Abstract
The trans-envelope drug efflux in Gram-negative bacteria demands assembly of specialized protein complexes that in addition to inner membrane transporters include periplasmic membrane fusion proteins and outer membrane channels due to the presence of a double membrane. These complexes are highly versatile and constitute a major antimicrobial resistance mechanism of Gram-negative bacteria. The modular organization of the tripartite assemblies in Gram-negative bacteria allows them to accommodate a wide array of multidrug efflux transporters enabling efflux across both the inner and the outer membranes of the cell envelope. This chapter focuses on the structures and mechanisms of trans-envelope multidrug efflux pumps from Gram-negative bacteria. We summarize the current state of the field and the emerging model for multidrug efflux in the context of two membranes.
This is a preview of subscription content, log in via an institution.
Buying options
Tax calculation will be finalised at checkout
Purchases are for personal use only
Learn about institutional subscriptionsReferences
Saier MH Jr, Paulsen IT (2001) Phylogeny of multidrug transporters. Semin Cell Dev Biol 12:205–213. doi:10.1006/scdb.2000.0246
Higgins CF, Linton KJ (2004) The ATP switch model for ABC transporters. Nat Struct Mol Biol 11:918–926. doi:10.1038/nsmb836
Saier MH Jr, Beatty JT, Goffeau A, Harley KT, Heijne WH, Huang SC, Jack DL, Jahn PS et al (1999) The major facilitator superfamily. J Mol Microbiol Biotechnol 1:257–279
Tseng SP, Tsai WC, Liang CY, Lin YS, Huang JW, Chang CY, Tyan YC, Lu PL (2014) The contribution of antibiotic resistance mechanisms in clinical Burkholderia cepacia complex isolates: an emphasis on efflux pump activity. PLoS One 9:e104986. doi:10.1371/journal.pone.0104986
Chung YJ, Saier MH Jr (2001) SMR-type multidrug resistance pumps. Curr Opin Drug Discov Devel 4:237–245
Hvorup RN, Winnen B, Chang AB, Jiang Y, Zhou XF, Saier MH Jr (2003) The multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) exporter superfamily. Eur J Biochem 270:799–813. doi:10.1046/j.1432-1033.2003.03418.x
Hassan KA, Jackson SM, Penesyan A, Patching SG, Tetu SG, Eijkelkamp BA, Brown MH, Henderson PJ et al (2013) Transcriptomic and biochemical analyses identify a family of chlorhexidine efflux proteins. Proc Natl Acad Sci U S A 110:20254–20259. doi:10.1073/pnas.1317052110
Paulsen IT, Nguyen L, Sliwinski MK, Rabus R, Saier MH Jr (2000) Microbial genome analyses: comparative transport capabilities in eighteen prokaryotes. J Mol Biol 301:75–100. doi:10.1006/jmbi.2000.3961
Paulsen IT, Brown MH, Skurray RA (1998) Characterization of the earliest known Staphylococcus aureus plasmid encoding a multidrug efflux system. J Bacteriol 180:3477–3479
Zgurskaya HI, Weeks JW, Ntreh AT, Nickels LM, Wolloscheck D (2015) Mechanism of coupling drug transport reactions located in two different membranes. Front Microbiol 6:100. doi:10.3389/fmicb.2015.00100
Davidson AL, Dassa E, Orelle C, Chen J (2008) Structure, function, and evolution of bacterial ATP-binding cassette systems. Microbiol Mol Biol Rev 72:317–364. doi:10.1128/MMBR.00031-07
Fluman N, Bibi E (2009) Bacterial multidrug transport through the lens of the major facilitator superfamily. Biochim Biophys Acta 1794:738–747. doi:10.1016/j.bbapap.2008.11.020
Eicher T, Seeger MA, Anselmi C, Zhou W, Brandstatter L, Verrey F, Diederichs K, Faraldo-Gomez JD, et al (2014) Coupling of remote alternating-access transport mechanisms for protons and substrates in the multidrug efflux pump AcrB. eLife 3:doi: 10.7554/eLife.03145
Smirnova I, Kasho V, Kaback HR (2011) Lactose permease and the alternating access mechanism. Biochemistry 50:9684–9693. doi:10.1021/bi2014294
Fluman N, Ryan CM, Whitelegge JP, Bibi E (2012) Dissection of mechanistic principles of a secondary multidrug efflux protein. Mol Cell 47:777–787. doi:10.1016/j.molcel.2012.06.018
Nikaido H, Pagès JM (2012) Broad-specificity efflux pumps and their role in multidrug resistance of Gram-negative bacteria. FEMS Microbiol Rev 36:340–363. doi:10.1111/j.1574-6976.2011.00290.x
Su CC, Long F, Zimmermann MT, Rajashankar KR, Jernigan RL, Yu EW (2011) Crystal structure of the CusBA heavy-metal efflux complex of Escherichia coli. Nature 470:558–562. doi:10.1038/nature09743
Su CC, Long F, Lei HT, Bolla JR, Do SV, Rajashankar KR, Yu EW (2012) Charged amino acids (R83, E567, D617, E625, R669, and K678) of CusA are required for metal ion transport in the Cus efflux system. J Mol Biol 422:429–441. doi:10.1016/j.jmb.2012.05.038
Tornroth-Horsefield S, Gourdon P, Horsefield R, Brive L, Yamamoto N, Mori H, Snijder A, Neutze R (2007) Crystal structure of AcrB in complex with a single transmembrane subunit reveals another twist. Structure 15:1663–1673. doi:10.1016/j.str.2007.09.023
Hobbs EC, Yin X, Paul BJ, Astarita JL, Storz G (2012) Conserved small protein associates with the multidrug efflux pump AcrB and differentially affects antibiotic resistance. Proc Natl Acad Sci U S A 109:16696–16701. doi:10.1073/pnas.1210093109
Du D, Wang Z, James NR, Voss JE, Klimont E, Ohene-Agyei T, Venter H, Chiu W et al (2014) Structure of the AcrAB-TolC multidrug efflux pump. Nature 509:512–515. doi:10.1038/nature13205
Zgurskaya HI, Krishnamoorthy G, Ntreh A, Lu S (2011) Mechanism and function of the outer membrane channel TolC in multidrug resistance and physiology of enterobacteria. Front Microbiol 2:189. doi:10.3389/fmicb.2011.00189
Morona R, Reeves P (1981) Molecular cloning of the tolC locus of Escherichia coli K-12 with the use of transposon Tn10. Mol Gen Genet 184:430–433. doi:10.1007/BF00352517
Morona R, Reeves P (1982) The tolC locus of Escherichia coli affects the expression of three major outer membrane proteins. J Bacteriol 150:1016–1023
Morona R, Manning PA, Reeves P (1983) Identification and characterization of the TolC protein, an outer membrane protein from Escherichia coli. J Bacteriol 153:693–699
Benz R, Maier E, Gentschev I (1993) TolC of Escherichia coli functions as an outer membrane channel. Zentralbl Bakteriol 278:187–196. doi:10.1016/S0934-8840(11)80836-4
Fralick JA (1996) Evidence that TolC is required for functioning of the Mar/AcrAB efflux pump of Escherichia coli. J Bacteriol 178:5803–5805
Ma D, Cook DN, Alberti M, Pon NG, Nikaido H, Hearst JE (1993) Molecular cloning and characterization of acrA and acrE genes of Escherichia coli. J Bacteriol 175:6299–6313
Nishino K, Yamaguchi A (2001) Analysis of a complete library of putative drug transporter genes in Escherichia coli. J Bacteriol 183:5803–5812. doi:10.1128/JB.183.20.5803-5812.2001
Gilson L, Mahanty HK, Kolter R (1990) Genetic analysis of an MDR-like export system: the secretion of colicin V. EMBO J 9:3875–3884
Delgado MA, Solbiati JO, Chiuchiolo MJ, Farias RN, Salomon RA (1999) Escherichia coli outer membrane protein TolC is involved in production of the peptide antibiotic microcin J25. J Bacteriol 181:1968–1970
Thanabalu T, Koronakis E, Hughes C, Koronakis V (1998) Substrate-induced assembly of a contiguous channel for protein export from E. coli: reversible bridging of an inner-membrane translocase to an outer membrane exit pore. EMBO J 17:6487–6496. doi:10.1093/emboj/17.22.6487
German GJ, Misra R (2001) The TolC protein of Escherichia coli serves as a cell-surface receptor for the newly characterized TLS bacteriophage. J Mol Biol 308:579–585. doi:10.1006/jmbi.2001.4578
Saier MH Jr, Paulsen IT, Sliwinski MK, Pao SS, Skurray RA, Nikaido H (1998) Evolutionary origins of multidrug and drug-specific efflux pumps in bacteria. FASEB J 12:265–274
Thanassi DG, Cheng LW, Nikaido H (1997) Active efflux of bile salts by Escherichia coli. J Bacteriol 179:2512–2518
Bina JE, Mekalanos JJ (2001) Vibrio cholerae tolC is required for bile resistance and colonization. Infect Immun 69:4681–4685. doi:10.1128/IAI.69.7.4681-4685.2001
Hatfaludi T, Al-Hasani K, Dunstone M, Boyce J, Adler B (2008) Characterization of TolC efflux pump proteins from Pasteurella multocida. Antimicrob Agents Chemother 52:4166–4171. doi:10.1128/AAC.00245-08
Johnson JM, Church GM (1999) Alignment and structure prediction of divergent protein families: periplasmic and outer membrane proteins of bacterial efflux pumps. J Mol Biol 287:695–715. doi:10.1006/jmbi.1999.2630
Koronakis V, Sharff A, Koronakis E, Luisi B, Hughes C (2000) Crystal structure of the bacterial membrane protein TolC central to multidrug efflux and protein export. Nature 405:914–919. doi:10.1038/35016007
Sulavik MC, Houseweart C, Cramer C, Jiwani N, Murgolo N, Greene J, DiDomenico B, Shaw KJ et al (2001) Antibiotic susceptibility profiles of Escherichia coli strains lacking multidrug efflux pump genes. Antimicrob Agents Chemother 45:1126–1136. doi:10.1128/AAC.45.4.1126-1136.2001
Jo JT, Brinkman FS, Hancock RE (2003) Aminoglycoside efflux in Pseudomonas aeruginosa: involvement of novel outer membrane proteins. Antimicrob Agents Chemother 47:1101–1111. doi:10.1128/AAC.47.3.1101-1111.2003
Barabote RD, Johnson OL, Zetina E, San Francisco SK, Fralick JA, San Francisco MJ (2003) Erwinia chrysanthemi tolC is involved in resistance to antimicrobial plant chemicals and is essential for phytopathogenesis. J Bacteriol 185:5772–5778. doi:10.1128/JB.185.19.5772-5778.2003
Gil H, Platz GJ, Forestal CA, Monfett M, Bakshi CS, Sellati TJ, Furie MB, Benach JL et al (2006) Deletion of TolC orthologs in Francisella tularensis identifies roles in multidrug resistance and virulence. Proc Natl Acad Sci U S A 103:12897–12902. doi:10.1073/pnas.0602582103
Cosme AM, Becker A, Santos MR, Sharypova LA, Santos PM, Moreira LM (2008) The outer membrane protein TolC from Sinorhizobium meliloti affects protein secretion, polysaccharide biosynthesis, antimicrobial resistance, and symbiosis. Mol Plant Microbe Interact 21:947–957. doi:10.1094/MPMI-21-7-0947
Al-Karablieh N, Weingart H, Ullrich MS (2009) The outer membrane protein TolC is required for phytoalexin resistance and virulence of the fire blight pathogen Erwinia amylovora. Microb Biotechnol 2:465–475. doi:10.1111/j.1751-7915.2009.00095.x
Fenosa A, Fuste E, Ruiz L, Veiga-Crespo P, Vinuesa T, Guallar V, Villa TG, Vinas M (2009) Role of TolC in Klebsiella oxytoca resistance to antibiotics. J Antimicrob Chemother 63:668–674. doi:10.1093/jac/dkp027
Ferhat M, Atlan D, Vianney A, Lazzaroni JC, Doublet P, Gilbert C (2009) The TolC protein of Legionella pneumophila plays a major role in multi-drug resistance and the early steps of host invasion. PLoS One 4:e7732. doi:10.1371/journal.pone.0007732
Horiyama T, Yamaguchi A, Nishino K (2010) TolC dependency of multidrug efflux systems in Salmonella enterica serovar Typhimurium. J Antimicrob Chemother 65:1372–1376. doi:10.1093/jac/dkq160
Letoffe S, Ghigo JM, Wandersman C (1993) Identification of two components of the Serratia marcescens metalloprotease transporter: protease SM secretion in Escherichia coli is TolC dependent. J Bacteriol 175:7321–7328
Letoffe S, Ghigo JM, Wandersman C (1994) Secretion of the Serratia marcescens HasA protein by an ABC transporter. J Bacteriol 176:5372–5377
Akatsuka H, Kawai E, Omori K, Shibatani T (1995) The three genes lipB, lipC, and lipD involved in the extracellular secretion of the Serratia marcescens lipase which lacks an N-terminal signal peptide. J Bacteriol 177:6381–6389
Akatsuka H, Binet R, Kawai E, Wandersman C, Omori K (1997) Lipase secretion by bacterial hybrid ATP-binding cassette exporters: molecular recognition of the LipBCD, PrtDEF, and HasDEF exporters. J Bacteriol 179:4754–4760
Iwashita M, Nishi J, Wakimoto N, Fujiyama R, Yamamoto K, Tokuda K, Manago K, Kawano Y (2006) Role of the carboxy-terminal region of the outer membrane protein AatA in the export of dispersin from enteroaggregative Escherichia coli. FEMS Microbiol Lett 256:266–272. doi:10.1111/j.1574-6968.2006.00123.x
Kulathila R, Kulathila R, Indic M, van den Berg B (2011) Crystal structure of Escherichia coli CusC, the outer membrane component of a heavy metal efflux pump. PLoS One 6: e15610. doi:10.1371/journal.pone.0015610
Akama H, Kanemaki M, Yoshimura M, Tsukihara T, Kashiwagi T, Yoneyama H, Narita S, Nakagawa A et al (2004) Crystal structure of the drug discharge outer membrane protein, OprM, of Pseudomonas aeruginosa: dual modes of membrane anchoring and occluded cavity end. J Biol Chem 279:52816–52819. doi:10.1074/jbc.C400445200
Phan G, Benabdelhak H, Lascombe MB, Benas P, Rety S, Picard M, Ducruix A, Etchebest C et al (2010) Structural and dynamical insights into the opening mechanism of P. aeruginosa OprM channel. Structure 18:507–517. doi:10.1016/j.str.2010.01.018
Yonehara R, Yamashita E, Nakagawa A (2016) Crystal structures of OprN and OprJ, outer membrane factors of multidrug tripartite efflux pumps of Pseudomonas aeruginosa. Proteins 84:759–769. doi:10.1002/prot.25022
Federici L, Du D, Walas F, Matsumura H, Fernandez-Recio J, McKeegan KS, Borges-Walmsley MI, Luisi BF et al (2005) The crystal structure of the outer membrane protein VceC from the bacterial pathogen Vibrio cholerae at 1.8 Å resolution. J Biol Chem 280:15307–15314. doi:10.1074/jbc.M500401200
Su CC, Radhakrishnan A, Kumar N, Long F, Bolla JR, Lei HT, Delmar JA, Do SV et al (2014) Crystal structure of the Campylobacter jejuni CmeC outer membrane channel. Protein Sci 23:954–961. doi:10.1002/pro.2478
Lei HT, Chou TH, Su CC, Bolla JR, Kumar N, Radhakrishnan A, Long F, Delmar JA et al (2014) Crystal structure of the open state of the Neisseria gonorrhoeae MtrE outer membrane channel. PLoS One 9:e97475. doi:10.1371/journal.pone.0097475
Delcour AH (2002) Structure and function of pore-forming β-barrels from bacteria. J Mol Microbiol Biotechnol 4:1–10
Andersen C, Koronakis E, Bokma E, Eswaran J, Humphreys D, Hughes C, Koronakis V (2002) Transition to the open state of the TolC periplasmic tunnel entrance. Proc Natl Acad Sci U S A 99:11103–11108. doi:10.1073/pnas.162039399
Bavro VN, Pietras Z, Furnham N, Perez-Cano L, Fernandez-Recio J, Pei XY, Misra R, Luisi B (2008) Assembly and channel opening in a bacterial drug efflux machine. Mol Cell 30:114–121. doi:10.1016/j.molcel.2008.02.015
Andersen C, Koronakis E, Hughes C, Koronakis V (2002) An aspartate ring at the TolC tunnel entrance determines ion selectivity and presents a target for blocking by large cations. Mol Microbiol 44:1131–1139. doi:10.1046/j.1365-2958.2002.02898.x
Eswaran J, Hughes C, Koronakis V (2003) Locking TolC entrance helices to prevent protein translocation by the bacterial type I export apparatus. J Mol Biol 327:309–315. doi:10.1016/S0022-2836(03)00116-5
Andersen C, Hughes C, Koronakis V (2001) Protein export and drug efflux through bacterial channel-tunnels. Curr Opin Cell Biol 13:412–416. doi:10.1016/S0955-0674(00)00229-5
Lei HT, Bolla JR, Bishop NR, Su CC, Yu EW (2014) Crystal structures of CusC review conformational changes accompanying folding and transmembrane channel formation. J Mol Biol 426:403–411. doi:10.1016/j.jmb.2013.09.042
Monlezun L, Phan G, Benabdelhak H, Lascombe MB, Enguene VY, Picard M, Broutin I (2015) New OprM structure highlighting the nature of the N-terminal anchor. Front Microbiol 6:667. doi:10.3389/fmicb.2015.00667
Yamanaka H, Izawa H, Okamoto K (2001) Carboxy-terminal region involved in activity of Escherichia coli TolC. J Bacteriol 183:6961–6964. doi:10.1128/JB.183.23.6961-6964.2001
Yamanaka H, Nomura T, Morisada N, Shinoda S, Okamoto K (2002) Site-directed mutagenesis studies of the amino acid residue at position 412 of Escherichia coli TolC which is required for the activity. Microb Pathog 33:81–89. doi:10.1006/mpat.2002.0519
Bai J, Bhagavathi R, Tran P, Muzzarelli K, Wang D, Fralick JA (2014) Evidence that the C-terminal region is involved in the stability and functionality of OprM in E. coli. Microbiol Res 169:425–431. doi:10.1016/j.micres.2013.08.006
Koronakis V, Eswaran J, Hughes C (2004) Structure and function of TolC: the bacterial exit duct for proteins and drugs. Annu Rev Biochem 73:467–489. doi:10.1146/annurev.biochem.73.011303.074104
Pei XY, Hinchliffe P, Symmons MF, Koronakis E, Benz R, Hughes C, Koronakis V (2011) Structures of sequential open states in a symmetrical opening transition of the TolC exit duct. Proc Natl Acad Sci U S A 108:2112–2117. doi:10.1073/pnas.1012588108
Krishnamoorthy G, Tikhonova EB, Dhamdhere G, Zgurskaya HI (2013) On the role of TolC in multidrug efflux: the function and assembly of AcrAB-TolC tolerate significant depletion of intracellular TolC protein. Mol Microbiol 87:982–997. doi:10.1111/mmi.12143
Augustus AM, Celaya T, Husain F, Humbard M, Misra R (2004) Antibiotic-sensitive TolC mutants and their suppressors. J Bacteriol 186:1851–1860. doi:10.1128/JB.186.6.1851-1860.2004
Janganan TK, Bavro VN, Zhang L, Borges-Walmsley MI, Walmsley AR (2013) Tripartite efflux pumps: energy is required for dissociation, but not assembly or opening of the outer membrane channel of the pump. Mol Microbiol 88:590–602. doi:10.1111/mmi.12211
Zgurskaya HI, Yamada Y, Tikhonova EB, Ge Q, Krishnamoorthy G (2009) Structural and functional diversity of bacterial membrane fusion proteins. Biochim Biophys Acta 1794:794–907. doi:10.1016/j.bbapap.2008.10.010
Symmons MF, Marshall RL, Bavro VN (2015) Architecture and roles of periplasmic adaptor proteins in tripartite efflux assemblies. Front Microbiol 6:513. doi:10.3389/fmicb.2015.00513
Zgurskaya HI, Nikaido H (1999) Bypassing the periplasm: reconstitution of the AcrAB multidrug efflux pump of Escherichia coli. Proc Natl Acad Sci U S A 96:7190–7195. doi:10.1073/pnas.96.13.7190
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI (2007) Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB. Mol Microbiol 63:895–910. doi:10.1111/j.1365-2958.2006.05549.x
Lin HT, Bavro VN, Barrera NP, Frankish HM, Velamakanni S, van Veen HW, Robinson CV, Borges-Walmsley MI et al (2009) MacB ABC transporter is a dimer whose ATPase activity and macrolide-binding capacity are regulated by the membrane fusion protein MacA. J Biol Chem 284:1145–1154. doi:10.1074/jbc.M806964200
Ntsogo Enguene VY, Verchere A, Phan G, Broutin I, Picard M (2015) Catch me if you can: a biotinylated proteoliposome affinity assay for the investigation of assembly of the MexA-MexB-OprM efflux pump from Pseudomonas aeruginosa. Front Microbiol 6:541. doi:10.3389/fmicb.2015.00541
Zgurskaya HI, Nikaido H (1999) AcrA is a highly asymmetric protein capable of spanning the periplasm. J Mol Biol 285:409–420. doi:10.1006/jmbi.1998.2313
Mikolosko J, Bobyk K, Zgurskaya HI, Ghosh P (2006) Conformational flexibility in the multidrug efflux system protein AcrA. Structure 14:577–587. doi:10.1016/j.str.2005.11.015
Symmons MF, Bokma E, Koronakis E, Hughes C, Koronakis V (2009) The assembled structure of a complete tripartite bacterial multidrug efflux pump. Proc Natl Acad Sci U S A 106:7173–7178. doi:10.1073/pnas.0900693106
Greene NP, Hinchliffe P, Crow A, Ababou A, Hughes C, Koronakis V (2013) Structure of an atypical periplasmic adaptor from a multidrug efflux pump of the spirochete Borrelia burgdorferi. FEBS Lett 587:2984–2988. doi:10.1016/j.febslet.2013.06.056
Su CC, Yang F, Long F, Reyon D, Routh MD, Kuo DW, Mokhtari AK, Van Ornam JD et al (2009) Crystal structure of the membrane fusion protein CusB from Escherichia coli. J Mol Biol 393:342–355. doi:10.1016/j.jmb.2009.08.029
Staron P, Forchhammer K, Maldener I (2014) Structure-function analysis of the ATP-driven glycolipid efflux pump DevBCA reveals complex organization with TolC/HgdD. FEBS Lett 588:395–400. doi:10.1016/j.febslet.2013.12.004
Higgins MK, Bokma E, Koronakis E, Hughes C, Koronakis V (2004) Structure of the periplasmic component of a bacterial drug efflux pump. Proc Natl Acad Sci U S A 101:9994–9999. doi:10.1073/pnas.0400375101
Bersch B, Derfoufi KM, De Angelis F, Auquier V, Ekende EN, Mergeay M, Ruysschaert JM, Vandenbussche G (2011) Structural and metal binding characterization of the C-terminal metallochaperone domain of membrane fusion protein SilB from Cupriavidus metallidurans CH34. Biochemistry 50:2194–2204. doi:10.1021/bi200005k
Loftin IR, Franke S, Roberts SA, Weichsel A, Heroux A, Montfort WR, Rensing C, McEvoy MM (2005) A novel copper-binding fold for the periplasmic copper resistance protein CusF. Biochemistry 44:10533–10540. doi:10.1021/bi050827b
Ucisik MN, Chakravorty DK, Merz KM Jr (2015) Models for the metal transfer complex of the N-terminal region of CusB and CusF. Biochemistry 54:4226–4235. doi:10.1021/acs.biochem.5b00195
Hinchliffe P, Greene NP, Paterson NG, Crow A, Hughes C, Koronakis V (2014) Structure of the periplasmic adaptor protein from a major facilitator superfamily (MFS) multidrug efflux pump. FEBS Lett 588:3147–3153. doi:10.1016/j.febslet.2014.06.055
Kim JS, Song S, Lee M, Lee S, Lee K, Ha NC (2016) Crystal structure of a soluble fragment of the membrane fusion protein HlyD in a type I secretion system of Gram-negative bacteria. Structure 24:477–485. doi:10.1016/j.str.2015.12.012
Zgurskaya HI, Nikaido H (2000) Cross-linked complex between oligomeric periplasmic lipoprotein AcrA and the inner-membrane-associated multidrug efflux pump AcrB from Escherichia coli. J Bacteriol 182:4264–4267. doi:10.1128/JB.182.15.4264-4267.2000
Akama H, Matsuura T, Kashiwagi S, Yoneyama H, Narita S, Tsukihara T, Nakagawa A, Nakae T (2004) Crystal structure of the membrane fusion protein, MexA, of the multidrug transporter in Pseudomonas aeruginosa. J Biol Chem 279:25939–25942. doi:10.1074/jbc.C400164200
Yum S, Xu Y, Piao S, Sim SH, Kim HM, Jo WS, Kim KJ, Kweon HS et al (2009) Crystal structure of the periplasmic component of a tripartite macrolide-specific efflux pump. J Mol Biol 387:1286–1297. doi:10.1016/j.jmb.2009.02.048
Tikhonova EB, Yamada Y, Zgurskaya HI (2011) Sequential mechanism of assembly of multidrug efflux pump AcrAB-TolC. Chem Biol 18:454–463. doi:10.1016/j.chembiol.2011.02.011
Tikhonova EB, Dastidar V, Rybenkov VV, Zgurskaya HI (2009) Kinetic control of TolC recruitment by multidrug efflux complexes. Proc Natl Acad Sci U S A 106:16416–16421. doi:10.1073/pnas.0906601106
Mima T, Joshi S, Gomez-Escalada M, Schweizer HP (2007) Identification and characterization of TriABC-OpmH, a triclosan efflux pump of Pseudomonas aeruginosa requiring two membrane fusion proteins. J Bacteriol 189:7600–7609. doi:10.1128/JB.00850-07
Xu Y, Lee M, Moeller A, Song S, Yoon BY, Kim HM, Jun SY, Lee K et al (2011) Funnel-like hexameric assembly of the periplasmic adapter protein in the tripartite multidrug efflux pump in Gram-negative bacteria. J Biol Chem 286:17910–17920. doi:10.1074/jbc.M111.238535
Weeks JW, Nickels LM, Ntreh AT, Zgurskaya HI (2015) Non-equivalent roles of two periplasmic subunits in the function and assembly of triclosan pump TriABC from Pseudomonas aeruginosa. Mol Microbiol 98:343–356. doi:10.1111/mmi.13124
Weeks JW, Celaya-Kolb T, Pecora S, Misra R (2010) AcrA suppressor alterations reverse the drug hypersensitivity phenotype of a TolC mutant by inducing TolC aperture opening. Mol Microbiol 75:1468–1483. doi:10.1111/j.1365-2958.2010.07068.x
Xu Y, Song S, Moeller A, Kim N, Piao S, Sim SH, Kang M, Yu W et al (2011) Functional implications of an intermeshing cogwheel-like interaction between TolC and MacA in the action of macrolide-specific efflux pump MacAB-TolC. J Biol Chem 286:13541–13549. doi:10.1074/jbc.M110.202598
Weeks JW, Bavro VN, Misra R (2014) Genetic assessment of the role of AcrB β-hairpins in the assembly of the TolC-AcrAB multidrug efflux pump of Escherichia coli. Mol Microbiol 91:965–975. doi:10.1111/mmi.12508
Pos KM (2009) Drug transport mechanism of the AcrB efflux pump. Biochim Biophys Acta 1794:782–793. doi:10.1016/j.bbapap.2008.12.015
Ge Q, Yamada Y, Zgurskaya H (2009) The C-terminal domain of AcrA is essential for the assembly and function of the multidrug efflux pump AcrAB-TolC. J Bacteriol 191:4365–4371. doi:10.1128/JB.00204-09
Modali SD, Zgurskaya HI (2011) The periplasmic membrane proximal domain of MacA acts as a switch in stimulation of ATP hydrolysis by MacB transporter. Mol Microbiol 81:937–951. doi:10.1111/j.1365-2958.2011.07744.x
Elkins CA, Nikaido H (2003) Chimeric analysis of AcrA function reveals the importance of its C-terminal domain in its interaction with the AcrB multidrug efflux pump. J Bacteriol 185:5349–5356. doi:10.1128/JB.185.18.5349-5356.2003
Chacón KN, Mealman TD, McEvoy MM, Blackburn NJ (2014) Tracking metal ions through a Cu/Ag efflux pump assigns the functional roles of the periplasmic proteins. Proc Natl Acad Sci U S A 111:15373–15378. doi:10.1073/pnas.1411475111
Ip H, Stratton K, Zgurskaya H, Liu J (2003) pH-induced conformational changes of AcrA, the membrane fusion protein of Escherichia coli multidrug efflux system. J Biol Chem 278:50474–50482. doi:10.1074/jbc.M305152200
Vaccaro L, Koronakis V, Sansom MS (2006) Flexibility in a drug transport accessory protein: molecular dynamics simulations of MexA. Biophys J 91:558–564. doi:10.1529/biophysj.105.080010
Wang B, Weng J, Fan K, Wang W (2012) Interdomain flexibility and pH-induced conformational changes of AcrA revealed by molecular dynamics simulations. J Phys Chem B 116:3411–3420. doi:10.1021/jp212221v
Lu S, Zgurskaya HI (2012) Role of ATP binding and hydrolysis in assembly of MacAB-TolC macrolide transporter. Mol Microbiol 86:1132–1143. doi:10.1111/mmi.12046
De Angelis F, Lee JK, O’Connell JD 3rd, Miercke LJ, Verschueren KH, Srinivasan V, Bauvois C, Govaerts C et al (2010) Metal-induced conformational changes in ZneB suggest an active role of membrane fusion proteins in efflux resistance systems. Proc Natl Acad Sci U S A 107:11038–11043. doi:10.1073/pnas.1003908107
Lu S, Zgurskaya HI (2013) MacA, a periplasmic membrane fusion protein of the macrolide transporter MacAB-TolC, binds lipopolysaccharide core specifically and with high affinity. J Bacteriol 195:4865–4872. doi:10.1128/JB.00756-13
Bagai I, Liu W, Rensing C, Blackburn NJ, McEvoy MM (2007) Substrate-linked conformational change in the periplasmic component of a Cu(I)/Ag(I) efflux system. J Biol Chem 282:35695–35702. doi:10.1074/jbc.M703937200
Delmar JA, Su CC, Yu EW (2013) Structural mechanisms of heavy-metal extrusion by the Cus efflux system. Biometals 26:593–607. doi:10.1007/s10534-013-9628-0
Nehme D, Poole K (2007) Assembly of the MexAB-OprM multidrug pump of Pseudomonas aeruginosa: component interactions defined by the study of pump mutant suppressors. J Bacteriol 189:6118–6127. doi:10.1128/JB.00718-07
Gerken H, Misra R (2004) Genetic evidence for functional interactions between TolC and AcrA proteins of a major antibiotic efflux pump of Escherichia coli. Mol Microbiol 54:620–631. doi:10.1111/j.1365-2958.2004.04301.x
Krishnamoorthy G, Tikhonova EB, Zgurskaya HI (2008) Fitting periplasmic membrane fusion proteins to inner membrane transporters: mutations that enable Escherichia coli AcrA to function with Pseudomonas aeruginosa MexB. J Bacteriol 190:691–698. doi:10.1128/JB.01276-07
Fernandez-Recio J, Walas F, Federici L, Venkatesh Pratap J, Bavro VN, Miguel RN, Mizuguchi K, Luisi B (2004) A model of a transmembrane drug-efflux pump from Gram-negative bacteria. FEBS Lett 578:5–9. doi:10.1016/j.febslet.2004.10.097
Janganan TK, Bavro VN, Zhang L, Matak-Vinkovic D, Barrera NP, Venien-Bryan C, Robinson CV, Borges-Walmsley MI et al (2011) Evidence for the assembly of a bacterial tripartite multidrug pump with a stoichiometry of 3:6:3. J Biol Chem 286:26900–26912. doi:10.1074/jbc.M111.246595
Xu Y, Moeller A, Jun SY, Le M, Yoon BY, Kim JS, Lee K, Ha NC (2012) Assembly and channel opening of outer membrane protein in tripartite drug efflux pumps of Gram-negative bacteria. J Biol Chem 287:11740–11750. doi:10.1074/jbc.M111.329375
Lobedanz S, Bokma E, Symmons MF, Koronakis E, Hughes C, Koronakis V (2007) A periplasmic coiled-coil interface underlying TolC recruitment and the assembly of bacterial drug efflux pumps. Proc Natl Acad Sci U S A 104:4612–4617. doi:10.1073/pnas.0610160104
Stegmeier JF, Polleichtner G, Brandes N, Hotz C, Andersen C (2006) Importance of the adaptor (membrane fusion) protein hairpin domain for the functionality of multidrug efflux pumps. Biochemistry 45:10303–10312. doi:10.1021/bi060320g
Touze T, Eswaran J, Bokma E, Koronakis E, Hughes C, Koronakis V (2004) Interactions underlying assembly of the Escherichia coli AcrAB-TolC multidrug efflux system. Mol Microbiol 53:697–706. doi:10.1111/j.1365-2958.2004.04158.x
Tamura N, Murakami S, Oyama Y, Ishiguro M, Yamaguchi A (2005) Direct interaction of multidrug efflux transporter AcrB and outer membrane channel TolC detected via site-directed disulfide cross-linking. Biochemistry 44:11115–11121. doi:10.1021/bi050452u
Kim JS, Jeong H, Song S, Kim HY, Lee K, Hyun J, Ha NC (2015) Structure of the tripartite multidrug efflux pump AcrAB-TolC suggests an alternative assembly mode. Mol Cells 38:180–186. doi:10.14348/molcells.2015.2277
Binshtein E, Ohi MD (2015) Cryo-electron microscopy and the amazing race to atomic resolution. Biochemistry 54:3133–3141. doi:10.1021/acs.biochem.5b00114
Jeong H, Kim JS, Song S, Shigematsu H, Yokoyama T, Hyun J, Ha NC (2016) Pseudoatomic structure of the tripartite multidrug efflux pump AcrAB-TolC reveals the intermeshing cogwheel-like interaction between AcrA and TolC. Structure 24:272–276. doi:10.1016/j.str.2015.12.007
Daury L, Orange F, Taveau JC, Verchere A, Monlezun L, Gounou C, Marreddy RK, Picard M et al (2016) Tripartite assembly of RND multidrug efflux pumps. Nat Commun 7:10731. doi:10.1038/ncomms10731
Xu Y, Sim SH, Song S, Piao S, Kim HM, Jin XL, Lee K, Ha NC (2010) The tip region of the MacA alpha-hairpin is important for the binding to TolC to the Escherichia coli MacAB-TolC pump. Biochem Biophys Res Commun 394:962–965. doi:10.1016/j.bbrc.2010.03.097
Lee M, Jun SY, Yoon BY, Song S, Lee K, Ha NC (2012) Membrane fusion proteins of type I secretion system and tripartite efflux pumps share a binding motif for TolC in Gram-negative bacteria. PLoS One 7:e40460. doi:10.1371/journal.pone.0040460
Bokma E, Koronakis E, Lobedanz S, Hughes C, Koronakis V (2006) Directed evolution of a bacterial efflux pump: adaptation of the E. coli TolC exit duct to the Pseudomonas MexAB translocase. FEBS Lett 580:5339–5343. doi:10.1016/j.febslet.2006.09.005
Bunikis I, Denker K, Ostberg Y, Andersen C, Benz R, Bergstrom S (2008) An RND-type efflux system in Borrelia burgdorferi is involved in virulence and resistance to antimicrobial compounds. PLoS Pathog 4:e1000009. doi:10.1371/journal.ppat.1000009
Hayashi K, Ryosuke N, Sakurai K, Kitagawa K, Yamasaki S, Nishino K, Yamaguchi A (2016) AcrB-AcrA fusion proteins that act as multidrug efflux transporters. J Bacteriol 198:332–342. doi:10.1128/JB.00587-15
Hwang J, Zhong X, Tai PC (1997) Interactions of dedicated export membrane proteins of the colicin V secretion system: CvaA, a member of the membrane fusion protein family, interacts with CvaB and TolC. J Bacteriol 179:6264–6270
Tikhonova EB, Zgurskaya HI (2004) AcrA, AcrB, and TolC of Escherichia coli form a stable intermembrane multidrug efflux complex. J Biol Chem 279:32116–32124. doi:10.1074/jbc.M402230200
Kim EH, Nies DH, McEvoy MM, Rensing C (2011) Switch or funnel: how RND-type transport systems control periplasmic metal homeostasis. J Bacteriol 193:2381–2387. doi:10.1128/JB.01323-10
Verchère A, Dezi M, Adrien V, Broutin I, Picard M (2015) In vitro transport activity of the fully assembled MexAB-OprM efflux pump from Pseudomonas aeruginosa. Nat Commun 6:6890. doi:10.1038/ncomms7890
Chuanchuen R, Murata T, Gotoh N, Schweizer HP (2005) Substrate-dependent utilization of OprM or OpmH by the Pseudomonas aeruginosa MexJK efflux pump. Antimicrob Agents Chemother 49:2133–2136. doi:10.1128/AAC.49.5.2133-2136.2005
Baranova N, Nikaido H (2002) The baeSR two-component regulatory system activates transcription of the yegMNOB (mdtABCD) transporter gene cluster in Escherichia coli and increases its resistance to novobiocin and deoxycholate. J Bacteriol 184:4168–4176. doi:10.1128/JB.184.15.4168-4176.2002
Kim HS, Nagore D, Nikaido H (2010) Multidrug efflux pump MdtBC of Escherichia coli is active only as a B2C heterotrimer. J Bacteriol 192:1377–1386. doi:10.1128/JB.01448-09
Kim HS, Nikaido H (2012) Different functions of MdtB and MdtC subunits in the heterotrimeric efflux transporter MdtB2C complex of Escherichia coli. Biochemistry 51:4188–4197. doi:10.1021/bi300379y
Mima T, Kohira N, Li Y, Sekiya H, Ogawa W, Kuroda T, Tsuchiya T (2009) Gene cloning and characteristics of the RND-type multidrug efflux pump MuxABC-OpmB possessing two RND components in Pseudomonas aeruginosa. Microbiology 155:3509–3517. doi:10.1099/mic.0.031260-0
Yang L, Chen L, Shen L, Surette M, Duan K (2011) Inactivation of MuxABC-OpmB transporter system in Pseudomonas aeruginosa leads to increased ampicillin and carbenicillin resistance and decreased virulence. J Microbiol 49:107–114. doi:10.1007/s12275-011-0186-2
Nagakubo S, Nishino K, Hirata T, Yamaguchi A (2002) The putative response regulator BaeR stimulates multidrug resistance of Escherichia coli via a novel multidrug exporter system, MdtABC. J Bacteriol 184:4161–4167. doi:10.1128/JB.184.15.4161-4167.2002
Acknowledgments
Studies in the Zgurskaya laboratory are sponsored by the Department of the Defense, Defense Threat Reduction Agency, and by the National Institute of Health (grant AI052293) in the USA. Studies in the Bavro laboratory are supported by funding from the Wellcome Trust and the Biotechnology and Biological Sciences Research Council, UK. The contents of this chapter do not necessarily reflect the position or the policy of the federal government, and no official endorsement should be inferred.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2016 Springer International Publishing Switzerland
About this chapter
Cite this chapter
Zgurskaya, H.I., Bavro, V.N., Weeks, J.W., Krishnamoorthy, G. (2016). Multidrug Efflux in the Context of Two-Membrane Cell Envelopes. In: Li, XZ., Elkins, C., Zgurskaya, H. (eds) Efflux-Mediated Antimicrobial Resistance in Bacteria. Adis, Cham. https://doi.org/10.1007/978-3-319-39658-3_5
Download citation
DOI: https://doi.org/10.1007/978-3-319-39658-3_5
Published:
Publisher Name: Adis, Cham
Print ISBN: 978-3-319-39656-9
Online ISBN: 978-3-319-39658-3
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)