in lymph nodes clear lymph-borne viruses and present them to antiviral B cells. Nature 450(7166):110–114. doi:10.1038/nature06287

    Article  CAS  PubMed  Google Scholar 

  • Kaji T, Ishige A, Hikida M, Taka J, Hijikata A, Kubo M, Nagashima T, Takahashi Y, Kurosaki T, Okada M, Ohara O, Rajewsky K, Takemori T (2012) Distinct cellular pathways select germline-encoded and somatically mutated antibodies into immunological memory. J Exp Med 209(11):2079–2097. doi:10.1084/jem.20120127

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kambe N, Kambe M, Kochan JP, Schwartz LB (2001) Human skin-derived mast cells can proliferate while retaining their characteristic functional and protease phenotypes. Blood 97(7):2045–2052

    Article  CAS  PubMed  Google Scholar 

  • Kanamori Y, Ishimaru K, Nanno M, Maki K, Ikuta K, Nariuchi H, Ishikawa H (1996) Identification of novel lymphoid tissues in murine intestinal mucosa where clusters of c-kit+ IL-7R+ Thy1+ lympho-hemopoietic progenitors develop. J Exp Med 184(4):1449–1459

    Article  CAS  PubMed  Google Scholar 

  • Kankkunen JP, Harvima IT, Naukkarinen A (1997) Quantitative analysis of tryptase and chymase containing mast cells in benign and malignant breast lesions. Int J Cancer 72(3):385–388

    Article  CAS  PubMed  Google Scholar 

  • Karasuyama H, Yamanishi Y (2014) Basophils have emerged as a key player in immunity. Curr Opin Immunol 31:1–7. doi:10.1016/j.coi.2014.07.004

    Article  CAS  PubMed  Google Scholar 

  • Karasuyama H, Mukai K, Obata K, Tsujimura Y, Wada T (2011a) Nonredundant roles of basophils in immunity. Annu Rev Immunol 29:45–69. doi:10.1146/annurev-immunol-031210-101257

    Article  CAS  PubMed  Google Scholar 

  • Karasuyama H, Obata K, Wada T, Tsujimura Y, Mukai K (2011b) Newly appreciated roles for basophils in allergy and protective immunity. Allergy 66(9):1133–1141. doi:10.1111/j.1398-9995.2011.02613.x

    Article  CAS  PubMed  Google Scholar 

  • Katakai T, Hara T, Lee JH, Gonda H, Sugai M, Shimizu A (2004a) A novel reticular stromal structure in lymph node cortex: an immuno-platform for interactions among dendritic cells, T cells and B cells. Int Immunol 16(8):1133–1142. doi:10.1093/intimm/dxh113

    Article  CAS  PubMed  Google Scholar 

  • Katakai T, Hara T, Sugai M, Gonda H, Shimizu A (2004b) Lymph node fibroblastic reticular cells construct the stromal reticulum via contact with lymphocytes. J Exp Med 200(6):783–795. doi:10.1084/jem.20040254

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Katakai T, Suto H, Sugai M, Gonda H, Togawa A, Suematsu S, Ebisuno Y, Katagiri K, Kinashi T, Shimizu A (2008) Organizer-like reticular stromal cell layer common to adult secondary lymphoid organs. J Immunol 181(9):6189–6200

    Article  CAS  PubMed  Google Scholar 

  • Kawai T, Akira S (2011) Toll-like receptors and their crosstalk with other innate receptors in infection and immunity. Immunity 34(5):637–650. doi:10.1016/j.immuni.2011.05.006

    Article  CAS  PubMed  Google Scholar 

  • Keerthivasan S, Suleiman R, Lawlor R, Roderick J, Bates T, Minter L, Anguita J, Juncadella I, Nickoloff BJ, Le Poole IC, Miele L, Osborne BA (2011) Notch signaling regulates mouse and human Th17 differentiation. J Immunol 187(2):692–701. doi:10.4049/jimmunol.1003658

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kelly RH, Balfour BM, Armstrong JA, Griffiths S (1978) Functional anatomy of lymph nodes . II Peripheral lymph-borne mononuclear cells. The Anatomical Record 190(1):5–21. doi:10.1002/ar.1091900103

    Article  CAS  PubMed  Google Scholar 

  • Kelsoe G (1996) Life and death in germinal centers (redux). Immunity 4(2):107–111

    Article  CAS  PubMed  Google Scholar 

  • Khatua B, Bhattacharya K, Mandal C (2012) Sialoglycoproteins adsorbed by Pseudomonas aeruginosa facilitate their survival by impeding neutrophil extracellular trap through siglec-9. J Leukoc Biol 91(4):641–655. doi:10.1189/jlb.0511260

    Article  CAS  PubMed  Google Scholar 

  • Khazaie K, Blatner NR, Khan MW, Gounari F, Gounaris E, Dennis K, Bonertz A, Tsai FN, Strouch MJ, Cheon E, Phillips JD, Beckhove P, Bentrem DJ (2011) The significant role of mast cells in cancer. Cancer Metastasis Rev 30(1):45–60. doi:10.1007/s10555-011-9286-z

    Article  CAS  PubMed  Google Scholar 

  • Kiel MJ, Yilmaz OH, Iwashita T, Yilmaz OH, Terhorst C, Morrison SJ (2005) SLAM family receptors distinguish hematopoietic stem and progenitor cells and reveal endothelial niches for stem cells. Cell 121(7):1109–1121. doi:10.1016/j.cell.2005.05.026

    Article  CAS  PubMed  Google Scholar 

  • Kierdorf K, Erny D, Goldmann T, Sander V, Schulz C, Perdiguero EG, Wieghofer P, Heinrich A, Riemke P, Holscher C, Muller DN, Luckow B, Brocker T, Debowski K, Fritz G, Opdenakker G, Diefenbach A, Biber K, Heikenwalder M, Geissmann F, Rosenbauer F, Prinz M (2013) Microglia emerge from erythromyeloid precursors via Pu.1- and Irf8-dependent pathways. Nat Neurosci 16(3):273–280. doi:10.1038/nn.3318

    Article  CAS  PubMed  Google Scholar 

  • Kiermaier E, Sixt M (2015) IMMUNOLOGY. Fragmented communication between immune cells. Science 349(6252):1055–1056. doi:10.1126/science.aad0867

    Article  CAS  PubMed  Google Scholar 

  • Kim HY, DeKruyff RH, Umetsu DT (2010) The many paths to asthma: phenotype shaped by innate and adaptive immunity. Nat Immunol 11(7):577–584. doi:10.1038/ni.1892

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Kjer-Nielsen L, Patel O, Corbett AJ, Le Nours J, Meehan B, Liu L, Bhati M, Chen Z, Kostenko L, Reantragoon R, Williamson NA, Purcell AW, Dudek NL, McConville MJ, O’Hair RA, Khairallah GN, Godfrey DI, Fairlie DP, Rossjohn J, McCluskey J (2012) MR1 presents microbial vitamin B metabolites to MAIT cells. Nature 491(7426):717–723. doi:10.1038/nature11605

    CAS  PubMed  Google Scholar 

  • Klein U, Kuppers R, Rajewsky K (1997) Evidence for a large compartment of IgM-expressing memory B cells in humans. Blood 89(4):1288–1298

    CAS  PubMed  Google Scholar 

  • Klug DB (1998) Interdependence of cortical thymic epithelial cell differentiation and T-lineage commitment. Proc Natl Acad Sci U S A 95:11822–11827

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Knight SC, Balfour BM, O’Brien J, Buttifant L, Sumerska T, Clarke J (1982) Role of veiled cells in lymphocyte activation. Eur J Immunol 12(12):1057–1060. doi:10.1002/eji.1830121214

    Article  CAS  PubMed  Google Scholar 

  • Knight PA, Wright SH, Lawrence CE, Paterson YY, Miller HR (2000) Delayed expulsion of the nematode Trichinella spiralis in mice lacking the mucosal mast cell-specific granule chymase, mouse mast cell protease-1. J Exp Med 192(12):1849–1856

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Knook DL, Sleyster EC (1980) Isolated parenchymal, Kupffer and endothelial rat liver cells characterized by their lysosomal enzyme content. Biochem Biophys Res Commun 96(1):250–257

    Article  CAS  PubMed  Google Scholar 

  • Kobayasi T, Asboe-Hansen G (1969) Degranulation and regranulation of human mast cells. An electron microscopic study of the whealing reaction in urticaria pigmentosa. Acta Derm Venereol 49(4):369–381

    CAS  PubMed  Google Scholar 

  • Kometani K, Nakagawa R, Shinnakasu R, Kaji T, Rybouchkin A, Moriyama S, Furukawa K, Koseki H, Takemori T, Kurosaki T (2013) Repression of the transcription factor Bach2 contributes to predisposition of IgG1 memory B cells toward plasma cell differentiation. Immunity 39(1):136–147. doi:10.1016/j.immuni.2013.06.011

    Article  CAS  PubMed  Google Scholar 

  • Kopp HG, Hooper AT, Avecilla ST, Rafii S (2009) Functional heterogeneity of the bone marrow vascular niche. Ann N Y Acad Sci 1176:47–54. doi:10.1111/j.1749-6632.2009.04964.x

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Korngold R, Jameson BA, McDonnell JM, Leighton C, Sutton BJ, Gould HJ, Murphy GF (1997) Peptide analogs that inhibit IgE-Fc epsilon RI alpha interactions ameliorate the development of lethal graft-versus-host disease. Biol Blood Marrow Transplant 3(4):187–193

    CAS  PubMed  Google Scholar 

  • Kouzarides T (2007) Chromatin modifications and their function. Cell 128(4):693–705. doi:10.1016/j.cell.2007.02.005

    Article  CAS  PubMed  Google Scholar 

  • Krautler NJ, Kana V, Kranich J, Tian Y, Perera D, Lemm D, Schwarz P, Armulik A, Browning JL, Tallquist M, Buch T, Oliveira-Martins JB, Zhu C, Hermann M, Wagner U, Brink R, Heikenwalder M, Aguzzi A (2012) Follicular dendritic cells emerge from ubiquitous perivascular precursors. Cell 150(1):194–206. doi:10.1016/j.cell.2012.05.032

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Krause PJ, Grant-Kels JM, Tahan SR, Dardick KR, Alarcon-Chaidez F, Bouchard K, Visini C, Deriso C, Foppa IM, Wikel S (2009) Dermatologic changes induced by repeated Ixodes scapularis bites and implications for prevention of tick-borne infection. Vector Borne Zoonotic Dis 9(6):603–610. doi:10.1089/vbz.2008.0091

    Article  PubMed  PubMed Central  Google Scholar 

  • Kretschmer K, Apostolou I, Hawiger D, Khazaie K, Nussenzweig MC, von Boehmer H (2005) Inducing and expanding regulatory T cell populations by foreign antigen. Nat Immunol 6(12):1219–1227. doi:10.1038/ni1265

    Article  CAS  PubMed  Google Scholar 

  • Kriebel PW, Barr VA, Parent CA (2003) Adenylyl cyclase localization regulates streaming during chemotaxis. Cell 112(4):549–560

    Article  CAS  PubMed  Google Scholar 

  • Krug A, Uppaluri R, Facchetti F, Dorner BG, Sheehan KC, Schreiber RD, Cella M, Colonna M (2002) IFN-producing cells respond to CXCR3 ligands in the presence of CXCL12 and secrete inflammatory chemokines upon activation. J Immunol 169(11):6079–6083

    Article  CAS  PubMed  Google Scholar 

  • Kuiper J, Brouwer A, Knook D, van Berkel T (1994) Kupffer and sinusoidal endothelial cells. In: Arias I, Boyer J, Fausto N, Jakoby W, Schachter D, Shafritz D (eds) The liver: biology and pathobiology. Raven Press, Ltd., New York, pp 789–818

    Google Scholar 

  • Kumamoto Y, Linehan M, Weinstein JS, Laidlaw BJ, Craft JE, Iwasaki A (2013) CD301b(+) dermal dendritic cells drive T helper 2 cell-mediated immunity. Immunity 39(4):733–743. doi:10.1016/j.immuni.2013.08.029

    Article  CAS  PubMed  Google Scholar 

  • Kumar V, Chyou S, Stein JV, Lu TT (2012) Optical projection tomography reveals dynamics of HEV growth after immunization with protein plus CFA and features shared with HEVs in acute autoinflammatory lymphadenopathy. Front Immunol 3:282. doi:10.3389/fimmu.2012.00282

    PubMed  PubMed Central  Google Scholar 

  • Kuroda N (2005) Development of autoimmunity against transcriptionally unrepressed target antigen in the thymus of Aire-deficient mice. J Immunol 174:1862–1870

    Article  CAS  PubMed  Google Scholar 

  • Kuroda K, Han H, Tani S, Tanigaki K, Tun T, Furukawa T, Taniguchi Y, Kurooka H, Hamada Y, Toyokuni S, Honjo T (2003) Regulation of marginal zone B cell development by MINT, a suppressor of Notch/RBP-J signaling pathway. Immunity 18(2):301–312

    Article  CAS  PubMed  Google Scholar 

  • Kusmartsev S, Gabrilovich DI (2002) Immature myeloid cells and cancer-associated immune suppression. Cancer Immunol Immunother 51(6):293–298. doi:10.1007/s00262-002-0280-8

    Article  CAS  PubMed  Google Scholar 

  • Kyewski B, Derbinski J (2004) Self-representation in the thymus: an extended view. Nat Rev Immunol 4:688–698

    Article  CAS  PubMed  Google Scholar 

  • Lacy P, Moqbel R (1997) Eokines: synthesis, storage and release from human eosinophils. Mem Inst Oswaldo Cruz 92(Suppl 2):125–133

    Article  CAS  PubMed  Google Scholar 

  • Lacy P, Moqbel R (2000) Eosinophil cytokines. Chem Immunol 76:134–155

    Article  CAS  PubMed  Google Scholar 

  • Lantz CS, Min B, Tsai M, Chatterjea D, Dranoff G, Galli SJ (2008) IL-3 is required for increases in blood basophils in nematode infection in mice and can enhance IgE-dependent IL-4 production by basophils in vitro. Lab Invest 88(11):1134–1142. doi:10.1038/labinvest.2008.88

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lawson V (2012) Turned on by danger: activation of CD1d-restricted invariant natural killer T cells. Immunology 137(1):20–27. doi:10.1111/j.1365-2567.2012.03612.x

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Le Douarin NM, Jotereau FV (1975) Tracing of cells of the avian thymus through embryonic life in interspecific chimeras. J Exp Med 142:17–40

    Article  CAS  PubMed  Google Scholar 

  • Lee SJ, Evers S, Roeder D, Parlow AF, Risteli J, Risteli L, Lee YC, Feizi T, Langen H, Nussenzweig MC (2002) Mannose receptor-mediated regulation of serum glycoprotein homeostasis. Science 295(5561):1898–1901

    Article  CAS  PubMed  Google Scholar 

  • Lehuen A, Diana J, Zaccone P, Cooke A (2010) Immune cell crosstalk in type 1 diabetes. Nat Rev Immunol 10(7):501–513. doi:10.1038/nri2787

    Article  CAS  PubMed  Google Scholar 

  • Ley RE, Turnbaugh PJ, Klein S, Gordon JI (2006) Microbial ecology: human gut microbes associated with obesity. Nature 444(7122):1022–1023. doi:10.1038/4441022a

    Article  CAS  PubMed  Google Scholar 

  • Lim K, Hyun Y-M, Lambert-Emo K, Capece T, Bae S, Miller RA, Topham DJ, Kim M (2015) Neutrophil trails guide influenza-specific CD8+ T cells in the airways. Science 349:1071

    Article  CAS  Google Scholar 

  • Limmer A, Ohl J, Kurts C, Ljunggren HG, Reiss Y, Groettrup M, Momburg F, Arnold B, Knolle PA (2000) Efficient presentation of exogenous antigen by liver endothelial cells to CD8+ T cells results in antigen-specific T-cell tolerance. Nat Med 6(12):1348–1354

    Article  CAS  PubMed  Google Scholar 

  • Lind EF, Prockop SE, Porritt HE, Petrie HT (2001) Mapping precursor movement through the postnatal thymus reveals specific microenvironments supporting defined stages of early lymphoid development. J Exp Med 194(2):127–134

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lindquist RL, Shakhar G, Dudziak D, Wardemann H, Eisenreich T, Dustin ML, Nussenzweig MC (2004) Visualizing dendritic cell networks in vivo. Nat Immunol 5(12):1243–1250. doi:10.1038/ni1139

    Article  CAS  PubMed  Google Scholar 

  • Link A, Vogt TK, Favre S, Britschgi MR, Acha-Orbea H, Hinz B, Cyster JG, Luther SA (2007) Fibroblastic reticular cells in lymph nodes regulate the homeostasis of naive T cells. Nat Immunol 8(11):1255–1265. doi:10.1038/ni1513

    Article  CAS  PubMed  Google Scholar 

  • Liston A, Lesage S, Wilson J, Peltonen L, Goodnow CC (2003) Aire regulates negative selection of organ-specific T cells. Nat Immunol 4:350–354

    Article  CAS  PubMed  Google Scholar 

  • Liu KZ, Nussenzweig MC (2013) Dendritic cells. In: Paul WE (ed) Fundamental immunology. Wolters Kluwer/Lippincott Williams & Wilkins, Philadelphia, pp 381–394

    Google Scholar 

  • Liu YJ, Malisan F, de Bouteiller O, Guret C, Lebecque S, Banchereau J, Mills FC, Max EE, Martinez-Valdez H (1996) Within germinal centers, isotype switching of immunoglobulin genes occurs after the onset of somatic mutation. Immunity 4(3):241–250

    Article  CAS  PubMed  Google Scholar 

  • Liu K, Victora GD, Schwickert TA, Guermonprez P, Meredith MM, Yao K, Chu FF, Randolph GJ, Rudensky AY, Nussenzweig M (2009) In vivo analysis of dendritic cell development and homeostasis. Science 324(5925):392–397. doi:10.1126/science.1170540

    CAS  PubMed  PubMed Central  Google Scholar 

  • Lo CG, Xu Y, Proia RL, Cyster JG (2005) Cyclical modulation of sphingosine-1-phosphate receptor 1 surface expression during lymphocyte recirculation and relationship to lymphoid organ transit. J Exp Med 201(2):291–301. doi:10.1084/jem.20041509

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lochner M, Peduto L, Cherrier M, Sawa S, Langa F, Varona R, Riethmacher D, Si-Tahar M, Di Santo JP, Eberl G (2008) In vivo equilibrium of proinflammatory IL-17+ and regulatory IL-10+ Foxp3+ RORgamma t+ T cells. J Exp Med 205(6):1381–1393. doi:10.1084/jem.20080034

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Logters T, Margraf S, Altrichter J, Cinatl J, Mitzner S, Windolf J, Scholz M (2009) The clinical value of neutrophil extracellular traps. Med Microbiol Immunol 198(4):211–219. doi:10.1007/s00430-009-0121-x

    Article  PubMed  Google Scholar 

  • Loose D, Van de Wiele C (2009) The immune system and cancer. Cancer Biother Radiopharm 24(3):369–376. doi:10.1089/cbr.2008.0593

    Article  CAS  PubMed  Google Scholar 

  • Lotan R, Belloni PN, Tressler RJ, Lotan D, Xu XC, Nicolson GL (1994) Expression of galectins on microvessel endothelial cells and their involvement in tumour cell adhesion. Glycoconj J 11(5):462–468

    Article  CAS  PubMed  Google Scholar 

  • Love PE, Bhandoola A (2011) Signal integration and crosstalk during thymocyte migration and emigration. Nat Rev Immunol 11(7):469–477. doi:10.1038/nri2989

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Lu LF, Lind EF, Gondek DC, Bennett KA, Gleeson MW, Pino-Lagos K, Scott ZA, Coyle AJ, Reed JL, Van Snick J, Strom TB, Zheng XX, Noelle RJ (2006) Mast cells are essential intermediaries in regulatory T-cell tolerance. Nature 442(7106):997–1002. doi:10.1038/nature05010

    Article  CAS  PubMed  Google Scholar 

  • Ludin A, Itkin T, Gur-Cohen S, Mildner A, Shezen E, Golan K, Kollet O, Kalinkovich A, Porat Z, D’Uva G, Schajnovitz A, Voronov E, Brenner DA, Apte RN, Jung S, Lapidot T (2012) Monocytes-macrophages that express alpha-smooth muscle actin preserve primitive hematopoietic cells in the bone marrow. Nat Immunol 13(11):1072–1082. doi:10.1038/ni.2408

    Article  CAS  PubMed  Google Scholar 

  • Lue J, Hsu M, Yang D, Marx P, Chen Z, Cheng-Mayer C (2002) Addition of a single gp120 glycan confers increased binding to dendritic cell-specific ICAM-3-grabbing nonintegrin and neutralization escape to human immunodeficiency virus type 1. J Virol 76(20):10299–10306

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Luo D, Vanderkerken K, Chen MC, Vermijlen D, Asosingh K, Willems E, Triantis V, Eizirik DL, Kuppen PJ, Wisse E (2001) Rat hepatic natural killer cells (pit cells) express mRNA and protein similar to in vitro interleukin-2 activated spleen natural killer cells. Cell Immunol 210(1):41–48

    Article  CAS  PubMed  Google Scholar 

  • Luther SA, Tang HL, Hyman PL, Farr AG, Cyster JG (2000) Coexpression of the chemokines ELC and SLC by T zone stromal cells and deletion of the ELC gene in the plt/plt mouse. Proc Natl Acad Sci U S A 97(23):12694–12699. doi:10.1073/pnas.97.23.12694

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • MacDonald HR (2002) Development and selection of NKT cells. Curr Opin Immunol 14(2):250–254

    Article  CAS  PubMed  Google Scholar 

  • MacDonald G, Shi L, Vande Velde C, Lieberman J, Greenberg AH (1999) Mitochondria-dependent and -independent regulation of Granzyme B-induced apoptosis. J Exp Med 189(1):131–144

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • MacKenzie JR, Mattes J, Dent LA, Foster PS (2001) Eosinophils promote allergic disease of the lung by regulating CD4(+) Th2 lymphocyte function. J Immunol 167(6):3146–3155

    Article  CAS  PubMed  Google Scholar 

  • MacLennan IC, Toellner KM, Cunningham AF, Serre K, Sze DM, Zuniga E, Cook MC, Vinuesa CG (2003) Extrafollicular antibody responses. Immunol Rev 194:8–18

    Article  CAS  PubMed  Google Scholar 

  • MacPhee PJ, Schmidt EE, Groom AC (1995) Intermittence of blood flow in liver sinusoids, studied by high-resolution in vivo microscopy. Am J Physiol 269(5 Pt 1):G692–G698

    CAS  PubMed  Google Scholar 

  • Maekawa Y, Tsukumo S, Chiba S, Hirai H, Hayashi Y, Okada H, Kishihara K, Yasutomo K (2003) Delta1-Notch3 interactions bias the functional differentiation of activated CD4+ T cells. Immunity 19(4):549–559

    Article  CAS  PubMed  Google Scholar 

  • Magnusson S, Berg T (1989) Extremely rapid endocytosis mediated by the mannose receptor of sinusoidal endothelial rat liver cells. Biochem J 257(3):651–656

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Mahnke K, Guo M, Lee S, Sepulveda H, Swain SL, Nussenzweig M, Steinman RM (2000) The dendritic cell receptor for endocytosis, DEC-205, can recycle and enhance antigen presentation via major histocompatibility complex class II-positive lysosomal compartments. J Cell Biol 151(3):673–684

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Malhotra D, AL F, Astarita J, Lukacs-Kornek V, Tayalia P, SF G, KG E, SK C, Knoblich K, ME H, MB B, MC C, DJ M, SJ T, Immunological Genome Project C (2012) Transcriptional profiling of stroma from inflamed and resting lymph nodes defines immunological hallmarks. Nat Immunol 13(5):499–510. doi:10.1038/ni.2262

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Malhotra D, Fletcher AL, Turley SJ (2013) Stromal and hematopoietic cells in secondary lymphoid organs: partners in immunity. Immunol Rev 251(1):160–176. doi:10.1111/imr.12023

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Malissen B, Tamoutounour S, Henri S (2014) The origins and functions of dendritic cells and macrophages in the skin. Nat Rev Immunol 14(6):417–428. doi:10.1038/nri3683

    Article  CAS  PubMed  Google Scholar 

  • Maloy KJ, Salaun L, Cahill R, Dougan G, Saunders NJ, Powrie F (2003) CD4+CD25+ T(R) cells suppress innate immune pathology through cytokine-dependent mechanisms. J Exp Med 197(1):111–119

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Mamani-Matsuda M, Cosma A, Weller S, Faili A, Staib C, Garcon L, Hermine O, Beyne-Rauzy O, Fieschi C, Pers JO, Arakelyan N, Varet B, Sauvanet A, Berger A, Paye F, Andrieu JM, Michel M, Godeau B, Buffet P, Reynaud CA, Weill JC (2008) The human spleen is a major reservoir for long-lived vaccinia virus-specific memory B cells. Blood 111(9):4653–4659. doi:10.1182/blood-2007-11-123844

    Article  CAS  PubMed  Google Scholar 

  • Mantovani A, Cassatella MA, Costantini C, Jaillon S (2011) Neutrophils in the activation and regulation of innate and adaptive immunity. Nat Rev Immunol 11(8):519–531. doi:10.1038/nri3024

    Article  CAS  PubMed  Google Scholar 

  • Manz RA, Lohning M, Cassese G, Thiel A, Radbruch A (1998) Survival of long-lived plasma cells is independent of antigen. Int Immunol 10(11):1703–1711

    Article  CAS  PubMed  Google Scholar 

  • Manz MG, Traver D, Akashi K, Merad M, Miyamoto T, Engleman EG, Weissman IL (2001) Dendritic cell development from common myeloid progenitors. Ann N Y Acad Sci 938:167–173 discussion 173-164

    Article  CAS  PubMed  Google Scholar 

  • Marchesi VT, Gowans JL (1964) The migration of lymphocytes through the endothelium of venules in lymph nodes: an electron microscope study. Proc R Soc Lond B Biol Sci 159:283–290

    Article  CAS  PubMed  Google Scholar 

  • Marshall JS (2004) Mast-cell responses to pathogens. Nat Rev Immunol 4(10):787–799. doi:10.1038/nri1460

    Article  CAS  PubMed  Google Scholar 

  • Martin E, Treiner E, Duban L, Guerri L, Laude H, Toly C, Premel V, Devys A, Moura IC, Tilloy F, Cherif S, Vera G, Latour S, Soudais C, Lantz O (2009) Stepwise development of MAIT cells in mouse and human. PLoS Biol 7(3):e54. doi:10.1371/journal.pbio.1000054

    Article  PubMed  CAS  Google Scholar 

  • Martinet L, Garrido I, Filleron T, Le Guellec S, Bellard E, Fournie JJ, Rochaix P, Girard JP (2011) Human solid tumors contain high endothelial venules: association with T- and B-lymphocyte infiltration and favorable prognosis in breast cancer. Cancer Res 71(17):5678–5687. doi:10.1158/0008-5472.CAN-11-0431

    Article  CAS  PubMed  Google Scholar 

  • Martinez-Gamboa L, Mei H, Loddenkemper C, Ballmer B, Hansen A, Lipsky PE, Emmerich F, Radbruch A, Salama A, Dorner T (2009) Role of the spleen in peripheral memory B-cell homeostasis in patients with autoimmune thrombocytopenia purpura. Clin Immunol 130(2):199–212. doi:10.1016/j.clim.2008.09.009

    Article  CAS  PubMed  Google Scholar 

  • Matloubian M (2004) Lymphocyte egress from thymus and peripheral lymphoid organs is dependent on S1P receptor 1. Nature 427:355–360

    Article  CAS  PubMed  Google Scholar 

  • Matsuba-Kitamura S, Yoshimoto T, Yasuda K, Futatsugi-Yumikura S, Taki Y, Muto T, Ikeda T, Mimura O, Nakanishi K (2010) Contribution of IL-33 to induction and augmentation of experimental allergic conjunctivitis. Int Immunol 22(6):479–489. doi:10.1093/intimm/dxq035

    Article  CAS  PubMed  Google Scholar 

  • Maurer M, Rosen K, Hsieh HJ, Saini S, Grattan C, Gimenez-Arnau A, Agarwal S, Doyle R, Canvin J, Kaplan A, Casale T (2013) Omalizumab for the treatment of chronic idiopathic or spontaneous urticaria. N Engl J Med 368(10):924–935. doi:10.1056/NEJMoa1215372

    Article  CAS  PubMed  Google Scholar 

  • Mazo IB, Honczarenko M, Leung H, Cavanagh LL, Bonasio R, Weninger W, Engelke K, Xia L, McEver RP, Koni PA, Silberstein LE, von Andrian UH (2005) Bone marrow is a major reservoir and site of recruitment for central memory CD8+ T cells. Immunity 22(2):259–270. doi:10.1016/j.immuni.2005.01.008

    Article  CAS  PubMed  Google Scholar 

  • Maxwell SS, Stoklasek TA, Dash Y, Macaluso KR, Wikel SK (2005) Tick modulation of the in-vitro expression of adhesion molecules by skin-derived endothelial cells. Ann Trop Med Parasitol 99(7):661–672. doi:10.1179/136485905X51490

    Article  CAS  PubMed  Google Scholar 

  • McCourt PA, Smedsrod BH, Melkko J, Johansson S (1999) Characterization of a hyaluronan receptor on rat sinusoidal liver endothelial cells and its functional relationship to scavenger receptors. Hepatology 30(5):1276–1286

    Article  CAS  PubMed  Google Scholar 

  • McCracken VJ, Lorenz RG (2001) The gastrointestinal ecosystem: a precarious alliance among epithelium, immunity and microbiota. Cell Microbiol 3(1):1–11

    Article  CAS  PubMed  Google Scholar 

  • McCuskey RS (2000) Morphological mechanisms for regulating blood flow through hepatic sinusoids. Liver 20(1):3–7

    Article  CAS  PubMed  Google Scholar 

  • McDonald B, Pittman K, Menezes GB, Hirota SA, Slaba I, Waterhouse CC, Beck PL, Muruve DA, Kubes P (2010) Intravascular danger signals guide neutrophils to sites of sterile inflammation. Science 330(6002):362–366. doi:10.1126/science.1195491

    Article  CAS  PubMed  Google Scholar 

  • McKenzie GJ, Bancroft A, Grencis RK, McKenzie AN (1998) A distinct role for interleukin-13 in Th2-cell-mediated immune responses. Curr Biol 8(6):339–342

    Article  CAS  PubMed  Google Scholar 

  • McLachlan JB, Shelburne CP, Hart JP, Pizzo SV, Goyal R, Brooking-Dixon R, Staats HF, Abraham SN (2008) Mast cell activators: a new class of highly effective vaccine adjuvants. Nat Med 14(5):536–541. doi:10.1038/nm1757

    Article  CAS  PubMed  Google Scholar 

  • Mebius RE (2003) Organogenesis of lymphoid tissues. Nat Rev Immunol 3(4):292–303. doi:10.1038/nri1054

    Article  CAS  PubMed  Google Scholar 

  • Megiovanni AM, Sanchez F, Robledo-Sarmiento M, Morel C, Gluckman JC, Boudaly S (2006) Polymorphonuclear neutrophils deliver activation signals and antigenic molecules to dendritic cells: a new link between leukocytes upstream of T lymphocytes. J Leukoc Biol 79(5):977–988. doi:10.1189/jlb.0905526

    Article  CAS  PubMed  Google Scholar 

  • Mehal WZ, Juedes AE, Crispe IN (1999) Selective retention of activated CD8+ T cells by the normal liver. J Immunol 163(6):3202–3210

    CAS  PubMed  Google Scholar 

  • Melkko J, Hellevik T, Risteli L, Risteli J, Smedsrod B (1994) Clearance of NH2-terminal propeptides of types I and III procollagen is a physiological function of the scavenger receptor in liver endothelial cells. J Exp Med 179(2):405–412

    Article  CAS  PubMed  Google Scholar 

  • Mellman I, Turley SJ, Steinman RM (1998) Antigen processing for amateurs and professionals. Trends Cell Biol 8(6):231–237

    Article  CAS  PubMed  Google Scholar 

  • Melo RC, Spencer LA, Perez SA, Neves JS, Bafford SP, Morgan ES, Dvorak AM, Weller PF (2009) Vesicle-mediated secretion of human eosinophil granule-derived major basic protein. Lab Invest 89(7):769–781. doi:10.1038/labinvest.2009.40

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Merad M, Manz MG, Karsunky H, Wagers A, Peters W, Charo I, Weissman IL, Cyster JG, Engleman EG (2002) Langerhans cells renew in the skin throughout life under steady-state conditions. Nat Immunol 3(12):1135–1141. doi:10.1038/ni852

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Merad M, Hoffmann P, Ranheim E, Slaymaker S, Manz MG, Lira SA, Charo I, Cook DN, Weissman IL, Strober S, Engleman EG (2004) Depletion of host Langerhans cells before transplantation of donor alloreactive T cells prevents skin graft-versus-host disease. Nat Med 10(5):510–517. doi:10.1038/nm1038

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Metcalf D, Ng AP, Baldwin TM, Di Rago L, Mifsud S (2013) Concordant mast cell and basophil production by individual hematopoietic blast colony-forming cells. Proc Natl Acad Sci U S A 110(22):9031–9035. doi:10.1073/pnas.1307711110

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Metcalfe DD, Baram D, Mekori YA (1997) Mast cells. Physiol Rev 77(4):1033–1079

    CAS  PubMed  Google Scholar 

  • Metz M, Grimbaldeston MA, Nakae S, Piliponsky AM, Tsai M, Galli SJ (2007) Mast cells in the promotion and limitation of chronic inflammation. Immunol Rev 217:304–328. doi:10.1111/j.1600-065X.2007.00520.x

    Article  CAS  PubMed  Google Scholar 

  • Miller JF (1961) Immunological function of the thymus. Lancet 2(7205):748–749

    Article  CAS  PubMed  Google Scholar 

  • Miller HR (1996) Mucosal mast cells and the allergic response against nematode parasites. Vet Immunol Immunopathol 54(1–4):331–336

    Article  CAS  PubMed  Google Scholar 

  • Miller HR, Pemberton AD (2002) Tissue-specific expression of mast cell granule serine proteinases and their role in inflammation in the lung and gut. Immunology 105(4):375–390

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Minter LM, Turley DM, Das P, Shin HM, Joshi I, Lawlor RG, Cho OH, Palaga T, Gottipati S, Telfer JC, Kostura L, Fauq AH, Simpson K, Such KA, Miele L, Golde TE, Miller SD, Osborne BA (2005) Inhibitors of gamma-secretase block in vivo and in vitro T helper type 1 polarization by preventing Notch upregulation of Tbx21. Nat Immunol 6(7):680–688

    Article  CAS  PubMed  Google Scholar 

  • Mionnet C, Sanos SL, Mondor I, Jorquera A, Laugier JP, Germain RN, Bajenoff M (2011) High endothelial venules as traffic control points maintaining lymphocyte population homeostasis in lymph nodes. Blood 118(23):6115–6122. doi:10.1182/blood-2011-07-367409

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Miyake Y, Asano K, Kaise H, Uemura M, Nakayama M, Tanaka M (2007) Critical role of macrophages in the marginal zone in the suppression of immune responses to apoptotic cell-associated antigens. J Clin Invest 117(8):2268–2278. doi:10.1172/JCI31990

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Miyasaka M, Tanaka T (2004) Lymphocyte trafficking across high endothelial venules: dogmas and enigmas. Nat Rev Immunol 4(5):360–370. doi:10.1038/nri1354

    Article  CAS  PubMed  Google Scholar 

  • Molawi K, Wolf Y, Kandalla PK, Favret J, Hagemeyer N, Frenzel K, Pinto AR, Klapproth K, Henri S, Malissen B, Rodewald HR, Rosenthal NA, Bajenoff M, Prinz M, Jung S, Sieweke MH (2014) Progressive replacement of embryo-derived cardiac macrophages with age. J Exp Med 211(11):2151–2158. doi:10.1084/jem.20140639

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Molenaar R, Greuter M, van der Marel AP, Roozendaal R, Martin SF, Edele F, Huehn J, Forster R, O’Toole T, Jansen W, Eestermans IL, Kraal G, Mebius RE (2009) Lymph node stromal cells support dendritic cell-induced gut-homing of T cells. J Immunol 183(10):6395–6402. doi:10.4049/jimmunol.0900311

    Article  CAS  PubMed  Google Scholar 

  • Moniaga CS, Jeong SK, Egawa G, Nakajima S, Hara-Chikuma M, Jeon JE, Lee SH, Hibino T, Miyachi Y, Kabashima K (2013) Protease activity enhances production of thymic stromal lymphopoietin and basophil accumulation in flaky tail mice. Am J Pathol 182(3):841–851. doi:10.1016/j.ajpath.2012.11.039

    Article  CAS  PubMed  Google Scholar 

  • Moqbel R, Coughlin JJ (2006) Differential secretion of cytokines. Sci STKE 2006(338):pe26. doi:10.1126/stke.3382006pe26

    PubMed  Google Scholar 

  • Morita H, Saito H, Matsumoto K, Nakae S (2016) Regulatory roles of mast cells in immune responses. Semin Immunopathol. doi:10.1007/s00281-016-0566-0

    PubMed  Google Scholar 

  • Movahedi K, Laoui D, Gysemans C, Baeten M, Stange G, Van den Bossche J, Mack M, Pipeleers D, In’t Veld P, De Baetselier P, Van Ginderachter JA (2010) Different tumor microenvironments contain functionally distinct subsets of macrophages derived from Ly6C(high) monocytes. Cancer Res 70(14):5728–5739. doi:10.1158/0008-5472.CAN-09-4672

    Article  CAS  PubMed  Google Scholar 

  • Mucida D, Kutchukhidze N, Erazo A, Russo M, Lafaille JJ, Curotto de Lafaille MA (2005) Oral tolerance in the absence of naturally occurring Tregs. J Clin Invest 115(7):1923–1933. doi:10.1172/JCI24487

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Mueller SN, Germain RN (2009) Stromal cell contributions to the homeostasis and functionality of the immune system. Nat Rev Immunol 9(9):618–629. doi:10.1038/nri2588

    CAS  PubMed  PubMed Central  Google Scholar 

  • Mukai K, BenBarak MJ, Tachibana M, Nishida K, Karasuyama H, Taniuchi I, Galli SJ (2012) Critical role of P1-Runx1 in mouse basophil development. Blood 120(1):76–85. doi:10.1182/blood-2011-12-399113

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Mukherjee S, Schaller MA, Neupane R, Kunkel SL, Lukacs NW (2009) Regulation of T cell activation by Notch ligand, DLL4, promotes IL-17 production and Rorc activation. J Immunol 182(12):7381–7388. doi:10.4049/jimmunol.0804322

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Muller WA (2013) Getting leukocytes to the site of inflammation. Vet Pathol 50(1):7–22

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Munn DH, Sharma MD, Hou D, Baban B, Lee JR, Antonia SJ, Messina JL, Chandler P, Koni PA, Mellor AL (2004) Expression of indoleamine 2,3-dioxygenase by plasmacytoid dendritic cells in tumor-draining lymph nodes. J Clin Invest 114(2):280–290. doi:10.1172/JCI21583

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Munz C, Steinman RM, Fujii S (2005) Dendritic cell maturation by innate lymphocytes: coordinated stimulation of innate and adaptive immunity. J Exp Med 202(2):203–207. doi:10.1084/jem.20050810

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Murali-Krishna K, Altman JD, Suresh M, Sourdive DJ, Zajac AJ, Miller JD, Slansky J, Ahmed R (1998) Counting antigen-specific CD8 T cells: a reevaluation of bystander activation during viral infection. Immunity 8(2):177–187

    Article  CAS  PubMed  Google Scholar 

  • Murphy GF, Sueki H, Teuscher C, Whitaker D, Korngold R (1994) Role of mast cells in early epithelial target cell injury in experimental acute graft-versus-host disease. J Invest Dermatol 102(4):451–461

    Article  CAS  PubMed  Google Scholar 

  • Muto T, Fukuoka A, Kabashima K, Ziegler SF, Nakanishi K, Matsushita K, Yoshimoto T (2014) The role of basophils and proallergic cytokines, TSLP and IL-33, in cutaneously sensitized food allergy. Int Immunol 26(10):539–549. doi:10.1093/intimm/dxu058

    Article  CAS  PubMed  Google Scholar 

  • Nagamine K (1997) Positional cloning of the APECED gene. Nat Genet 17:393–398

    Article  CAS  PubMed  Google Scholar 

  • Nahrendorf M, Swirski FK, Aikawa E, Stangenberg L, Wurdinger T, Figueiredo JL, Libby P, Weissleder R, Pittet MJ (2007) The healing myocardium sequentially mobilizes two monocyte subsets with divergent and complementary functions. J Exp Med 204(12):3037–3047. doi:10.1084/jem.20070885

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Naik SH, Sathe P, Park HY, Metcalf D, Proietto AI, Dakic A, Carotta S, O’Keeffe M, Bahlo M, Papenfuss A, Kwak JY, Wu L, Shortman K (2007) Development of plasmacytoid and conventional dendritic cell subtypes from single precursor cells derived in vitro and in vivo. Nat Immunol 8(11):1217–1226. doi:10.1038/ni1522

    Article  CAS  PubMed  Google Scholar 

  • Nakanishi M, Furuno T (2008) Molecular basis of neuroimmune interaction in an in vitro coculture approach. Cell Mol Immunol 5(4):249–259. doi:10.1038/cmi.2008.31

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Nakatani K, Kaneda K, Seki S, Nakajima Y (2004) Pit cells as liver-associated natural killer cells: morphology and function. Med Electron Microsc 37(1):29–36

    Article  PubMed  Google Scholar 

  • Nasreen M, Ueno T, Saito F, Takahama Y (2003) In vivo treatment of class II MHC-deficient mice with anti-TCR antibody restores the generation of circulating CD4 T cells and optimal architecture of thymic medulla. J Immunol 171:3394–3400

    Article  CAS  PubMed  Google Scholar 

  • Nathan C (2006) Neutrophils and immunity: challenges and opportunities. Nat Rev Immunol 6(3):173–182. doi:10.1038/nri1785

    Article  CAS  PubMed  Google Scholar 

  • Nei Y, Obata-Ninomiya K, Tsutsui H, Ishiwata K, Miyasaka M, Matsumoto K, Nakae S, Kanuka H, Inase N, Karasuyama H (2013) GATA-1 regulates the generation and function of basophils. Proc Natl Acad Sci U S A 110(46):18620–18625. doi:10.1073/pnas.1311668110

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Netea MG, Latz E, Mills KH, O’Neill LA (2015) Innate immune memory: a paradigm shift in understanding host defense. Nat Immunol 16(7):675–679. doi:10.1038/ni.3178

    Article  CAS  PubMed  Google Scholar 

  • Netea MG, Joosten LA, Latz E, Mills KH, Natoli G, Stunnenberg HG, O’Neill LA, Xavier RJ (2016) Trained immunity: A program of innate immune memory in health and disease. Science 352(6284):aaf1098. doi:10.1126/science.aaf1098

    Article  PubMed  CAS  Google Scholar 

  • Neves JS, Weller PF (2009) Functional extracellular eosinophil granules: novel implications in eosinophil immunobiology. Curr Opin Immunol 21(6):694–699. doi:10.1016/j.coi.2009.07.011

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Nieuwenhuis P (1988) The transcapsular route: a new way for (self-) antigens to by-pass the blood–thymus barrier. Immunol Today 9:372–375

    Article  CAS  PubMed  Google Scholar 

  • North RA (2002) Molecular physiology of P2X receptors. Physiol Rev 82(4):1013–1067. doi:10.1152/physrev.00015.2002

    Article  CAS  PubMed  Google Scholar 

  • Nossal GJ, Abbot A, Mitchell J, Lummus Z (1968) Antigens in immunity. XV Ultrastructural features of antigen capture in primary and secondary lymphoid follicles. J Exp Med 127(2):277–290

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Noti M, Wojno ED, Kim BS, Siracusa MC, Giacomin PR, Nair MG, Benitez AJ, Ruymann KR, Muir AB, Hill DA, Chikwava KR, Moghaddam AE, Sattentau QJ, Alex A, Zhou C, Yearley JH, Menard-Katcher P, Kubo M, Obata-Ninomiya K, Karasuyama H, Comeau MR, Brown-Whitehorn T, de Waal MR, Sleiman PM, Hakonarson H, Cianferoni A, Falk GW, Wang ML, Spergel JM, Artis D (2013) Thymic stromal lymphopoietin-elicited basophil responses promote eosinophilic esophagitis. Nat Med 19(8):1005–1013. doi:10.1038/nm.3281

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Noti M, Kim BS, Siracusa MC, Rak GD, Kubo M, Moghaddam AE, Sattentau QA, Comeau MR, Spergel JM, Artis D (2014) Exposure to food allergens through inflamed skin promotes intestinal food allergy through the thymic stromal lymphopoietin-basophil axis. J Allergy Clin Immunol 133(5):1390–1399 . doi:10.1016/j.jaci.2014.01.0211399 e1391–1396

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Novak I (2003) ATP as a signaling molecule: the exocrine focus. News Physiol Sci 18:12–17

    CAS  PubMed  Google Scholar 

  • Novak J, Griseri T, Beaudoin L, Lehuen A (2007) Regulation of type 1 diabetes by NKT cells. Int Rev Immunol 26(1–2):49–72. doi:10.1080/08830180601070229

    Article  CAS  PubMed  Google Scholar 

  • Nutt SL, Tarlinton DM (2011) Germinal center B and follicular helper T cells: siblings, cousins or just good friends? Nat Immunol 12(6):472–477

    Article  CAS  PubMed  Google Scholar 

  • Nutt SL, Hodgkin PD, Tarlinton DM, Corcoran LM (2015) The generation of antibody-secreting plasma cells. Nat Rev Immunol 15(3):160–171. doi:10.1038/nri3795

    Article  CAS  PubMed  Google Scholar 

  • O’Brien RL, Roark CL, Jin N, Aydintug MK, French JD, Chain JL, Wands JM, Johnston M, Born WK (2007) gammadelta T-cell receptors: functional correlations. Immunol Rev 215:77–88. doi:10.1111/j.1600-065X.2006.00477.x

    Article  PubMed  Google Scholar 

  • O’Connell J, Bennett MW, Nally K, Houston A, O’Sullivan GC, Shanahan F (2000) Altered mechanisms of apoptosis in colon cancer: Fas resistance and counterattack in the tumor-immune conflict. Ann N Y Acad Sci 910:178–192 discussion 193-175

    Article  PubMed  Google Scholar 

  • O’Farrelly C (2004) Immunoregulation in the liver and its extrahepatic relevance. J Pediatr Gastroenterol Nutr 39:S727–S728

    Article  PubMed  Google Scholar 

  • Obata-Ninomiya K, Ishiwata K, Tsutsui H, Nei Y, Yoshikawa S, Kawano Y, Minegishi Y, Ohta N, Watanabe N, Kanuka H, Karasuyama H (2013) The skin is an important bulwark of acquired immunity against intestinal helminths. J Exp Med 210(12):2583–2595. doi:10.1084/jem.20130761

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ochando JC, Homma C, Yang Y, Hidalgo A, Garin A, Tacke F, Angeli V, Li Y, Boros P, Ding Y, Jessberger R, Trinchieri G, Lira SA, Randolph GJ, Bromberg JS (2006) Alloantigen-presenting plasmacytoid dendritic cells mediate tolerance to vascularized grafts. Nat Immunol 7(6):652–662. doi:10.1038/ni1333

    Article  CAS  PubMed  Google Scholar 

  • Ogino S, Shima K, Baba Y, Nosho K, Irahara N, Kure S, Chen L, Toyoda S, Kirkner GJ, Wang YL, Giovannucci EL, Fuchs CS (2009) Colorectal cancer expression of peroxisome proliferator-activated receptor gamma (PPARG, PPARgamma) is associated with good prognosis. Gastroenterology 136(4):1242–1250. doi:10.1053/j.gastro.2008.12.048

    Article  CAS  PubMed  Google Scholar 

  • Ohnmacht C, Voehringer D (2009) Basophil effector function and homeostasis during helminth infection. Blood 113(12):2816–2825. doi:10.1182/blood-2008-05-154773

    Article  CAS  PubMed  Google Scholar 

  • Okada T, Cyster JG (2007) CC chemokine receptor 7 contributes to Gi-dependent T cell motility in the lymph node. J Immunol 178(5):2973–2978

    Article  CAS  PubMed  Google Scholar 

  • Onai N, Obata-Onai A, Schmid MA, Ohteki T, Jarrossay D, Manz MG (2007) Identification of clonogenic common Flt3+M-CSFR+ plasmacytoid and conventional dendritic cell progenitors in mouse bone marrow. Nat Immunol 8(11):1207–1216. doi:10.1038/ni1518

    Article  CAS  PubMed  Google Scholar 

  • Onder L, Narang P, Scandella E, Chai Q, Iolyeva M, Hoorweg K, Halin C, Richie E, Kaye P, Westermann J, Cupedo T, Coles M, Ludewig B (2012) IL-7-producing stromal cells are critical for lymph node remodeling. Blood 120(24):4675–4683. doi:10.1182/blood-2012-03-416859

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ostuni R, Natoli G (2013) Lineages, cell types and functional states: a genomic view. Curr Opin Cell Biol 25(6):759–764. doi:10.1016/j.ceb.2013.07.006

    Article  CAS  PubMed  Google Scholar 

  • Otsuka A, Nakajima S, Kubo M, Egawa G, Honda T, Kitoh A, Nomura T, Hanakawa S, Sagita Moniaga C, Kim B, Matsuoka S, Watanabe T, Miyachi Y, Kabashima K (2013) Basophils are required for the induction of Th2 immunity to haptens and peptide antigens. Nat Commun 4:1739. doi:10.1038/ncomms2740

    Article  PubMed  CAS  Google Scholar 

  • Ouellette AJ, Hsieh MM, Nosek MT, Cano-Gauci DF, Huttner KM, Buick RN, Selsted ME (1994) Mouse Paneth cell defensins: primary structures and antibacterial activities of numerous cryptdin isoforms. Infect Immun 62(11):5040–5047

    CAS  PubMed  PubMed Central  Google Scholar 

  • Oury C, Toth-Zsamboki E, Vermylen J, Hoylaerts MF (2006) The platelet ATP and ADP receptors. Curr Pharm Des 12(7):859–875

    Article  CAS  PubMed  Google Scholar 

  • Ouyang W, Kolls JK, Zheng Y (2008) The biological functions of T helper 17 cell effector cytokines in inflammation. Immunity 28(4):454–467. doi:10.1016/j.immuni.2008.03.004

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Pabst R (2007) Plasticity and heterogeneity of lymphoid organs. What are the criteria to call a lymphoid organ primary, secondary or tertiary? Immunol Lett 112(1):1–8. doi:10.1016/j.imlet.2007.06.009

    Article  CAS  PubMed  Google Scholar 

  • Pabst O, Mowat AM (2012) Oral tolerance to food protein. Mucosal Immunol 5(3):232–239. doi:10.1038/mi.2012.4

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Padigel UM, Lee JJ, Nolan TJ, Schad GA, Abraham D (2006) Eosinophils can function as antigen-presenting cells to induce primary and secondary immune responses to Strongyloides stercoralis. Infect Immun 74(6):3232–3238. doi:10.1128/IAI.02067-05

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Palframan RT, Jung S, Cheng G, Weninger W, Luo Y, Dorf M, Littman DR, Rollins BJ, Zweerink H, Rot A, von Andrian UH (2001) Inflammatory chemokine transport and presentation in HEV: a remote control mechanism for monocyte recruitment to lymph nodes in inflamed tissues. J Exp Med 194(9):1361–1373

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Pape KA, Taylor JJ, Maul RW, Gearhart PJ, Jenkins MK (2011) Different B cell populations mediate early and late memory during an endogenous immune response. Science 331(6021):1203–1207. doi:10.1126/science.1201730

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Pappu R, Schwab SR, Cornelissen I, Pereira JP, Regard JB, Xu Y, Camerer E, Zheng YW, Huang Y, Cyster JG, Coughlin SR (2007) Promotion of lymphocyte egress into blood and lymph by distinct sources of sphingosine-1-phosphate. Science 316(5822):295–298. doi:10.1126/science.1139221

    Article  CAS  PubMed  Google Scholar 

  • Parker GA, Picut CA (2005) Liver immunobiology. Toxicol Pathol 33(1):52–62

    Article  CAS  PubMed  Google Scholar 

  • Parker GA, Picut CA (2012) Immune functioning in non lymphoid organs: the liver. Toxicol Pathol 40(2):237–247

    Article  CAS  PubMed  Google Scholar 

  • Parkes GC, Brostoff J, Whelan K, Sanderson JD (2008) Gastrointestinal microbiota in irritable bowel syndrome: their role in its pathogenesis and treatment. Am J Gastroenterol 103(6):1557–1567. doi:10.1111/j.1572-0241.2008.01869.x

    Article  PubMed  Google Scholar 

  • Parretta E, Cassese G, Barba P, Santoni A, Guardiola J, Di Rosa F (2005) CD8 cell division maintaining cytotoxic memory occurs predominantly in the bone marrow. J Immunol 174(12):7654–7664

    Article  CAS  PubMed  Google Scholar 

  • Pasparakis M, Alexopoulou L, Douni E, Kollias G (1996) Tumour necrosis factors in immune regulation: everything that’s interesting is…new! Cytokine Growth Factor Rev 7(3):223–229

    Article  CAS  PubMed  Google Scholar 

  • Patt HM, Maloney MA (1975) Bone marrow regeneration after local injury: a review. Exp Hematol 3(2):135–148

    CAS  PubMed  Google Scholar 

  • Pearse M (1989) A murine early thymocyte developmental sequence is marked by transient expression of the interleukin 2 receptor. Proc Natl Acad Sci U S A 86:1614–1618

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Pelletier M, Maggi L, Micheletti A, Lazzeri E, Tamassia N, Costantini C, Cosmi L, Lunardi C, Annunziato F, Romagnani S, Cassatella MA (2010) Evidence for a cross-talk between human neutrophils and Th17 cells. Blood 115(2):335–343. doi:10.1182/blood-2009-04-216085

    Article  CAS  PubMed  Google Scholar 

  • Penna G, Sozzani S, Adorini L (2001) Cutting edge: selective usage of chemokine receptors by plasmacytoid dendritic cells. J Immunol 167(4):1862–1866

    Article  CAS  PubMed  Google Scholar 

  • Perdiguero EG, Geissmann F (2015) The development and maintenance of resident macrophages. Nat Immunol 17(1):2–8. doi:10.1038/ni.3341

    Article  CAS  Google Scholar 

  • Pereira JP, An J, Xu Y, Huang Y, Cyster JG (2009) Cannabinoid receptor 2 mediates the retention of immature B cells in bone marrow sinusoids. Nat Immunol 10(4):403–411. doi:10.1038/ni.1710

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Perillo NL, Pace KE, Seilhamer JJ, Baum LG (1995) Apoptosis of T cells mediated by galectin-1. Nature 378(6558):736–739

    Article  CAS  PubMed  Google Scholar 

  • Perrigoue JG, Saenz SA, Siracusa MC, Allenspach EJ, Taylor BC, Giacomin PR, Nair MG, Du Y, Zaph C, van Rooijen N, Comeau MR, Pearce EJ, Laufer TM, Artis D (2009) MHC class II-dependent basophil-CD4+ T cell interactions promote T(H)2 cytokine-dependent immunity. Nat Immunol 10(7):697–705. doi:10.1038/ni.1740

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Peschon JJ (1994) Early lymphocyte expansion is severely impaired in interleukin 7 receptor-deficient mice. J Exp Med 180:1955–1960

    Article  CAS  PubMed  Google Scholar 

  • Peters NC, Egen JG, Secundino N, Debrabant A, Kimblin N, Kamhawi S, Lawyer P, Fay MP, Germain RN, Sacks D (2008) In vivo imaging reveals an essential role for neutrophils in leishmaniasis transmitted by sand flies. Science 321(5891):970–974. doi:10.1126/science.1159194

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Peterson EJ, Kireev D, Moon AF, Midon M, Janzen WP, Pingoud A, Pedersen LC, Singleton SF (2013) Inhibitors of Streptococcus pneumoniae surface endonuclease EndA discovered by high-throughput screening using a PicoGreen fluorescence assay. J Biomol Screen 18(3):247–257. doi:10.1177/1087057112461153

    Article  CAS  PubMed  Google Scholar 

  • Petrella T, Facchetti F (2010) Tumoral aspects of plasmacytoid dendritic cells: what do we know in 2009? Autoimmunity 43(3):210–214. doi:10.3109/08916930903510898

    Article  CAS  PubMed  Google Scholar 

  • Petrie HT (2003) Cell migration and the control of post-natal T-cell lymphopoiesis in the thymus. Nat Rev Immunol 3:859–866

    Article  CAS  PubMed  Google Scholar 

  • Pham TH, Okada T, Matloubian M, Lo CG, Cyster JG (2008) S1P1 receptor signaling overrides retention mediated by G alpha i-coupled receptors to promote T cell egress. Immunity 28(1):122–133. doi:10.1016/j.immuni.2007.11.017

    Article  CAS  PubMed  Google Scholar 

  • Pham TH, Baluk P, Xu Y, Grigorova I, Bankovich AJ, Pappu R, Coughlin SR, McDonald DM, Schwab SR, Cyster JG (2010) Lymphatic endothelial cell sphingosine kinase activity is required for lymphocyte egress and lymphatic patterning. J Exp Med 207(1):17–27. doi:10.1084/jem.20091619

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Phan TG, Grigorova I, Okada T, Cyster JG (2007) Subcapsular encounter and complement-dependent transport of immune complexes by lymph node B cells. Nat Immunol 8(9):992–1000. doi:10.1038/ni1494

    Article  CAS  PubMed  Google Scholar 

  • Pope M, Betjes MG, Romani N, Hirmand H, Cameron PU, Hoffman L, Gezelter S, Schuler G, Steinman RM (1994) Conjugates of dendritic cells and memory T lymphocytes from skin facilitate productive infection with HIV-1. Cell 78(3):389–398

    Article  CAS  PubMed  Google Scholar 

  • Popken-Harris P, Checkel J, Loegering D, Madden B, Springett M, Kephart G, Gleich GJ (1998) Regulation and processing of a precursor form of eosinophil granule major basic protein (ProMBP) in differentiating eosinophils. Blood 92(2):623–631

    CAS  PubMed  Google Scholar 

  • Porcelli S, Yockey CE, Brenner MB, Balk SP (1993) Analysis of T cell antigen receptor (TCR) expression by human peripheral blood CD4-8- alpha/beta T cells demonstrates preferential use of several V beta genes and an invariant TCR alpha chain. J Exp Med 178(1):1–16

    Article  CAS  PubMed  Google Scholar 

  • Porter EM, Bevins CL, Ghosh D, Ganz T (2002) The multifaceted Paneth cell. Cell Mol Life Sci 59(1):156–170

    Article  CAS  PubMed  Google Scholar 

  • Prlic M, Blazar BR, Khoruts A, Zell T, Jameson SC (2001) Homeostatic expansion occurs independently of costimulatory signals. J Immunol 167(10):5664–5668

    Article  CAS  PubMed  Google Scholar 

  • Profet M (1991) The function of allergy: immunological defense against toxins. Q Rev Biol 66(1):23–62

    Article  CAS  PubMed  Google Scholar 

  • Proietto AI, van Dommelen S, Zhou P, Rizzitelli A, D’Amico A, Steptoe RJ, Naik SH, Lahoud MH, Liu Y, Zheng P, Shortman K, Wu L (2008) Dendritic cells in the thymus contribute to T-regulatory cell induction. Proc Natl Acad Sci U S A 105(50):19869–19874. doi:10.1073/pnas.0810268105

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Qi X, Hong J, Chaves L, Zhuang Y, Chen Y, Wang D, Chabon J, Graham B, Ohmori K, Li Y, Huang H (2013) Antagonistic regulation by the transcription factors C/EBPalpha and MITF specifies basophil and mast cell fates. Immunity 39(1):97–110. doi:10.1016/j.immuni.2013.06.012

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Qian BZ, Li J, Zhang H, Kitamura T, Zhang J, Campion LR, Kaiser EA, Snyder LA, Pollard JW (2011) CCL2 recruits inflammatory monocytes to facilitate breast-tumour metastasis. Nature 475(7355):222–225. doi:10.1038/nature10138

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Qin G, Mao H, Zheng J, Sia SF, Liu Y, Chan PL, Lam KT, Peiris JS, Lau YL, Tu W (2009) Phosphoantigen-expanded human gammadelta T cells display potent cytotoxicity against monocyte-derived macrophages infected with human and avian influenza viruses. J Infect Dis 200(6):858–865. doi:10.1086/605413

    Article  CAS  PubMed  Google Scholar 

  • Rabinovich GA, Iglesias MM, Modesti NM, Castagna LF, Wolfenstein-Todel C, Riera CM, Sotomayor CE (1998) Activated rat macrophages produce a galectin-1-like protein that induces apoptosis of T cells: biochemical and functional characterization. J Immunol 160(10):4831–4840

    CAS  PubMed  Google Scholar 

  • Radbruch A, Muehlinghaus G, Luger EO, Inamine A, Smith KG, Dorner T, Hiepe F (2006) Competence and competition: the challenge of becoming a long-lived plasma cell. Nat Rev Immunol 6(10):741–750. doi:10.1038/nri1886

    Article  CAS  PubMed  Google Scholar 

  • Radsak M, Iking-Konert C, Stegmaier S, Andrassy K, Hansch GM (2000) Polymorphonuclear neutrophils as accessory cells for T-cell activation: major histocompatibility complex class II restricted antigen-dependent induction of T-cell proliferation. Immunology 101(4):521–530

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Radtke F, Fasnacht N, Macdonald HR (2010) Notch signaling in the immune system. Immunity 32(1):14–27. doi:10.1016/j.immuni.2010.01.004

    Article  CAS  PubMed  Google Scholar 

  • Rajput AB, Turbin DA, Cheang MC, Voduc DK, Leung S, Gelmon KA, Gilks CB, Huntsman DG (2008) Stromal mast cells in invasive breast cancer are a marker of favourable prognosis: a study of 4,444 cases. Breast Cancer Res Treat 107(2):249–257. doi:10.1007/s10549-007-9546-3

    Article  PubMed  Google Scholar 

  • Raman C, Knight KL (1992) CD5+ B cells predominate in peripheral tissues of rabbit. J Immunol 149(12):3858–3864

    CAS  PubMed  Google Scholar 

  • Ramsdell F, Jenkins M, Dinh Q, Fowlkes BJ (1991) The majority of CD4+8- thymocytes are functionally immature. J Immunol 147:1779–1785

    CAS  PubMed  Google Scholar 

  • Randolph GJ, Angeli V, Swartz MA (2005) Dendritic-cell trafficking to lymph nodes through lymphatic vessels. Nat Rev Immunol 5(8):617–628. doi:10.1038/nri1670

    Article  CAS  PubMed  Google Scholar 

  • Rao KN, Smuda C, Gregory GD, Min B, Brown MA (2013) Ikaros limits basophil development by suppressing C/EBP-alpha expression. Blood 122(15):2572–2581. doi:10.1182/blood-2013-04-494625

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Raulet DH (1989) The structure, function, and molecular genetics of the gamma/delta T cell receptor. Annu Rev Immunol 7:175–207. doi:10.1146/annurev.iy.07.040189.001135

    Article  CAS  PubMed  Google Scholar 

  • Raulet DH, Garman RD, Saito H, Tonegawa S (1985) Developmental regulation of T-cell receptor gene expression. Nature 314:103–107

    Article  CAS  PubMed  Google Scholar 

  • Ravetch JV (1994) Fc receptors: rubor redux. Cell 78(4):553–560

    Article  CAS  PubMed  Google Scholar 

  • Ravichandran KS (2011) Beginnings of a good apoptotic meal: the find-me and eat-me signaling pathways. Immunity 35(4):445–455. doi:10.1016/j.immuni.2011.09.004

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Reichert RA, Weissman IL, Butcher EC (1986) Phenotypic analysis of thymocytes that express homing receptors for peripheral lymph nodes. J Immunol 136:3521–3528

    CAS  PubMed  Google Scholar 

  • Reizis B (2010) Regulation of plasmacytoid dendritic cell development. Curr Opin Immunol 22(2):206–211. doi:10.1016/j.coi.2010.01.005

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Reizis B, Bunin A, Ghosh HS, Lewis KL, Sisirak V (2011) Plasmacytoid dendritic cells: recent progress and open questions. Annu Rev Immunol 29:163–183. doi:10.1146/annurev-immunol-031210-101345

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Romani L, Mencacci A, Cenci E, Spaccapelo R, Del Sero G, Nicoletti I, Trinchieri G, Bistoni F, Puccetti P (1997) Neutrophil production of IL-12 and IL-10 in candidiasis and efficacy of IL-12 therapy in neutropenic mice. J Immunol 158(11):5349–5356

    CAS  PubMed  Google Scholar 

  • Ronnberg E, Melo FR, Pejler G (2012) Mast cell proteoglycans. J Histochem Cytochem 60(12):950–962. doi:10.1369/0022155412458927

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Roosnek E, Burjanadze M, Dietrich PY, Matthes T, Passweg J, Huard B (2009) Tumors that look for their springtime in APRIL. Crit Rev Oncol Hematol 72(2):91–97. doi:10.1016/j.critrevonc.2009.01.006

    Article  CAS  PubMed  Google Scholar 

  • Roozendaal R, Mebius RE, Kraal G (2008) The conduit system of the lymph node. Int Immunol 20(12):1483–1487. doi:10.1093/intimm/dxn110

    Article  CAS  PubMed  Google Scholar 

  • Roozendaal R, Mempel TR, Pitcher LA, Gonzalez SF, Verschoor A, Mebius RE, von Andrian UH, Carroll MC (2009) Conduits mediate transport of low-molecular-weight antigen to lymph node follicles. Immunity 30(2):264–276. doi:10.1016/j.immuni.2008.12.014

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rosen SD (2004) Ligands for L-selectin: homing, inflammation, and beyond. Annu Rev Immunol 22:129–156. doi:10.1146/annurev.immunol.21.090501.080131

    Article  CAS  PubMed  Google Scholar 

  • Rossjohn J, Pellicci DG, Patel O, Gapin L, Godfrey DI (2012) Recognition of CD1d-restricted antigens by natural killer T cells. Nat Rev Immunol 12(12):845–857. doi:10.1038/nri3328

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rothenberg EV, Champhekar A (2013) T-lymphocyte developmental biology. In: Paul WE (ed) Fundamental immunology. Wolters Kluwer/Lippincott Williams & Wilkins, Philadelphia, pp 325–354

    Google Scholar 

  • Rubinstein D, Roska AK, Lipsky PE (1986) Liver sinusoidal lining cells express class II major histocompatibility antigens but are poor stimulators of fresh allogeneic T lymphocytes. J Immunol 137(6):1803–1810

    CAS  PubMed  Google Scholar 

  • Rubinstein D, Roska AK, Lipsky PE (1987) Antigen presentation by liver sinusoidal lining cells after antigen exposure in vivo. J Immunol 138(5):1377–1382

    CAS  PubMed  Google Scholar 

  • Ryan EJ, Marshall AJ, Magaletti D, Floyd H, Draves KE, Olson NE, Clark EA (2002) Dendritic cell-associated lectin-1: a novel dendritic cell-associated, C-type lectin-like molecule enhances T cell secretion of IL-4. J Immunol 169(10):5638–5648

    Article  CAS  PubMed  Google Scholar 

  • Ryan AE, Shanahan F, O’Connell J, Houston AM (2006) Fas ligand promotes tumor immune evasion of colon cancer in vivo. Cell Cycle 5(3):246–249

    Article  CAS  PubMed  Google Scholar 

  • Sagiv JY, Michaeli J, Assi S, Mishalian I, Kisos H, Levy L, Damti P, Lumbroso D, Polyansky L, Sionov RV, Ariel A, Hovav AH, Henke E, Fridlender ZG, Granot Z (2015) Phenotypic diversity and plasticity in circulating neutrophil subpopulations in cancer. Cell Rep 10(4):562–573. doi:10.1016/j.celrep.2014.12.039

    Article  CAS  PubMed  Google Scholar 

  • Sainte-Marie G, Leblond CP (1964) Cytologic features and cellular migration in the cortex and medulla of thymus in the young adult rat. Blood 23:275–299

    CAS  PubMed  Google Scholar 

  • Saito T, Chiba S, Ichikawa M, Kunisato A, Asai T, Shimizu K, Yamaguchi T, Yamamoto G, Seo S, Kumano K, Nakagami-Yamaguchi E, Hamada Y, Aizawa S, Hirai H (2003) Notch2 is preferentially expressed in mature B cells and indispensable for marginal zone B lineage development. Immunity 18(5):675–685

    Article  CAS  PubMed  Google Scholar 

  • Salio M, Silk JD, Jones EY, Cerundolo V (2014) Biology of CD1- and MR1-restricted T cells. Annu Rev Immunol 32:323–366. doi:10.1146/annurev-immunol-032713-120243

    Article  CAS  PubMed  Google Scholar 

  • Sallusto F, Cella M, Danieli C, Lanzavecchia A (1995) Dendritic cells use macropinocytosis and the mannose receptor to concentrate macromolecules in the major histocompatibility complex class II compartment: downregulation by cytokines and bacterial products. J Exp Med 182(2):389–400

    Article  CAS  PubMed  Google Scholar 

  • Salzman NH (2010) Paneth cell defensins and the regulation of the microbiome: detente at mucosal surfaces. Gut Microbes 1(6):401–406. doi:10.4161/gmic.1.6.14076

    Article  PubMed  PubMed Central  Google Scholar 

  • Salzman NH, Ghosh D, Huttner KM, Paterson Y, Bevins CL (2003) Protection against enteric salmonellosis in transgenic mice expressing a human intestinal defensin. Nature 422(6931):522–526. doi:10.1038/nature01520

    Article  CAS  PubMed  Google Scholar 

  • Salzman NH, Hung K, Haribhai D, Chu H, Karlsson-Sjoberg J, Amir E, Teggatz P, Barman M, Hayward M, Eastwood D, Stoel M, Zhou Y, Sodergren E, Weinstock GM, Bevins CL, Williams CB, Bos NA (2010) Enteric defensins are essential regulators of intestinal microbial ecology. Nat Immunol 11(1):76–83. doi:10.1038/ni.1825

    Article  CAS  PubMed  Google Scholar 

  • Samoszuk M, Corwin MA (2003) Mast cell inhibitor cromolyn increases blood clotting and hypoxia in murine breast cancer. Int J Cancer 107(1):159–163. doi:10.1002/ijc.11340

    Article  CAS  PubMed  Google Scholar 

  • Samoszuk MK, Su MY, Najafi A, Nalcioglu O (2001) Selective thrombosis of tumor blood vessels in mammary adenocarcinoma implants in rats. Am J Pathol 159(1):245–251. doi:10.1016/S0002-9440(10)61690-2

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sanin DE, Pearce EJ (2015) The cell identity of cytotoxic T lymphocytes. Nat Immunol 17(1):45–46. doi:10.1038/ni.3350

    Article  CAS  Google Scholar 

  • Sanos SL, Bui VL, Mortha A, Oberle K, Heners C, Johner C, Diefenbach A (2009) RORgammat and commensal microflora are required for the differentiation of mucosal interleukin 22-producing NKp46+ cells. Nat Immunol 10(1):83–91. doi:10.1038/ni.1684

    Article  CAS  PubMed  Google Scholar 

  • Sapoznikov A, Pewzner-Jung Y, Kalchenko V, Krauthgamer R, Shachar I, Jung S (2008) Perivascular clusters of dendritic cells provide critical survival signals to B cells in bone marrow niches. Nat Immunol 9(4):388–395. doi:10.1038/ni1571

    Article  CAS  PubMed  Google Scholar 

  • Sartor RB (2008) Microbial influences in inflammatory bowel diseases. Gastroenterology 134(2):577–594. doi:10.1053/j.gastro.2007.11.059

    Article  CAS  PubMed  Google Scholar 

  • Sato T, Yamamoto H, Sasaki C, Wake K (1998) Maturation of rat dendritic cells during intrahepatic translocation evaluated using monoclonal antibodies and electron microscopy. Cell Tissue Res 294(3):503–514

    Article  CAS  PubMed  Google Scholar 

  • Satoh-Takayama N, Vosshenrich CA, Lesjean-Pottier S, Sawa S, Lochner M, Rattis F, Mention JJ, Thiam K, Cerf-Bensussan N, Mandelboim O, Eberl G, Di Santo JP (2008) Microbial flora drives interleukin 22 production in intestinal NKp46+ cells that provide innate mucosal immune defense. Immunity 29(6):958–970. doi:10.1016/j.immuni.2008.11.001

    Article  CAS  PubMed  Google Scholar 

  • Satpathy AT, Wu X, Albring JC, Murphy KM (2012) Re(de)fining the dendritic cell lineage. Nat Immunol 13(12):1145–1154. doi:10.1038/ni.2467

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Scapini P, Laudanna C, Pinardi C, Allavena P, Mantovani A, Sozzani S, Cassatella MA (2001) Neutrophils produce biologically active macrophage inflammatory protein-3alpha (MIP-3alpha)/CCL20 and MIP-3beta/CCL19. Eur J Immunol 31:–1988. doi:10.1002/1521-4141(200107)31:7<1981::AID-IMMU1981>3.0.CO;2-X

  • Scapini P, Bazzoni F, Cassatella MA (2008) Regulation of B-cell-activating factor (BAFF)/B lymphocyte stimulator (BLyS) expression in human neutrophils. Immunol Lett 116(1):1–6. doi:10.1016/j.imlet.2007.11.009

    Article  CAS  PubMed  Google Scholar 

  • Scapini P, Tamassia N, Pucillo C, Cassatella MA (2013) Granulocytes and mast cells. In: Paul WE (ed) Fundamental immunology. Wolters Kluwer/Lippincott Williams & Wilkins, Philadelphia, pp 468–486

    Google Scholar 

  • Schroeder JT (2011) Basophils: emerging roles in the pathogenesis of allergic disease. Immunol Rev 242(1):144–160. doi:10.1111/j.1600-065X.2011.01023.x

    Article  CAS  PubMed  Google Scholar 

  • Schulz C, Gomez Perdiguero E, Chorro L, Szabo-Rogers H, Cagnard N, Kierdorf K, Prinz M, Wu B, Jacobsen SE, Pollard JW, Frampton J, Liu KJ, Geissmann F (2012) A lineage of myeloid cells independent of Myb and hematopoietic stem cells. Science 336(6077):86–90. doi:10.1126/science.1219179

    Article  CAS  PubMed  Google Scholar 

  • Schwab SR, Pereira JP, Matloubian M, Xu Y, Huang Y, Cyster JG (2005) Lymphocyte sequestration through S1P lyase inhibition and disruption of S1P gradients. Science 309(5741):1735–1739. doi:10.1126/science.1113640

    Article  CAS  PubMed  Google Scholar 

  • Schwartz LB (1990) Tryptase, a mediator of human mast cells. J Allergy Clin Immunol 86(4 Pt 2):594–598

    Article  CAS  PubMed  Google Scholar 

  • Schwartz C, Voehringer D (2014) Identification of murine basophils by flow cytometry and histology. Methods Mol Biol 1192:229–237. doi:10.1007/978-1-4939-1173-8_17

    Article  PubMed  Google Scholar 

  • Schwartz C, Turqueti-Neves A, Hartmann S, Yu P, Nimmerjahn F, Voehringer D (2014) Basophil-mediated protection against gastrointestinal helminths requires IgE-induced cytokine secretion. Proc Natl Acad Sci U S A 111(48):E5169–E5177. doi:10.1073/pnas.1412663111

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Schwickert TA, Victora GD, Fooksman DR, Kamphorst AO, Mugnier MR, Gitlin AD, Dustin ML, Nussenzweig MC (2011) A dynamic T cell-limited checkpoint regulates affinity-dependent B cell entry into the germinal center. J Exp Med 208(6):1243–1252. doi:10.1084/jem.20102477

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Scollay R, Godfrey DI (1995) Thymic emigration: conveyor belts or lucky dips? Immunol Today 16(6):268–273 . doi:10.1016/0167-5699(95)80179-0discussion 273-264

    Article  CAS  PubMed  Google Scholar 

  • Scollay RG, Butcher EC, Weissman IL (1980) Thymus cell migration. Quantitative aspects of cellular traffic from the thymus to the periphery in mice. Eur J Immunol 10(3):210–218

    Article  CAS  PubMed  Google Scholar 

  • Segawa K, Kurata S, Yanagihashi Y, Brummelkamp TR, Matsuda F, Nagata S (2014) Caspase-mediated cleavage of phospholipid flippase for apoptotic phosphatidylserine exposure. Science 344(6188):1164–1168. doi:10.1126/science.1252809

    Article  CAS  PubMed  Google Scholar 

  • Serafini P, De Santo C, Marigo I, Cingarlini S, Dolcetti L, Gallina G, Zanovello P, Bronte V (2004) Derangement of immune responses by myeloid suppressor cells. Cancer Immunol Immunother 53(2):64–72. doi:10.1007/s00262-003-0443-2

    Article  CAS  PubMed  Google Scholar 

  • Serafini P, Borrello I, Bronte V (2006) Myeloid suppressor cells in cancer: recruitment, phenotype, properties, and mechanisms of immune suppression. Semin Cancer Biol 16(1):53–65. doi:10.1016/j.semcancer.2005.07.005

    Article  CAS  PubMed  Google Scholar 

  • Serbina NV, Jia T, Hohl TM, Pamer EG (2008) Monocyte-mediated defense against microbial pathogens. Annu Rev Immunol 26:421–452. doi:10.1146/annurev.immunol.26.021607.090326

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Serbina NV, Cherny M, Shi C, Bleau SA, Collins NH, Young JW, Pamer EG (2009a) Distinct responses of human monocyte subsets to Aspergillus fumigatus conidia. J Immunol 183(4):2678–2687. doi:10.4049/jimmunol.0803398

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Serbina NV, Hohl TM, Cherny M, Pamer EG (2009b) Selective expansion of the monocytic lineage directed by bacterial infection. J Immunol 183(3):1900–1910. doi:10.4049/jimmunol.0900612

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Serhan CN (2007) Resolution phase of inflammation: novel endogenous anti-inflammatory and proresolving lipid mediators and pathways. Annu Rev Immunol 25:101–137. doi:10.1146/annurev.immunol.25.022106.141647

    Article  CAS  PubMed  Google Scholar 

  • Serriari NE, Eoche M, Lamotte L, Lion J, Fumery M, Marcelo P, Chatelain D, Barre A, Nguyen-Khac E, Lantz O, Dupas JL, Treiner E (2014) Innate mucosal-associated invariant T (MAIT) cells are activated in inflammatory bowel diseases. Clin Exp Immunol 176(2):266–274. doi:10.1111/cei.12277

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Seternes T, Sorensen K, Smedsrod B (2002) Scavenger endothelial cells of vertebrates: a nonperipheral leukocyte system for high-capacity elimination of waste macromolecules. Proc Natl Acad Sci U S A 99(11):7594–7597

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Shamri R, Xenakis JJ, Spencer LA (2011) Eosinophils in innate immunity: an evolving story. Cell Tissue Res 343(1):57–83. doi:10.1007/s00441-010-1049-6

    Article  PubMed  Google Scholar 

  • Shaw JH, Print CG (1989) Postsplenectomy sepsis. Br J Surg 76(10):1074–1081

    Article  CAS  PubMed  Google Scholar 

  • Shaw PX, Horkko S, Chang MK, Curtiss LK, Palinski W, Silverman GJ, Witztum JL (2000) Natural antibodies with the T15 idiotype may act in atherosclerosis, apoptotic clearance, and protective immunity. J Clin Invest 105(12):1731–1740. doi:10.1172/JCI8472

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Shelburne CP, Abraham SN (2011) The mast cell in innate and adaptive immunity. Adv Exp Med Biol 716:162–185. doi:10.1007/978-1-4419-9533-9_10

    Article  CAS  PubMed  Google Scholar 

  • Shi HZ, Humbles A, Gerard C, Jin Z, Weller PF (2000) Lymph node trafficking and antigen presentation by endobronchial eosinophils. J Clin Invest 105(7):945–953. doi:10.1172/JCI8945

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Shimamura M, Ohteki T, Launois P, Garcia AM, MacDonald HR (1997) Thymus-independent generation of NK1+ T cells in vitro from fetal liver precursors. J Immunol 158(8):3682–3689

    CAS  PubMed  Google Scholar 

  • Shinkai Y (1992) RAG-2-deficient mice lack mature lymphocytes owing to inability to initiate V(D)J rearrangement. Cell 68:855–867

    Article  CAS  PubMed  Google Scholar 

  • Shinkai K, Mohrs M, Locksley RM (2002) Helper T cells regulate type-2 innate immunity in vivo. Nature 420(6917):825–829. doi:10.1038/nature01202

    Article  CAS  PubMed  Google Scholar 

  • Shiow LR, Rosen DB, Brdickova N, Xu Y, An J, Lanier LL, Cyster JG, Matloubian M (2006) CD69 acts downstream of interferon-alpha/beta to inhibit S1P1 and lymphocyte egress from lymphoid organs. Nature 440(7083):540–544. doi:10.1038/nature04606

    Article  CAS  PubMed  Google Scholar 

  • Shlomchik MJ, Weisel F (2012) Germinal center selection and the development of memory B and plasma cells. Immunol Rev 247(1):52–63. doi:10.1111/j.1600-065X.2012.01124.x

    Article  PubMed  Google Scholar 

  • Shores EW, van Ewijk W, Singer A (1991) Disorganization and restoration of thymic medullary epithelial cells in T cell receptor-negative scid mice: evidence that receptor-bearing lymphocytes influence maturation of the thymic microenvironment. Eur J Immunol 21:1657–1661

    Article  CAS  PubMed  Google Scholar 

  • Shores EW, Van Ewijk W, Singer A (1994) Maturation of medullary thymic epithelium requires thymocytes expressing fully assembled CD3-TCR complexes. Int Immunol 6(9):1393–1402

    Article  CAS  PubMed  Google Scholar 

  • Shortman K, Liu YJ (2002) Mouse and human dendritic cell subtypes. Nat Rev Immunol 2(3):151–161. doi:10.1038/nri746

    Article  CAS  PubMed  Google Scholar 

  • Sicard H, Ingoure S, Luciani B, Serraz C, Fournie JJ, Bonneville M, Tiollier J, Romagne F (2005) In vivo immunomanipulation of V gamma 9 V delta 2 T cells with a synthetic phosphoantigen in a preclinical nonhuman primate model. J Immunol 175(8):5471–5480

    Article  CAS  PubMed  Google Scholar 

  • Siegal FP, Kadowaki N, Shodell M, Fitzgerald-Bocarsly PA, Shah K, Ho S, Antonenko S, Liu YJ (1999) The nature of the principal type 1 interferon-producing cells in human blood. Science 284(5421):1835–1837

    Article  CAS  PubMed  Google Scholar 

  • Sieweke MH, Allen JE (2013) Beyond stem cells: self-renewal of differentiated macrophages. Science 342(6161):1242974. doi:10.1126/science.1242974

    Article  PubMed  CAS  Google Scholar 

  • Silva BF, Bassetto CC, Amarante AF (2012) Immune responses in sheep naturally infected with Oestrus ovis (Diptera: Oestridae) and gastrointestinal nematodes. Vet Parasitol 190(1–2):120–126. doi:10.1016/j.vetpar.2012.06.004

    Article  CAS  PubMed  Google Scholar 

  • Silverman GJ, Shaw PX, Luo L, Dwyer D, Chang M, Horkko S, Palinski W, Stall A, Witztum JL (2000) Neo-self antigens and the expansion of B-1 cells: lessons from atherosclerosis-prone mice. Curr Top Microbiol Immunol 252:189–200

    CAS  PubMed  Google Scholar 

  • Siracusa MC, Saenz SA, Hill DA, Kim BS, Headley MB, Doering TA, Wherry EJ, Jessup HK, Siegel LA, Kambayashi T, Dudek EC, Kubo M, Cianferoni A, Spergel JM, Ziegler SF, Comeau MR, Artis D (2011) TSLP promotes interleukin-3-independent basophil haematopoiesis and type 2 inflammation. Nature 477(7363):229–233. doi:10.1038/nature10329

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Siracusa MC, Kim BS, Spergel JM, Artis D (2013) Basophils and allergic inflammation. J Allergy Clin Immunol 132(4):789–801 . doi:10.1016/j.jaci.2013.07.046quiz 788

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sisirak V, Faget J, Gobert M, Goutagny N, Vey N, Treilleux I, Renaudineau S, Poyet G, Labidi-Galy SI, Goddard-Leon S, Durand I, Le Mercier I, Bajard A, Bachelot T, Puisieux A, Puisieux I, Blay JY, Menetrier-Caux C, Caux C, Bendriss-Vermare N (2012) Impaired IFN-alpha production by plasmacytoid dendritic cells favors regulatory T-cell expansion that may contribute to breast cancer progression. Cancer Res 72(20):5188–5197. doi:10.1158/0008-5472.CAN-11-3468

    Article  CAS  PubMed  Google Scholar 

  • Sixt M, Kanazawa N, Selg M, Samson T, Roos G, Reinhardt DP, Pabst R, Lutz MB, Sorokin L (2005) The conduit system transports soluble antigens from the afferent lymph to resident dendritic cells in the T cell area of the lymph node. Immunity 22(1):19–29. doi:10.1016/j.immuni.2004.11.013

    Article  CAS  PubMed  Google Scholar 

  • Sleyster EC, Knook DL (1982) Relation between localization and function of rat liver Kupffer cells. Lab Invest 47(5):484–490

    CAS  PubMed  Google Scholar 

  • Slifka MK, Matloubian M, Ahmed R (1995) Bone marrow is a major site of long-term antibody production after acute viral infection. J Virol 69(3):1895–1902

    CAS  PubMed  PubMed Central  Google Scholar 

  • Slifka MK, Antia R, Whitmire JK, Ahmed R (1998) Humoral immunity due to long-lived plasma cells. Immunity 8(3):363–372

    Article  CAS  PubMed  Google Scholar 

  • Smedsrod B, Tollersrud O (1995) Sinusoidal liver endothelial cells recruit lysosomal enzymes from the circulation by mannose-receptor mediated endocytosis. In: Wake K, Wisse E, Knook DL (eds) Cells of the hepatic sinusoid. The Kupffer Cell Foundation, Leiden, pp 180–183

    Google Scholar 

  • Smedsrod B, Johansson S, Pertoft H (1985a) Studies in vivo and in vitro on the uptake and degradation of soluble collagen alpha 1(I) chains in rat liver endothelial and Kupffer cells. Biochem J 228(2):415–424

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Smedsrod B, Pertoft H, Eggertsen G, Sundstrom C (1985b) Functional and morphological characterization of cultures of Kupffer cells and liver endothelial cells prepared by means of density separation in Percoll, and selective substrate adherence. Cell Tissue Res 241(3):639–649

    Article  CAS  PubMed  Google Scholar 

  • Smedsrod B, Melkko J, Risteli L, Risteli J (1990) Circulating C-terminal propeptide of type I procollagen is cleared mainly via the mannose receptor in liver endothelial cells. Biochem J 271(2):345–350

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Smith KG, Light A, Nossal GJ, Tarlinton DM (1997) The extent of affinity maturation differs between the memory and antibody-forming cell compartments in the primary immune response. EMBO J 16(11):2996–3006. doi:10.1093/emboj/16.11.2996

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Snel J, Heinen PP, Blok HJ, Carman RJ, Duncan AJ, Allen PC, Collins MD (1995) Comparison of 16S rRNA sequences of segmented filamentous bacteria isolated from mice, rats, and chickens and proposal of “Candidatus Arthromitus”. Int J Syst Bacteriol 45(4):780–782. doi:10.1099/00207713-45-4-780

    Article  CAS  PubMed  Google Scholar 

  • Soderberg KA, Payne GW, Sato A, Medzhitov R, Segal SS, Iwasaki A (2005) Innate control of adaptive immunity via remodeling of lymph node feed arteriole. Proc Natl Acad Sci U S A 102(45):16315–16320. doi:10.1073/pnas.0506190102

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Soehnlein O, Lindbom L (2010) Phagocyte partnership during the onset and resolution of inflammation. Nat Rev Immunol 10(6):427–439. doi:10.1038/nri2779

    Article  CAS  PubMed  Google Scholar 

  • Soehnlein O, Kai-Larsen Y, Frithiof R, Sorensen OE, Kenne E, Scharffetter-Kochanek K, Eriksson EE, Herwald H, Agerberth B, Lindbom L (2008) Neutrophil primary granule proteins HBP and HNP1-3 boost bacterial phagocytosis by human and murine macrophages. J Clin Invest 118(10):3491–3502. doi:10.1172/JCI35740

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sokol CL, Chu NQ, Yu S, Nish SA, Laufer TM, Medzhitov R (2009) Basophils function as antigen-presenting cells for an allergen-induced T helper type 2 response. Nat Immunol 10(7):713–720. doi:10.1038/ni.1738

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sonoda T, Kanayama Y, Hara H, Hayashi C, Tadokoro M, Yonezawa T, Kitamura Y (1984) Proliferation of peritoneal mast cells in the skin of W/Wv mice that genetically lack mast cells. J Exp Med 160(1):138–151

    Article  CAS  PubMed  Google Scholar 

  • Soucek L, Lawlor ER, Soto D, Shchors K, Swigart LB, Evan GI (2007) Mast cells are required for angiogenesis and macroscopic expansion of Myc-induced pancreatic islet tumors. Nat Med 13(10):1211–1218. doi:10.1038/nm1649

    Article  CAS  PubMed  Google Scholar 

  • Sozzani S, Vermi W, Del Prete A, Facchetti F (2010) Trafficking properties of plasmacytoid dendritic cells in health and disease. Trends Immunol 31(7):270–277. doi:10.1016/j.it.2010.05.004

    Article  CAS  PubMed  Google Scholar 

  • Spencer LA, Szela CT, Perez SA, Kirchhoffer CL, Neves JS, Radke AL, Weller PF (2009) Human eosinophils constitutively express multiple Th1, Th2, and immunoregulatory cytokines that are secreted rapidly and differentially. J Leukoc Biol 85(1):117–123. doi:10.1189/jlb.0108058

    Article  CAS  PubMed  Google Scholar 

  • Spits H, Artis D, Colonna M, Diefenbach A, Di Santo JP, Eberl G, Koyasu S, Locksley RM, McKenzie AN, Mebius RE, Powrie F, Vivier E (2013) Innate lymphoid cells—a proposal for uniform nomenclature. Nat Rev Immunol 13(2):145–149. doi:10.1038/nri3365

    Article  CAS  PubMed  Google Scholar 

  • Stebbings JH Jr (1974) Immediate hypersensitivity: a defense against arthropods? Perspect Biol Med 17(2):233–239

    Article  CAS  PubMed  Google Scholar 

  • Stein T, Morris JS, Davies CR, Weber-Hall SJ, Duffy MA, Heath VJ, Bell AK, Ferrier RK, Sandilands GP, Gusterson BA (2004) Involution of the mouse mammary gland is associated with an immune cascade and an acute-phase response, involving LBP, CD14 and STAT3. Breast Cancer Res 6(2):R75–R91

    Article  CAS  PubMed  Google Scholar 

  • Steinman RM (2000) DC-SIGN: a guide to some mysteries of dendritic cells. Cell 100(5):491–494

    Article  CAS  PubMed  Google Scholar 

  • Stevens RL, Friend DS, McNeil HP, Schiller V, Ghildyal N, Austen KF (1994) Strain-specific and tissue-specific expression of mouse mast cell secretory granule proteases. Proc Natl Acad Sci U S A 91(1):128–132

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Stone KD, Prussin C, Metcalfe DD (2010) IgE, mast cells, basophils, and eosinophils. J Allergy Clin Immunol 125(2 Suppl 2):S73–S80. doi:10.1016/j.jaci.2009.11.017

    Article  PubMed  PubMed Central  Google Scholar 

  • Strid J, Roberts SJ, Filler RB, Lewis JM, Kwong BY, Schpero W, Kaplan DH, Hayday AC, Girardi M (2008) Acute upregulation of an NKG2D ligand promotes rapid reorganization of a local immune compartment with pleiotropic effects on carcinogenesis. Nat Immunol 9(2):146–154. doi:10.1038/ni1556

    Article  CAS  PubMed  Google Scholar 

  • Stroher U, West E, Bugany H, Klenk HD, Schnittler HJ, Feldmann H (2001) Infection and activation of monocytes by Marburg and Ebola viruses. J Virol 75(22):11025–11033. doi:10.1128/JVI.75.22.11025-11033.2001

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Stutman O (1978) Intrathymic and extrathymic T cell maturation. Immunol Rev 42:138–184

    Article  CAS  PubMed  Google Scholar 

  • Sullivan BM, Locksley RM (2009) Basophils: a nonredundant contributor to host immunity. Immunity 30(1):12–20. doi:10.1016/j.immuni.2008.12.006

    Article  CAS  PubMed  Google Scholar 

  • Sullivan BM, Liang HE, Bando JK, Wu D, Cheng LE, McKerrow JK, Allen CD, Locksley RM (2011) Genetic analysis of basophil function in vivo. Nat Immunol 12(6):527–535. doi:10.1038/ni.2036

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Surh CD, Sprent J (1994) T-cell apoptosis detected in situ during positive and negative selection in the thymus. Nature 372(6501):100–103. doi:10.1038/372100a0

    Article  CAS  PubMed  Google Scholar 

  • Suzuki N, Yamamoto K, Toyoshima S, Osawa T, Irimura T (1996) Molecular cloning and expression of cDNA encoding human macrophage C-type lectin. Its unique carbohydrate binding specificity for Tn antigen. J Immunol 156(1):128–135

    CAS  PubMed  Google Scholar 

  • Suzuki K, Meek B, Doi Y, Muramatsu M, Chiba T, Honjo T, Fagarasan S (2004) Aberrant expansion of segmented filamentous bacteria in IgA-deficient gut. Proc Natl Acad Sci U S A 101(7):1981–1986. doi:10.1073/pnas.0307317101

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Takahama Y (2006) Journey through the thymus: stromal guides for T-cell development and selection. Nat Rev Immunol 6(2):127–135. doi:10.1038/nri1781

    Article  CAS  PubMed  Google Scholar 

  • Tal O, Lim HY, Gurevich I, Milo I, Shipony Z, Ng LG, Angeli V, Shakhar G (2011) DC mobilization from the skin requires docking to immobilized CCL21 on lymphatic endothelium and intralymphatic crawling. J Exp Med 208(10):2141–2153. doi:10.1084/jem.20102392

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tamassia N, Le Moigne V, Rossato M, Donini M, McCartney S, Calzetti F, Colonna M, Bazzoni F, Cassatella MA (2008) Activation of an immunoregulatory and antiviral gene expression program in poly(I:C)-transfected human neutrophils. J Immunol 181(9):6563–6573

    Article  CAS  PubMed  Google Scholar 

  • Tamburini BA, Burchill MA, Kedl RM (2014) Antigen capture and archiving by lymphatic endothelial cells following vaccination or viral infection. Nat Commun 5:3989. doi:10.1038/ncomms4989

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tang H, Cao W, Kasturi SP, Ravindran R, Nakaya HI, Kundu K, Murthy N, Kepler TB, Malissen B, Pulendran B (2010) The T helper type 2 response to cysteine proteases requires dendritic cell-basophil cooperation via ROS-mediated signaling. Nat Immunol 11(7):608–617. doi:10.1038/ni.1883

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tateda K, Moore TA, Deng JC, Newstead MW, Zeng X, Matsukawa A, Swanson MS, Yamaguchi K, Standiford TJ (2001) Early recruitment of neutrophils determines subsequent T1/T2 host responses in a murine model of Legionella pneumophila pneumonia. J Immunol 166(5):3355–3361

    Article  CAS  PubMed  Google Scholar 

  • Taylor JJ, Pape KA, Jenkins MK (2012) A germinal center-independent pathway generates unswitched memory B cells early in the primary response. J Exp Med 209(3):597–606. doi:10.1084/jem.20111696

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Templeton AJ, McNamara MG, Seruga B, Vera-Badillo FE, Aneja P, Ocana A, Leibowitz-Amit R, Sonpavde G, Knox JJ, Tran B, Tannock IF, Amir E (2014) Prognostic role of neutrophil-to-lymphocyte ratio in solid tumors: a systematic review and meta-analysis. J Natl Cancer Inst 106(6):dju124. doi:10.1093/jnci/dju124

    Article  PubMed  CAS  Google Scholar 

  • Tew JG, Mandel TE (1979) Prolonged antigen half-life in the lymphoid follicles of specifically immunized mice. Immunology 37(1):69–76

    CAS  PubMed  PubMed Central  Google Scholar 

  • Tew JG, Kosco MH, Burton GF, Szakal AK (1990) Follicular dendritic cells as accessory cells. Immunol Rev 117:185–211

    Article  CAS  PubMed  Google Scholar 

  • Thai TH, Calado DP, Casola S, Ansel KM, Xiao C, Xue Y, Murphy A, Frendewey D, Valenzuela D, Kutok JL, Schmidt-Supprian M, Rajewsky N, Yancopoulos G, Rao A, Rajewsky K (2007) Regulation of the germinal center response by microRNA-155. Science 316(5824):604–608. doi:10.1126/science.1141229

    Article  CAS  PubMed  Google Scholar 

  • Theilacker C, Ludewig K, Serr A, Schimpf J, Held J, Bogelein M, Bahr V, Rusch S, Pohl A, Kogelmann K, Frieseke S, Bogdanski R, FM B, WV K, Splenectomy P, Fulminant Infection Study G (2016) Overwhelming postsplenectomy infection: a prospective multicenter cohort study. Clin Infect Dis 62(7):871–878. doi:10.1093/cid/civ1195

    Article  PubMed  Google Scholar 

  • Thomas EL, Fishman M (1986) Oxidation of chloride and thiocyanate by isolated leukocytes. J Biol Chem 261(21):9694–9702

    CAS  PubMed  Google Scholar 

  • Tilloy F, Treiner E, Park SH, Garcia C, Lemonnier F, de la Salle H, Bendelac A, Bonneville M, Lantz O (1999) An invariant T cell receptor alpha chain defines a novel TAP-independent major histocompatibility complex class Ib-restricted alpha/beta T cell subpopulation in mammals. J Exp Med 189(12):1907–1921

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tokoyoda K, Zehentmeier S, Chang HD, Radbruch A (2009a) Organization and maintenance of immunological memory by stroma niches. Eur J Immunol 39(8):2095–2099. doi:10.1002/eji.200939500

    Article  CAS  PubMed  Google Scholar 

  • Tokoyoda K, Zehentmeier S, Hegazy AN, Albrecht I, Grun JR, Lohning M, Radbruch A (2009b) Professional memory CD4+ T lymphocytes preferentially reside and rest in the bone marrow. Immunity 30(5):721–730. doi:10.1016/j.immuni.2009.03.015

    Article  CAS  PubMed  Google Scholar 

  • Tokoyoda K, Hauser AE, Nakayama T, Radbruch A (2010) Organization of immunological memory by bone marrow stroma. Nat Rev Immunol 10(3):193–200. doi:10.1038/nri2727

    Article  CAS  PubMed  Google Scholar 

  • Tomura M, Yoshida N, Tanaka J, Karasawa S, Miwa Y, Miyawaki A, Kanagawa O (2008) Monitoring cellular movement in vivo with photoconvertible fluorescence protein “Kaede” transgenic mice. Proc Natl Acad Sci U S A 105(31):10871–10876. doi:10.1073/pnas.0802278105

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tonegawa S, Berns A, Bonneville M, Farr A, Ishida I, Ito K, Itohara S, Janeway CA Jr, Kanagawa O, Katsuki M et al (1989) Diversity, development, ligands, and probable functions of gamma delta T cells. Cold Spring Harb Symp Quant Biol 54(Pt 1):31–44

    Article  CAS  PubMed  Google Scholar 

  • Torrero MN, Morris CP, Mitre BK, Hubner MP, Fox EM, Karasuyama H, Mitre E (2013) Basophils help establish protective immunity induced by irradiated larval vaccination for filariasis. Vaccine 31(36):3675–3682. doi:10.1016/j.vaccine.2013.06.010

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Treilleux I, Blay JY, Bendriss-Vermare N, Ray-Coquard I, Bachelot T, Guastalla JP, Bremond A, Goddard S, Pin JJ, Barthelemy-Dubois C, Lebecque S (2004) Dendritic cell infiltration and prognosis of early stage breast cancer. Clin Cancer Res 10(22):7466–7474. doi:10.1158/1078-0432.CCR-04-0684

    Article  CAS  PubMed  Google Scholar 

  • Treiner E, Duban L, Bahram S, Radosavljevic M, Wanner V, Tilloy F, Affaticati P, Gilfillan S, Lantz O (2003) Selection of evolutionarily conserved mucosal-associated invariant T cells by MR1. Nature 422(6928):164–169. doi:10.1038/nature01433

    Article  CAS  PubMed  Google Scholar 

  • Trombetta ES, Ebersold M, Garrett W, Pypaert M, Mellman I (2003) Activation of lysosomal function during dendritic cell maturation. Science 299(5611):1400–1403. doi:10.1126/science.1080106

    Article  CAS  PubMed  Google Scholar 

  • Tsai SH, Takeda K (2016) Regulation of allergic inflammation by the ectoenzyme E-NPP3 (CD203c) on basophils and mast cells. Semin Immunopathol. doi:10.1007/s00281-016-0564-2

    Google Scholar 

  • Tsai M, Grimbaldeston M, Galli SJ (2011) Mast cells and immunoregulation/immunomodulation. Adv Exp Med Biol 716:186–211. doi:10.1007/978-1-4419-9533-9_11

    Article  CAS  PubMed  Google Scholar 

  • Tsutsui H, Nakanishi K, Matsui K, Higashino K, Okamura H, Miyazawa Y, Kaneda K (1996) IFN-gamma-inducing factor up-regulates Fas ligand-mediated cytotoxic activity of murine natural killer cell clones. J Immunol 157(9):3967–3973

    CAS  PubMed  Google Scholar 

  • Tu L, Fang TC, Artis D, Shestova O, Pross SE, Maillard I, Pear WS (2005) Notch signaling is an important regulator of type 2 immunity. J Exp Med 202(8):1037–1042. doi:10.1084/jem.20050923

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ueda Y, Tsuboi M, Ota Y, Makita M, Aoshima T, Nakajima M, Narama I (2011) Gastric mucosal changes induced by polyethylene glycol 400 administered by gavage in rats. J Toxicol Sci 36(6):811–815

    Article  CAS  PubMed  Google Scholar 

  • Ueno T (2004) CCR7 signals are essential for cortex-to-medulla migration of developing thymocytes. J Exp Med 200:493–505

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Umetsu DT, Dekruyff RH (2010) Natural killer T cells are important in the pathogenesis of asthma: the many pathways to asthma. J Allergy Clin Immunol 125(5):975–979. doi:10.1016/j.jaci.2010.02.006

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Urban JF Jr, Noben-Trauth N, Donaldson DD, Madden KB, Morris SC, Collins M, Finkelman FD (1998) IL-13, IL-4Ralpha, and Stat6 are required for the expulsion of the gastrointestinal nematode parasite Nippostrongylus brasiliensis. Immunity 8(2):255–264

    Article  CAS  PubMed  Google Scholar 

  • Urbina C, Ortiz C, Hurtado I (1981) A new look at basophils in mice. Int Arch Allergy Appl Immunol 66(2):158–160

    Article  CAS  PubMed  Google Scholar 

  • Ushiki T, Ohtani O, Abe K (1995) Scanning electron microscopic studies of reticular framework in the rat mesenteric lymph node. Anat Rec 241(1):113–122. doi:10.1002/ar.1092410115

    Article  CAS  PubMed  Google Scholar 

  • Valladeau J, Ravel O, Dezutter-Dambuyant C, Moore K, Kleijmeer M, Liu Y, Duvert-Frances V, Vincent C, Schmitt D, Davoust J, Caux C, Lebecque S, Saeland S (2000) Langerin, a novel C-type lectin specific to Langerhans cells, is an endocytic receptor that induces the formation of Birbeck granules. Immunity 12(1):71–81

    Article  CAS  PubMed  Google Scholar 

  • Valladeau J, Duvert-Frances V, Pin JJ, Kleijmeer MJ, Ait-Yahia S, Ravel O, Vincent C, Vega F Jr, Helms A, Gorman D, Zurawski SM, Zurawski G, Ford J, Saeland S (2001) Immature human dendritic cells express asialoglycoprotein receptor isoforms for efficient receptor-mediated endocytosis. J Immunol 167(10):5767–5774

    Article  CAS  PubMed  Google Scholar 

  • van de Pavert SA, Mebius RE (2010) New insights into the development of lymphoid tissues. Nat Rev Immunol 10(9):664–674. doi:10.1038/nri2832

    Article  PubMed  CAS  Google Scholar 

  • van den Berg TK, van der Ende M, Dopp EA, Kraal G, Dijkstra CD (1993) Localization of beta 1 integrins and their extracellular ligands in human lymphoid tissues. Am J Pathol 143(4):1098–1110

    PubMed  PubMed Central  Google Scholar 

  • van Gisbergen KP, Sanchez-Hernandez M, Geijtenbeek TB, van Kooyk Y (2005) Neutrophils mediate immune modulation of dendritic cells through glycosylation-dependent interactions between Mac-1 and DC-SIGN. J Exp Med 201(8):1281–1292. doi:10.1084/jem.20041276

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Van Kaer L (2005) alpha-Galactosylceramide therapy for autoimmune diseases: prospects and obstacles. Nat Rev Immunol 5(1):31–42. doi:10.1038/nri1531

    Article  CAS  PubMed  Google Scholar 

  • Van Kaer L, Joyce S (2005) Innate immunity: NKT cells in the spotlight. Curr Biol 15(11):R429–R431. doi:10.1016/j.cub.2005.05.032

    Article  CAS  PubMed  Google Scholar 

  • Van Kolen K, Slegers H (2006) Integration of P2Y receptor-activated signal transduction pathways in G protein-dependent signalling networks. Purinergic Signal 2(3):451–469. doi:10.1007/s11302-006-9008-0

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • van Kooyk Y, Geijtenbeek TB (2003) Dendritic cell-SIGN: escape mechanism for pathogens. Nat Rev Immunol 3:697–709

    Article  PubMed  CAS  Google Scholar 

  • van Kooyk Y, Geijtenbeek TB (2002) A novel adhesion pathway that regulates dendritic cell trafficking and T cell interactions. Immunol Rev 186:47–56

    Article  PubMed  Google Scholar 

  • Vance RE, Hong S, Gronert K, Serhan CN, Mekalanos JJ (2004) The opportunistic pathogen Pseudomonas aeruginosa carries a secretable arachidonate 15-lipoxygenase. Proc Natl Acad Sci U S A 101(7):2135–2139. doi:10.1073/pnas.0307308101

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Varol C, Landsman L, Fogg DK, Greenshtein L, Gildor B, Margalit R, Kalchenko V, Geissmann F, Jung S (2007) Monocytes give rise to mucosal, but not splenic, conventional dendritic cells. J Exp Med 204(1):171–180. doi:10.1084/jem.20061011

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Vermijlen D, Luo D, Froelich CJ, Medema JP, Kummer JA, Willems E, Braet F, Wisse E (2002) Hepatic natural killer cells exclusively kill splenic/blood natural killer-resistant tumor cells by the perforin/granzyme pathway. J Leukoc Biol 72(4):668–676

    CAS  PubMed  Google Scholar 

  • Victora GD, Nussenzweig MC (2012) Germinal centers. Annu Rev Immunol 30:429–457. doi:10.1146/annurev-immunol-020711-075032

    Article  CAS  PubMed  Google Scholar 

  • Villadangos JA, Young L (2008) Antigen-presentation properties of plasmacytoid dendritic cells. Immunity 29(3):352–361. doi:10.1016/j.immuni.2008.09.002

    Article  CAS  PubMed  Google Scholar 

  • Vivier E, Ugolini S, Blaise D, Chabannon C, Brossay L (2012) Targeting natural killer cells and natural killer T cells in cancer. Nat Rev Immunol 12(4):239–252. doi:10.1038/nri3174

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Voehringer D (2013) Protective and pathological roles of mast cells and basophils. Nat Rev Immunol 13(5):362–375. doi:10.1038/nri3427

    Article  CAS  PubMed  Google Scholar 

  • Voehringer D, Shinkai K, Locksley RM (2004) Type 2 immunity reflects orchestrated recruitment of cells committed to IL-4 production. Immunity 20(3):267–277

    Article  CAS  PubMed  Google Scholar 

  • von Andrian UH, Mempel TR (2003) Homing and cellular traffic in lymph nodes. Nat Rev Immunol 3(11):867–878. doi:10.1038/nri1222

    Article  CAS  Google Scholar 

  • von Boehmer H, Fehling HJ (1997) Structure and function of the pre-T cell receptor. Annu Rev Immunol 15:433–452

    Article  Google Scholar 

  • von der Weid PY (2001) Review article: lymphatic vessel pumping and inflammation—the role of spontaneous constrictions and underlying electrical pacemaker potentials. Aliment Pharmacol Ther 15(8):1115–1129

    Article  PubMed  Google Scholar 

  • von Freedem-Jeffry U (1995) Lymphopenia in interleukin (IL)-7 gene-deleted mice identifies IL-7 as a nonredundant cytokine. J Exp Med 181:1519–1526

    Article  Google Scholar 

  • Wada T, Ishiwata K, Koseki H, Ishikura T, Ugajin T, Ohnuma N, Obata K, Ishikawa R, Yoshikawa S, Mukai K, Kawano Y, Minegishi Y, Yokozeki H, Watanabe N, Karasuyama H (2010) Selective ablation of basophils in mice reveals their nonredundant role in acquired immunity against ticks. J Clin Invest 120(8):2867–2875. doi:10.1172/JCI42680

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Waghorn DJ (2001) Overwhelming infection in asplenic patients: current best practice preventive measures are not being followed. J Clin Pathol 54(3):214–218

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Walker BE (1961) Mast cell turn-over in adult mice. Nature 192:980–981

    Article  CAS  PubMed  Google Scholar 

  • Wallis VJ, Leuchars E, Chwalinski S, Davies AJ (1975) On the sparse seeding of bone marrow and thymus in radiation chimaeras. Transplantation 19(1):2–11

    Article  CAS  PubMed  Google Scholar 

  • Walzer T, Dalod M, Robbins SH, Zitvogel L, Vivier E (2005) Natural-killer cells and dendritic cells: “l’union fait la force”. Blood 106(7):2252–2258. doi:10.1182/blood-2005-03-1154

    Article  CAS  PubMed  Google Scholar 

  • Wang HB, Ghiran I, Matthaei K, Weller PF (2007) Airway eosinophils: allergic inflammation recruited professional antigen-presenting cells. J Immunol 179(11):7585–7592

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wculek SK, Malanchi I (2015) Neutrophils support lung colonization of metastasis-initiating breast cancer cells. Nature 528(7582):413–417. doi:10.1038/nature16140

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Weber-Arden J, Wilbert OM, Kabelitz D, Arden B (2000) V[delta] repertoire during thymic ontogeny suggests three novel waves of [gamma][delta] TCR expression. J Immunol 164:1002–1012

    Article  CAS  PubMed  Google Scholar 

  • Webster B, Ekland EH, Agle LM, Chyou S, Ruggieri R, Lu TT (2006) Regulation of lymph node vascular growth by dendritic cells. J Exp Med 203(8):1903–1913. doi:10.1084/jem.20052272

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Weinberg ED (1975) Nutritional immunity. Host’s attempt to withold iron from microbial invaders. JAMA 231(1):39–41

    Article  CAS  PubMed  Google Scholar 

  • Weiner HL, da Cunha AP, Quintana F, Wu H (2011) Oral tolerance. Immunol Rev 241(1):241–259. doi:10.1111/j.1600-065X.2011.01017.x

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Welsh RA (1959) The genesis of the Charcot–Leyden crystal in the eosinophilic leukocyte of man. Am J Pathol 35:1091–1103

    CAS  PubMed  PubMed Central  Google Scholar 

  • Wen L, Ley RE, Volchkov PY, Stranges PB, Avanesyan L, Stonebraker AC, Hu C, Wong FS, Szot GL, Bluestone JA, Gordon JI, Chervonsky AV (2008) Innate immunity and intestinal microbiota in the development of Type 1 diabetes. Nature 455(7216):1109–1113. doi:10.1038/nature07336

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wernersson S, Pejler G (2014) Mast cell secretory granules: armed for battle. Nat Rev Immunol 14(7):478–494. doi:10.1038/nri3690

    Article  CAS  PubMed  Google Scholar 

  • Westphalen CB, Asfaha S, Hayakawa Y, Takemoto Y, Lukin DJ, Nuber AH, Brandtner A, Setlik W, Remotti H, Muley A, Chen X, May R, Houchen CW, Fox JG, Gershon MD, Quante M, Wang TC (2014) Long-lived intestinal tuft cells serve as colon cancer-initiating cells. J Clin Invest 124(3):1283–1295. doi:10.1172/JCI73434

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • White A, Carragher D, Parnell S, Msaki A, Perkins N, Lane P, Jenkinson E, Anderson G, Caamano JH (2007) Lymphotoxin a-dependent and -independent signals regulate stromal organizer cell homeostasis during lymph node organogenesis. Blood 110(6):1950–1959. doi:10.1182/blood-2007-01-070003

    Article  CAS  PubMed  Google Scholar 

  • Wilhelm M, Kunzmann V, Eckstein S, Reimer P, Weissinger F, Ruediger T, Tony HP (2003) Gammadelta T cells for immune therapy of patients with lymphoid malignancies. Blood 102(1):200–206. doi:10.1182/blood-2002-12-3665

    Article  CAS  PubMed  Google Scholar 

  • Willard-Mack CL (2006) Normal structure, function, and histology of lymph nodes. Toxicol Pathol 34(5):409–424

    Article  PubMed  Google Scholar 

  • Willment JA, Gordon S, Brown GD (2001) Characterization of the human beta -glucan receptor and its alternatively spliced isoforms. J Biol Chem 276(47):43818–43823. doi:10.1074/jbc.M107715200

    Article  CAS  PubMed  Google Scholar 

  • Wilson CL, Ouellette AJ, Satchell DP, Ayabe T, Lopez-Boado YS, Stratman JL, Hultgren SJ, Matrisian LM, Parks WC (1999) Regulation of intestinal alpha-defensin activation by the metalloproteinase matrilysin in innate host defense. Science 286(5437):113–117

    Article  CAS  PubMed  Google Scholar 

  • Winkler IG, Sims NA, Pettit AR, Barbier V, Nowlan B, Helwani F, Poulton IJ, van Rooijen N, Alexander KA, Raggatt LJ, Levesque JP (2010) Bone marrow macrophages maintain hematopoietic stem cell (HSC) niches and their depletion mobilizes HSCs. Blood 116(23):4815–4828. doi:10.1182/blood-2009-11-253534

    Article  CAS  PubMed  Google Scholar 

  • Winter DR, Amit I (2014) The role of chromatin dynamics in immune cell development. Immunol Rev 261(1):9–22. doi:10.1111/imr.12200

    Article  CAS  PubMed  Google Scholar 

  • Winter O, Mohr E, Manz RA (2011) Alternative cell types form a Multi-Component-Plasma-Cell-Niche. Immunol Lett 141(1):145–146. doi:10.1016/j.imlet.2011.07.006

    Article  CAS  PubMed  Google Scholar 

  • Winterbourn CC, Hampton MB, Livesey JH, Kettle AJ (2006) Modeling the reactions of superoxide and myeloperoxidase in the neutrophil phagosome: implications for microbial killing. J Biol Chem 281(52):39860–39869. doi:10.1074/jbc.M605898200

    Article  CAS  PubMed  Google Scholar 

  • Wisniewski JR, Hein MY, Cox J, Mann M (2014) A “proteomic ruler” for protein copy number and concentration estimation without spike-in standards. Mol Cell Proteomics 13(12):3497–3506. doi:10.1074/mcp.M113.037309

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wisse E, Luo D, Vermijlen D, Kanellopoulou C, De Zanger R, Braet F (1997) On the function of pit cells, the liver-specific natural killer cells. Semin Liver Dis 17(4):265–286

    Article  CAS  PubMed  Google Scholar 

  • Wong J, Johnston B, Lee SS, Bullard DC, Smith CW, Beaudet AL, Kubes P (1997) A minimal role for selectins in the recruitment of leukocytes into the inflamed liver microvasculature. J Clin Invest 99(11):2782–2790

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wong CK, Ng SS, Lun SW, Cao J, Lam CW (2009) Signalling mechanisms regulating the activation of human eosinophils by mast-cell-derived chymase: implications for mast cell-eosinophil interaction in allergic inflammation. Immunology 126(4):579–587. doi:10.1111/j.1365-2567.2008.02916.x

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Woodbury RG, Miller HR (1982) Quantitative analysis of mucosal mast cell protease in the intestines of Nippostrongylus-infected rats. Immunology 46(3):487–495

    CAS  PubMed  PubMed Central  Google Scholar 

  • Woodbury RG, Gruzenski GM, Lagunoff D (1978) Immunofluorescent localization of a serine protease in rat small intestine. Proc Natl Acad Sci U S A 75(6):2785–2789

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wu Y, El Shikh ME, El Sayed RM, Best AM, Szakal AK, Tew JG (2009) IL-6 produced by immune complex-activated follicular dendritic cells promotes germinal center reactions, IgG responses and somatic hypermutation. Int Immunol 21(6):745–756. doi:10.1093/intimm/dxp041

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wu GZ, Pan CX, Jiang D, Zhang Q, Li Y, Zheng SY (2015) Clinicopathological significance of Fas and Fas ligand expressions in esophageal cancer. Am J Cancer Res 5(9):2865–2871

    PubMed  PubMed Central  Google Scholar 

  • Wynn TA, Chawla A, Pollard JW (2013) Macrophage biology in development, homeostasis and disease. Nature 496(7446):445–455. doi:10.1038/nature12034

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Xiang Z, Block M, Lofman C, Nilsson G (2001) IgE-mediated mast cell degranulation and recovery monitored by time-lapse photography. J Allergy Clin Immunol 108(1):116–121. doi:10.1067/mai.2001.116124

    Article  CAS  PubMed  Google Scholar 

  • Yang X, Stennicke HR, Wang B, Green DR, Janicke RU, Srinivasan A, Seth P, Salvesen GS, Froelich CJ (1998) Granzyme B mimics apical caspases. Description of a unified pathway for trans-activation of executioner caspase-3 and -7. J Biol Chem 273(51):34278–34283

    Article  CAS  PubMed  Google Scholar 

  • Yang CY, Vogt TK, Favre S, Scarpellino L, Huang HY, Tacchini-Cottier F, Luther SA (2014) Trapping of naive lymphocytes triggers rapid growth and remodeling of the fibroblast network in reactive murine lymph nodes. Proc Natl Acad Sci U S A 111:E109–E118. doi:10.1073/pnas.1312585111

    Article  CAS  PubMed  Google Scholar 

  • Ying S, Kikuchi Y, Meng Q, Kay AB, Kaplan AP (2002) TH1/TH2 cytokines and inflammatory cells in skin biopsy specimens from patients with chronic idiopathic urticaria: comparison with the allergen-induced late-phase cutaneous reaction. J Allergy Clin Immunol 109(4):694–700

    Article  CAS  PubMed  Google Scholar 

  • Yipp BG, Petri B, Salina D, Jenne CN, Scott BN, Zbytnuik LD, Pittman K, Asaduzzaman M, Wu K, Meijndert HC, Malawista SE, de Boisfleury CA, Zhang K, Conly J, Kubes P (2012) Infection-induced NETosis is a dynamic process involving neutrophil multitasking in vivo. Nat Med 18(9):1386–1393. doi:10.1038/nm.2847

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Yona S, Kim KW, Wolf Y, Mildner A, Varol D, Breker M, Strauss-Ayali D, Viukov S, Guilliams M, Misharin A, Hume DA, Perlman H, Malissen B, Zelzer E, Jung S (2013) Fate mapping reveals origins and dynamics of monocytes and tissue macrophages under homeostasis. Immunity 38(1):79–91. doi:10.1016/j.immuni.2012.12.001

    Article  CAS  PubMed  Google Scholar 

  • Yoshida H, Naito A, Inoue J, Satoh M, Santee-Cooper SM, Ware CF, Togawa A, Nishikawa S, Nishikawa S (2002) Different cytokines induce surface lymphotoxin-alphabeta on IL-7 receptor-alpha cells that differentially engender lymph nodes and Peyer’s patches. Immunity 17(6):823–833

    Article  CAS  PubMed  Google Scholar 

  • Yoshida T, Mei H, Dorner T, Hiepe F, Radbruch A, Fillatreau S, Hoyer BF (2010) Memory B and memory plasma cells. Immunol Rev 237(1):117–139. doi:10.1111/j.1600-065X.2010.00938.x

    Article  CAS  PubMed  Google Scholar 

  • Yoshimoto T, Yasuda K, Tanaka H, Nakahira M, Imai Y, Fujimori Y, Nakanishi K (2009) Basophils contribute to T(H)2-IgE responses in vivo via IL-4 production and presentation of peptide-MHC class II complexes to CD4+ T cells. Nat Immunol 10(7):706–712. doi:10.1038/ni.1737

    Article  CAS  PubMed  Google Scholar 

  • Yost CC, Cody MJ, Harris ES, Thornton NL, McInturff AM, Martinez ML, Chandler NB, Rodesch CK, Albertine KH, Petti CA, Weyrich AS, Zimmerman GA (2009) Impaired neutrophil extracellular trap (NET) formation: a novel innate immune deficiency of human neonates. Blood 113(25):6419–6427

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Yousefi S, Mihalache C, Kozlowski E, Schmid I, Simon HU (2009) Viable neutrophils release mitochondrial DNA to form neutrophil extracellular traps. Cell Death Differ 16(11):1438–1444. doi:10.1038/cdd.2009.96

    Article  CAS  PubMed  Google Scholar 

  • Yuan JS, Kousis PC, Suliman S, Visan I, Guidos CJ (2010) Functions of notch signaling in the immune system: consensus and controversies. Annu Rev Immunol 28:343–365. doi:10.1146/annurev.immunol.021908.132719

    Article  PubMed  CAS  Google Scholar 

  • Zasloff M (2002) Antimicrobial peptides of multicellular organisms. Nature 415(6870):389–395. doi:10.1038/415389a

    Article  CAS  PubMed  Google Scholar 

  • Zeng M, Smith AJ, Wietgrefe SW, Southern PJ, Schacker TW, Reilly CS, Estes JD, Burton GF, Silvestri G, Lifson JD, Carlis JV, Haase AT (2011) Cumulative mechanisms of lymphoid tissue fibrosis and T cell depletion in HIV-1 and SIV infections. J Clin Invest 121(3):998–1008. doi:10.1172/JCI45157

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zhang Q, Raoof M, Chen Y, Sumi Y, Sursal T, Junger W, Brohi K, Itagaki K, Hauser CJ (2010) Circulating mitochondrial DAMPs cause inflammatory responses to injury. Nature 464(7285):104–107. doi:10.1038/nature08780

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Zheng Y, Valdez PA, Danilenko DM, Hu Y, Sa SM, Gong Q, Abbas AR, Modrusan Z, Ghilardi N, de Sauvage FJ, Ouyang W (2008) Interleukin-22 mediates early host defense against attaching and effacing bacterial pathogens. Nat Med 14(3):282–289. doi:10.1038/nm1720

    Article  CAS  PubMed  Google Scholar 

  • Zigmond E, Jung S (2013) Intestinal macrophages: well educated exceptions from the rule. Trends Immunol 34(4):162–168. doi:10.1016/j.it.2013.02.001

    Article  CAS  PubMed  Google Scholar 

  • Zinkernagel RM (1978) On the thymus in the differentiation of “H-2 self-recognition” by T cells: evidence for dual recognition? J Exp Med 147:882–896

    Article  CAS  PubMed  Google Scholar 

  • Zuklys S (2000) Normal thymic architecture and negative selection are associated with Aire expression, the gene defective in the autoimmune-polyendocrinopathy-candidiasis-ectodermal dystrophy (APECED). J Immunol 165:1976–1983

    Article  CAS  PubMed  Google Scholar 

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Preparation of figures by Cynthia Swanson, M.S. is gratefully acknowledged.

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Parker, G.A. (2017). Cells of the Immune System. In: Parker, G. (eds) Immunopathology in Toxicology and Drug Development. Molecular and Integrative Toxicology. Humana Press, Cham. https://doi.org/10.1007/978-3-319-47377-2_2

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