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DSJM: A Software Toolkit for Direct Determination of Sparse Jacobian Matrices

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Mathematical Software – ICMS 2016 (ICMS 2016)

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Abstract

We describe the main design features of DSJM (Determine Sparse Jacobian Matrices), a software toolkit written in standard C++ that enables direct determination of sparse Jacobian matrices. Our design exploits the recently proposed unifying framework “pattern graph” and employs cache-friendly array-based sparse data structures. The DSJM implements a greedy grouping (coloring) algorithm and several ordering heuristics. In our numerical testing on a suite of large-scale test instances DSJM consistently produced better timing and partitions compared with a similar software.

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References

  1. Coleman, T.F., Moré, J.J.: Estimation of sparse Jacobian matrices and graph coloring problems. SIAM J. Numer. Anal. 20(1), 187–209 (1983)

    Article  MathSciNet  MATH  Google Scholar 

  2. Coleman, T.F., Verma, A.: The efficient computation of sparse Jacobian matrices using automatic differentiation. SIAM J. Sci. Comput. 19(4), 1210–1233 (1998)

    Article  MathSciNet  MATH  Google Scholar 

  3. Curtis, A.R., Powell, M.J.D., Reid, J.K.: On the estimation of sparse Jacobian matrices. J. Inst. Math. Appl. 13, 117–119 (1974)

    Article  MATH  Google Scholar 

  4. Davis, T.A.: Direct Methods for Sparse Linear Systems (Fundamentals of Algorithms 2). Society for Industrial and Applied Mathematics, Philadelphia, PA, USA (2006)

    Book  Google Scholar 

  5. Duff, I.S., Grimes, R.G., Lewis, J.G.: Sparse matrix test problems. ACM Trans. Math. Softw. 15(1), 1–14 (1989)

    Article  MathSciNet  MATH  Google Scholar 

  6. Gebremedhin, A.H., Manne, F., Pothen, A.: What color is your jacobian? graph coloring for computing derivatives. SIAM Rev. 47(4), 629–705 (2005)

    Article  MathSciNet  MATH  Google Scholar 

  7. Gebremedhin, A.H., Nguyen, D., Patwary, M.M.A., Pothen, A.: ColPack: Software for graph coloring and related problems in scientific computing. ACM Trans. Math. Softw. 40(1), 1–31 (2013)

    Article  MathSciNet  MATH  Google Scholar 

  8. Gilbert, J.R., Moler, C., Schreiber, R.: Sparse matrices in matlab: design and implementation. SIAM J. Matrix Anal. Appl. 13(1), 333–356 (1992)

    Article  MathSciNet  MATH  Google Scholar 

  9. Griewank, A., Walther, A.: Evaluating Derivatives: Principles and Techniques of AlgorithmicDifferentiation, 2nd edn. Society for Industrial and Applied Mathematics, Philadelphia, PA, USA (2008)

    Book  MATH  Google Scholar 

  10. Griewank, A., Mitev, C.: Detecting Jacobian sparsity patterns by Bayesian probing. Math. Prog. 93(1), 1–25 (2002)

    Article  MathSciNet  MATH  Google Scholar 

  11. Hossain, A.S., Steihaug, T.: Computing a sparse Jacobian matrix by rows and columns. Optim. Methods Softw. 10, 33–48 (1998)

    Article  MathSciNet  MATH  Google Scholar 

  12. Hossain, S., Steihaug, T.: Graph coloring in the estimation of sparse derivative matrices: Instances and applications. Discrete Appl. Math. 156(2), 280–288 (2008)

    Article  MathSciNet  MATH  Google Scholar 

  13. Hossain, S., Steihaug, T.: Graph models and their efficient implementation for sparse jacobian matrix determination. Discrete Appl. Math. 161(12), 1747–1754 (2013)

    Article  MathSciNet  MATH  Google Scholar 

  14. Newsam, G.N., Ramsdell, J.D.: Estimation of sparse Jacobian matrices. SIAM J. Alg. Disc. Meth. 4(3), 404–417 (1983)

    Article  MathSciNet  MATH  Google Scholar 

  15. Park, J.-S., Penner, M., Prasanna, V.K.: Optimizing graph algorithms for improved cache performance. IEEE Trans. Parallel Distrib. Syst. 15(9), 769–782 (2004)

    Article  Google Scholar 

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Acknowledgements

This research was supported in part by Natural Sciences and Engineering Research Council of Canada (NSERC) Discovery Grant (Individual).

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Correspondence to Shahadat Hossain .

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Hasan, M., Hossain, S., Khan, A.I., Mithila, N.H., Suny, A.H. (2016). DSJM: A Software Toolkit for Direct Determination of Sparse Jacobian Matrices. In: Greuel, GM., Koch, T., Paule, P., Sommese, A. (eds) Mathematical Software – ICMS 2016. ICMS 2016. Lecture Notes in Computer Science(), vol 9725. Springer, Cham. https://doi.org/10.1007/978-3-319-42432-3_34

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  • DOI: https://doi.org/10.1007/978-3-319-42432-3_34

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-42431-6

  • Online ISBN: 978-3-319-42432-3

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