Skip to main content

Hyperalignment of Multi-subject fMRI Data by Synchronized Projections

  • Conference paper
  • First Online:
Machine Learning and Interpretation in Neuroimaging (MLINI 2013, MLINI 2014)

Abstract

Group analysis of fMRI data via multivariate pattern methods requires accurate alignments between neuronal activities of different subjects in order to attain competitive inter-subject classification rates. Hyperalignment, a recent technique pioneered by Haxby and collaborators, aligns the activations of different subjects by mapping them into a common abstract high-dimensional space. While hyperalignment is very successful in terms of classification performance, its “anatomy free” nature excludes the use of potentially helpful information inherent in anatomy. In this paper, we present a novel approach to hyperalignment that allows incorporating anatomical information in a non-trivial way. Experiments demonstrate the effectiveness of our approach over the original hyperalignment and several other natural alternatives.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 34.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 44.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. PyMVPA User Manual: Hyperalignment for Between-Subject Analysis. http://dev.pymvpa.org/examples/hyperalignment.html

  2. Chang, C.C., Lin, C.J.: LIBSVM: a library for support vector machines. ACM Trans. Intell. Syst. Technol. 2, 27:1–27:27 (2011). http://www.csie.ntu.edu.tw/ cjlin/libsvm

    Article  Google Scholar 

  3. Churchland, P.M.: Conceptual similarity across sensory and neural diversity: the Fodor/Lepore challenge answered. J. Philos. 95(1), 5–32 (1998)

    Google Scholar 

  4. Conroy, B.R., Singer, B., Haxby, J.V., Ramadge, P.J.: fMRI-based inter-subject cortical alignment using functional connectivity. In: NIPS, pp. 378–386 (2009)

    Google Scholar 

  5. Conroy, B.R., Singer, B.D., Guntupalli, J.S., Ramadge, P.J., Haxby, J.V.: Inter-subject alignment of human cortical anatomy using functional connectivity. NeuroImage 81, 400–411 (2013)

    Article  Google Scholar 

  6. Fischl, B., Sereno, M.I., Tootell, R.B., Dale, A.M.: High-resolution intersubject averaging and a coordinate system for the cortical surface. Hum. Brain Mapp. 8(4), 272–284 (1999)

    Article  Google Scholar 

  7. Haxby, J.V., Guntupalli, J.S., Connolly, A.C., Halchenko, Y.O., Conroy, B.R., Gobbini, M.I., Hanke, M., Ramadge, P.J.: A common, high-dimensional model of the representational space in human ventral temporal cortex. Neuron 72(2), 404–416 (2011)

    Google Scholar 

  8. Lorbert, A., Ramadge, P.J.: Kernel hyperalignment. In: NIPS, pp. 1799–1807 (2012)

    Google Scholar 

  9. Sabuncu, M.R., Singer, B.D., Conroy, B., Bryan, R.E., Ramadge, P.J., Haxby, J.V.: Function-based intersubject alignment of human cortical anatomy. Cereb. Cortex 20(1), 130–140 (2010)

    Article  Google Scholar 

  10. Singer, A.: Angular synchronization by eigenvectors and semidefinite programming. Appl. Comput. Harmon. Anal. 30(1), 20–36 (2011)

    Article  MathSciNet  MATH  Google Scholar 

  11. Singer, A., Wu, H.T.: Vector diffusion maps and the connection Laplacian. Comm. Pure Appl. Math. 65(8), 1067–1144 (2012)

    Article  MathSciNet  MATH  Google Scholar 

  12. Talairach, J., Tournoux, P.: Co-planar Stereotaxic Atlas of the Human Brain: 3-D Proportional System: An Approach to Cerebral Imaging. Thieme, Stuttgart (1988)

    Google Scholar 

  13. Wang, F., Huang, Q., Guibas, L.: Image co-segmentation via consistent functional maps. In: Proceedings of the International Conference on Computer Vision (ICCV) (2013)

    Google Scholar 

  14. Xu, H., Lorbert, A., Ramadge, P., Guntupalli, J., Haxby, J.: Regularized hyperalignment of multi-set fmri data. In: IEEE Statistical Signal Processing Workshop, pp. 229–232 (2012)

    Google Scholar 

Download references

Acknowledgments

The authors acknowledge the support of NSF grants FODAVA 808515 and DMS 1228304, AFOSR grant FA9550-12-1-0372, ONR grant N00014-13-1-0341, a Google research award, and the Max Plack Center for Visual Computing and Communications.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Raif M. Rustamov .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2016 Springer International Publishing AG

About this paper

Cite this paper

Rustamov, R.M., Guibas, L. (2016). Hyperalignment of Multi-subject fMRI Data by Synchronized Projections. In: Rish, I., Langs, G., Wehbe, L., Cecchi, G., Chang, Km., Murphy, B. (eds) Machine Learning and Interpretation in Neuroimaging. MLINI MLINI 2013 2014. Lecture Notes in Computer Science(), vol 9444. Springer, Cham. https://doi.org/10.1007/978-3-319-45174-9_12

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-45174-9_12

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-45173-2

  • Online ISBN: 978-3-319-45174-9

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics