Skip to main content

HIST: HyperIntensity Segmentation Tool

  • Conference paper
  • First Online:

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 9993))

Abstract

Accurate quantification of white matter hyperintensities (WMH) from MRI is a valuable tool for studies on ageing and neurodegeneration. Reliable automatic extraction of WMH biomarkers is challenging, primarily due to their heterogeneous spatial occurrence, their small size and their diffuse nature. In this paper, we present an automatic and accurate method to segment these lesions that is based on the use of neural networks and an overcomplete strategy. The proposed method was compared to other related methods showing competitive and reliable results in two different neurodegenerative datasets.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

References

  1. Debette, S., Markus, H.S.: The clinical importance of white matter hyperintensities on brain magnetic resonance imaging: systematic review and meta-analysis. BMJ 341, c3666 (2010)

    Article  Google Scholar 

  2. Filippi, M., Rocca, M.A.: MR imaging of multiple sclerosis. Radiology 259, 659–681 (2011)

    Article  Google Scholar 

  3. Schmidt, P., Gaser, C., Arsic, M., Buck, D., Förschler, A., Berthele, A., Hoshi, M., Ilg, R., Schmid, V.J., Zimmer, C., Hemmer, B., Mühlau, M.: An automated tool for detection of FLAIR-hyperintense white-matter lesions in Multiple Sclerosis. NeuroImage 59, 3774–3783 (2012)

    Article  Google Scholar 

  4. Weiss, N., Rueckert, D., Rao, A.: Multiple sclerosis lesion segmentation using dictionary learning and sparse coding. Med. Image Comput. Comput. Assist. Interv. 16, 735–742 (2013)

    Google Scholar 

  5. Admiraal-Behloul, F., et al.: Fully automatic segmentation of white matter hyperintensities in MR images of the elderly. NeuroImage 28, 607–617 (2005)

    Article  Google Scholar 

  6. Jack, C.R., O’Brien, P.C., Rettman, D.W., Shiung, M.M., Xu, Y., Muthupillai, R., Manduca, A., Avula, R., Erickson, B.J.: FLAIR histogram segmentation for measurement of leukoaraiosis volume. J. Magn. Reson. Imaging 14, 668–676 (2001)

    Article  Google Scholar 

  7. Ithapu, V., Singh, V., Lindner, C., Austin, B.P., Hinrichs, C., Carlsson, C.M., Bendlin, B.B., Johnson, S.C.: Extracting and summarizing white matter hyperintensities using supervised segmentation methods in Alzheimer’s disease risk and aging studies. Hum. Brain Mapp. 35, 4219–4235 (2014)

    Google Scholar 

  8. Dyrby, T.B., et al.: Segmentation of age-related white matter changes in a clinical multi-center study. NeuroImage 41, 335–345 (2008)

    Article  Google Scholar 

  9. Guizard, N., Coupé, P., Fonov, V., Manjón, J.V., Douglas, A., Collins, D.L.: Rotation-invariant multi-contrast non-local means for MS lesion segmentation. NeuroImage Clin. 8, 376–389 (2015)

    Article  Google Scholar 

  10. Manjón, J.V., Coupé, P., Martí-Bonmatí, L., Collins, D.L., Robles, M.: Adaptive non-local means denoising of MR images with spatially varying noise levels. J. Magn. Reson. Imaging 31, 192–203 (2010)

    Article  Google Scholar 

  11. Avants, B., Tustison, N., Song, G.: Advanced Normalization Tools: V1.0 (2009)

    Google Scholar 

  12. Ashburner, J., Friston, K.J.: Unified segmentation. NeuroImage 26, 839–851 (2005)

    Article  Google Scholar 

  13. Ellis, K.A., et al.: The Australian Imaging, Biomarkers and Lifestyle (AIBL) study of aging: methodology and baseline characteristics of 1112 individuals recruited for a longitudinal study of Alzheimer’s disease. Int. Psychogeriatr. 21, 1–16 (2009)

    Article  Google Scholar 

  14. Styner, M., Lee, J., Chin, B., Chin, M.S., Commowick, O., Tran, H.-H., Markovic-Plese, S., Jewells, V., Warfield, S.: 3D segmentation in the clinic: a grand challenge II: MS lesion segmentation (2008)

    Google Scholar 

Download references

Acknowledgements

This research has been done thanks to the Australian distinguished visiting professor grant and the Spanish “Programa de apoyo a la investigación y desarrollo (PAID-00-15)” of the Universidad Politécnica de Valencia. This study has been carried out with support from the French State, managed by the French National Research Agency in the frame of the Investments for the future Program IdEx Bordeaux (ANR-10-IDEX-03-02, HL-MRI Project), Cluster of excellence CPU and TRAIL (HR-DTI ANR-10-LABX-57) and the CNRS multidisciplinary project “Défi imag’In”.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Pierrick Coupé .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2016 Springer International Publishing AG

About this paper

Cite this paper

Manjón, J.V., Coupé, P., Raniga, P., Xia, Y., Fripp, J., Salvado, O. (2016). HIST: HyperIntensity Segmentation Tool. In: Wu, G., Coupé, P., Zhan, Y., Munsell, B., Rueckert, D. (eds) Patch-Based Techniques in Medical Imaging. Patch-MI 2016. Lecture Notes in Computer Science(), vol 9993. Springer, Cham. https://doi.org/10.1007/978-3-319-47118-1_12

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-47118-1_12

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-47117-4

  • Online ISBN: 978-3-319-47118-1

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics