Abstract
Fungus–bacterium interactions (FBIs) occur frequently in the environment, and they are mediated by physical association and molecular communication. The FBI affects both fungal and bacterial development and functioning, and their applicable value has become apparent for medicine, biotechnology, and agriculture. Symbiotic relationships that fungi actively engage with plants and animals are also strongly affected, and even facilitated, by bacteria. Common themes have recently emerged, which govern the physical and biochemical characteristics of these associations, whatever the ecological niches or applications investigated. This chapter highlights recent contributions to the understanding of FBI and addresses the rapid methodological development made in this area.
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References
Andrade-Domínguez A, Salazar E, Vargas-Lagunas Mdel C, Kolter R, Encarnación S (2014) Eco-evolutionary feedbacks drive species interactions. ISME J 8:1041–1054
Antony-Babu S, Deveau A, Van Nostrand JD et al (2014) Black truffle-associated bacterial communities during the development and maturation of Tuber melanosporum ascocarps and putative functional roles. Environ Microbiol 16:2831–47
Artursson V, Finlay RD, Jansson JK (2006) Interactions between arbuscular mycorrhizal fungi and bacteria and their potential for stimulating plant growth. Environ Microbiol 8:1–10
Aspray TJ, Eirian Jones E, Whipps JM, Bending GD (2006) Importance of mycorrhization helper bacteria cell density and metabolite localization for the Pinus sylvestris-Lactarius rufus symbiosis. FEMS Microbiol Ecol 56:25–33
Aylward F, Suen G, Biedermann PH, Adams AS, Scott JJ, Malfatti SA, Glavina del Rio T, Tringe SG, Poulsen M, Raffa KF, Klepzig KD, Currie CR (2014) Convergent bacterial microbiotas in the fungal agricultural systems of insects. MBio 5, e02077
Balbontín R, Vlamakis H, Kolter R (2014) Mutualistic interaction between Salmonella enterica and Aspergillus niger and its effects on Zea mays colonization. Microb Biotechnol 7:589–600
Bamford CV, d’Mello A, Nobbs AH, Dutton LC, Vickerman MM, Jenkinson HF (2009) Streptococcus gordonii modulates Candida albicans biofilm formation through intergeneric communication. Infect Immun 77:3696–3704
Barea JM, Pozo MJ, Azcón R, Azcón-Aguilar C (2005) Microbial co-operation in the rhizosphere. J Exp Bot 56:1761–1768
Battin TJ, Slaon WT, Kjelleberg S, Daims H, Head IM, Curtis TP, Eberl L (2007) Microbial landscapes: new paths to biofilm research. Nat Rev Microbiol 5:76–78
Bertaux J, Schmid M, Prevost-Boure NC, Churin JL, Hartmann A, Garbaye J, Frey-Klett P (2003) In situ identification of intracellular bacteria related to Paenibacillus spp. in the mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N. Appl Environ Microbiol 69:4243–4248
Bianciotto V, Genre A, Jargeat P, Lumini E, Bécard G, Bonfante P (2004) Vertical transmission of endobacteria in the arbuscular mycorrhizal fungus Gigaspora margarita through generation of vegetative spores. Appl Environ Microbiol 70:3600–3608
Boer W, Folman LB, Summerbell RC, Boddy L (2005) Living in a fungal world: impact of fungi on soil bacterial niche development. FEMS Microbiol Rev 29:795–811
Bowen GD, Theodorou C (1979) Interactions between bacteria and ectomycorrhizal fungi. Soil Biol Biochem 11:119–126
Briard B, Bomme P, Lechner BE, Mislin GL, Lair V, Prévost MC, Latgé JP, Haas H, Beauvais A (2015) Pseudomonas aeruginosa manipulates redox and iron homeostasis of its microbiota partner Aspergillus fumigatus via phenazines. Sci Rep 5:8220
Brule C, Frex-Klett P, Pierrat VC, Courrier S, Gerard F, Lemoine MC, Rousselet JL, Sommer G, Garbaye J (2001) Survival in the soil of the ectomycorrhizal fungus Laccaria bicolor and the effects of a mycorrhiza helper Pseudomonas fluorescens. Soil Biol Biochem 33:1683–1694
Bruno F, Marinella M, Santamaria M (2015) e-DNA meta-barcoding: from NGS raw data to taxonomic profiling. Methods Mol Biol 1269:257–78
Cafaro MJ, Poulsen M, Little AE, Price SL, Gerardo NM, Wong B, Stuart AE, Larget B, Abbot P, Currie CR (2011) Specificity in the symbiotic association between fungus-growing ants and protective Pseudonocardia bacteria. Proc Biol Sci 278:1814–1822
Caravaca F, Maboreke H, Kurth F, Herrmann S, Tarkka MT, Ruess L (2015) Synergists and antagonists in the rhizosphere modulate microbial communities and growth of Quercus robur L. Soil Biol Biochem 82:65–73
Charlesworth SM, Nnadi E, Oyelola O, Bennett J, Warwick F, Jackson R, Lawson D (2012) Laboratory-based experiments to assess the use of green and food based compost to improve water quality in a Sustainable Drainage (SUDS) device such as a swale. Sci Total Environ 424:337–343
Clausen CA (1996) Bacterial associations with decaying wood: a review. Int J Biodeterior Biodegradation 37:101–107
Coleman JP, Hudson LL, McKnight SL, Farrow JM 3rd, Calfee MW, Lindsey CA, Pesci EC (2008) Pseudomonas aeruginosa PqsA is an anthranilate-coenzyme A ligase. J Bacteriol 190:1247–1255
Compant S, Duffy B, Nowak J, Clément C, Barka EA (2005) Use of plant growth-promoting bacteria for biocontrol of plant diseases: principles, mechanisms of action, and future prospects. Appl Environ Microbiol 71:4951–4959
Corsetti A, Rossi J, Gobbetti M (2001) Interactions between yeasts and bacteria in the smear surface-ripened cheeses. Int J Food Microbiol 69:1–10
Cugini C, Calfee MW, Farrow JM 3rd, Morales DK, Pesci EC, Hogan DA (2007) Farnesol, a common sesquiterpene, inhibits PQS production in Pseudomonas aeruginosa. Mol Microbiol 65:896–906
Currie CR, Poulsen M, Mendenhall J, Boomsma JJ, Billen J (2006) Coevolved crypts and exocrine glands support mutualistic bacteria in fungus-growing ants. Science 311:81–83
Currie CR, Scott JA, Summerbell RC, Malloch D (1999) Fungus-growing ants use antibiotic-producing bacteria to control garden parasites. Nature 398:701–704
Cusano AM, Burlinson P, Deveau A et al (2010) Pseudomonas fluorescens BBc6R8 type III secretion mutants no longer promote ectomycorrhizal symbiosis. Environ Microbiol Rep 3:203–210
Dalie DKD, Deschamps AM, Richard-Forget F (2010) Lactic acid bacteria-potential for control in food safety of mould growth and mycotoxins: a review. Food Control 21:370–380
de Boer M, Bom P, Kindt F, Keurentjer JB, van der Sluis I, van Loon LC, Bakker PAHM (2003) Control of Fusarium wilt of radish by combining Pseudomonas have different disease-suppressive mechanisms. Phytopathology 93:626–632
Deveau A, Barret M, Diedhiou AG et al (2014) Pairwise transcriptomic analysis of the interactions between the ectomycorrhizal fungus Laccaria bicolor S238N and three beneficial, neutral and antagonistic soil bacteria. Microb Ecol 69:146–159
Deveau A, Brulé C, Palin B, Champmartin D, Rubini P, Garbaye J, Sarniguet A, Frey-Klett P (2010) Role of fungal trehalose and bacterial thiamine in the improved survival and growth of the ectomycorrhizal fungus Laccaria bicolor S238N and the helper bacterium Pseudomonas fluorescens BBc6R8. Environ Microbiol Rep 2:560–568
Deveau A, Palin B, Delaruelle C et al (2007) The mycorrhiza helper Pseudomonas fluorescens BBc6R8 has a specific priming effect on the growth, morphology and gene expression of the ectomycorrhizal fungus Laccaria bicolor S238N. New Phytol 175:743–755
Dutton LC, Nobbs AH, Jepson K, Jepson MA, Vickerman MM, Aqeel Alawfi S, Munro CA, Lamont RJ, Jenkinson HF (2014) O-mannosylation in Candida albicans enables development of interkingdom biofilm communities. MBio 5, e00911
Erlacher A, Cernava T, Cardinale M et al (2015) Rhizobiales as functional and endosymbiontic members in the lichen symbiosis of Lobaria pulmonaria L. Front Microbiol 6:53
Falsetta ML, Klein MI, Colonne PM, Scott-Anne K, Gregoire S, Pai CH, Gonzalez-Begne M, Watson G, Krysan DJ, Bowen WH, Koo H (2014) Symbiotic relationship between Streptococcus mutans and Candida albicans synergizes virulence of plaque biofilms in vivo. Infect Immun 82:1968–1981
Faust K, Raes J (2012) Microbial interactions: from networks to models. Nat Rev Microbiol 10:538–550
Folman LB, Klein Gunnewiek PJ, Boddy L, de Boer W (2008) Impact of white-rot fungi on numbers and community composition of bacteria colonizing beech wood from forest soil. FEMS Microbiol Ecol 63:181–191
Foster RC, Marks GC (1967) Observations on the mycorrhizas of forest trees. II. The rhizosphere of Pinus radiata D. Don. Aust J Biol Sci 20:915–926
Fox EP, Cowley ES, Nobile CJ, Hartooni N, Newman DK, Johnson AD (2014) Symbiotic relationship between Streptococcus mutans and Candida albicans. Infect Immun 82:1968–1981
Frey-Klett P, Chavatte M, Clausse ML, Courrier S, Le Roux C, Raaijmakers J, Martinotti MG, Pierrat JC, Garbaye J (2005) Ectomycorrhizal symbiosis affects functional diversity of rhizosphere fluorescent pseudomonads. New Phytol 165:317–328
Frey-Klett P, Burlinson P, Deveau A, Barret M, Tarkka M, Sarniguet A (2011) Bacterial-fungal interactions: hyphens between agricultural, clinical, environmental, and food microbiologists. Microbiol Mol Biol Rev 75:583–609
Frey-Klett P, Garbaye J, Tarkka M (2007) The mycorrhiza helper bacteria revisited. New Phytol 176:22–36
Garbaye J (1994) Mycorrhiza helper bacteria: a new dimension to the mycorrhizal symbiosis. New Phytol 128:197–210
Garbaye J, Bowen GD (1987) Effect of different microflora on the success of ectomycorrhizal inoculation of Pinus radiata. Can J Forest Res 17:941–943
Garcia RA, Hotchkiss JH, Steinkraus KH (1999) The effect of lipids on bongkrekic (Bongkrek) acid toxin production by Burkholderia cocovenenans in coconut media. Food Addit Contam 16:63–69
Ghignone S, Salvioli A, Anca I, Lumini E, Ortu G, Petiti L, Cruveiller S, Bianciotto V, Piffanelli P, Lanfranco L, Bonfante P (2012) The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions. ISME J 6:136–145
Haeder S, Wirth R, Herz H, Spiteller D (2009) Candicidin-producing Streptomyces support leaf-cutting ants to protect their fungus garden against the pathogenic fungus Escovopsis. Proc Natl Acad Sci U S A 106:4742–4746
Harriott MM, Noverr MC (2011) Importance of Candida–bacterial polymicrobial biofilms in disease. Trends Microbiol 19:557–563
He Z, Deng Y, Van Nostrand JD et al (2010) GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. ISME J 4:1167–1179
Hervé V, Le Roux X, Uroz S, Gelhaye E, Frey-Klett P (2014) Diversity and structure of bacterial communities associated with Phanerochaete chrysosporium during wood decay. Environ Microbiol 16:2238–2252
Hoffman MT, Arnold AE (2010) Diverse bacteria inhabit living hyphae of phylogenetically diverse fungal endophytes. Appl Environ Microbiol 76:4063–4075
Hogan D, Vik A, Kolter R (2004) A Pseudomonas aeruginosa quorum-sensing molecule influences Candida albicans morphology. Mol Microbiol 54:1212–1223
Hogan DA, Kolter R (2002) Pseudomonas-Candida interactions: an ecological role for virulence factors. Science 296:2229–32
Hoppe B, Kahl T, Karasch P, Wubet T, Bauhus J, Buscot F, Krüger D (2014) Network analysis reveals ecological links between N-fixing bacteria and wood-decaying fungi. PLoS One 9, e88141
Huh C, Aldrich J, Mottahedeh J, Kwon H, Johnson C, Mrsh R (1998) Cloning and characterization of Physarum polycepharum tectonins. Homologues of limulus lectin L6. J Biol Chem 273:6565–6574
Irlinger F, Yung SA, Sarthou AS, Delbès-Paus C, Montel MC, Coton E, Coton M, Helinck S (2012) Ecological and aromatic impact of two Gram-negative bacteria (Psychrobacter celer and Hafnia alvei) inoculated as part of the whole microbial community of an experimental smear soft cheese. Int J Food Microbiol 153:332–338
Kohlmeier S, Smits TH, Ford RM, Keel C, Harms H, Wick LY (2005) Taking the fungal highway: mobilization of pollutant-degrading bacteria by fungi. Environ Sci Technol 39:4640–4646
Kurth F, Mailänder S, Bönn M, Feldhahn L, Herrmann S, Große I, Buscot F, Schrey SD, Tarkka MT (2014) Streptomyces-induced resistance against oak powdery mildew involves host plant responses in defense, photosynthesis, and secondary metabolism pathways. Mol Plant Microbe Interact 27:891–900
Kurth F, Feldhahn L, Bönn M, Herrmann S, Buscot F, Tarkka MT (2015) Large scale transcriptome analysis reveals interplay between development of forest trees and a beneficial mycorrhiza helper bacterium. BMC Genomics 16:658
Kurth F, Zeitler K, Feldhahn L, Neu TR, Weber T, Krištůfek V, Wubet T, Herrmann S, Buscot F, Tarkka MT (2013) Detection and quantification of a mycorrhization helper bacterium and a mycorrhizal fungus in plant-soil microcosms at different levels of complexity. BMC Microbiol 13:205
Lackner G, Moebius N, Hertweck C (2011) Endofungal bacterium controls its host by an hrp type III secretion system. ISME J 5:252–261
Lehr NA, Schrey SD, Bauer R, Hampp R, Tarkka MT (2007) Suppression of plant defence response by a mycorrhiza helper bacterium. New Phytol 174:892–903
Lehr NA, Schrey SD, Hampp R, Tarkka MT (2008) Root inoculation with a forest soil streptomycete leads to locally and systemically increased resistance against phytopathogens in Norway spruce. New Phytol 177:965–976
Little AE, Currie CR (2008) Black yeast symbionts compromise the efficiency of antibiotic defenses in fungus-growing ants. Ecology 89:1216–1222
Lo Cantore P, Lazzaroni S, Coraiola M, Dalla Serra M, Cafarchia C, Evidente A, Lacobellis NS (2006) Biological characterization of white line-inducing principle (WLIP) produced by Pseudomonas reactans NCPPB1311. Mol Plant Microbe Interact 19:1113–1120
Lumini E, Bianciotto V, Jargeat P, Novero M, Salvioli A, Faccio A, Bécard G, Bonfante P (2007) Presymbiotic growth and sporal morphology are affected in the arbuscular mycorrhizal fungus Gigaspora margarita cured of its endobacteria. Cell Microbiol 9:1716–1729
Maier A, Riedlinger J, Fiedler H-P, Hampp R (2004) Actinomycetales bacteria from a spruce stand: characterization and effects on growth of root symbiotic, and plant parasitic soil fungi in dual culture. Mycol Prog 3:129–136
Martin F, Aerts A, Ahrén D, Brun A, Danchin EG, Duchaussoy F, Gibon J, Kohler A, Lindquist E et al (2008) The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature 452:88–92
Mela F, Fritsche K, de Boer W et al (2011) Dual transcriptional profiling of a bacterial/fungal confrontation: Collimonas fungivorans versus Aspergillus niger. ISME J 5:1494–1504
Melin P, Schnürer J, Wagner EGH (2002) Proteome analysis of Aspergillus nidulans reveals proteins associated with the response to the antibiotic concanamycin A, produced by Streptomyces species. Mol Genet Genomics 267:695–702
Meyer JR, Linderman RG (1986) Response of subterranean clover to dual inoculation with vesicular-arbuscular fungi and a plant growth promoting bacterium. Soil Biol Biochem 18:185–190
Minerdi D, Fani R, Gallo R, Boarino A, Bonfante P (2001) Nitrogen fixation genes in an endosymbiotic Burkholderia strain. Appl Environ Microbiol 67:725–732
Moebius N, Üzüm Z, Dijksterhuis J, Lackner G, Hertweck C (2014) Active invasion of bacteria into living fungal cells. eLife 3, e03007
Morales DK, Grahl N, Okegbe C, Dietrich LE, Jacobs NJ, Hogan DA (2013) Control of Candida albicans metabolism and biofilm formation by Pseudomonas aeruginosa phenazines. MBio 4:e00526–12
Morales DK, Hogan DA (2010) Candida albicans interactions with bacteria in the context of human health and disease. PLoS Pathog 6, e1000886
Morales DK, Jacobs NJ, Rajamani S et al (2010) Antifungal mechanisms by which a novel Pseudomonas aeruginosa phenazine toxin kills Candida albicans in biofilms. Mol Microbiol 78:1379–1392
Mosse B (1970) Honey-coloured, sessile Endogone spores. II. Changes in fine structure during spore development. Arch Mikrobiol 74:129–145
Mowat E, Rajendran R, Williams C, McCulloch E, Jones B, Lang S, Ramage G (2010) Pseudomonas aeruginosa and their small diffusible extracellular molecules inhibit Aspergillus fumigatus biofilm formation. FEMS Microbiol Lett 313:96–102
Murray AC, Woodward S (2003) In vitro interactions between bacteria isolated from Sitka spruce stumps and Heterobasidion annosum. For Pathol 33:53–67
Nash EE, Peters BM, Palmer GE et al (2014) Morphogenesis is not required for Candida albicans-Staphylococcus aureus intra-abdominal infection-mediated dissemination and lethal sepsis. Infect Immun 82:3426–3435
Nazir R, Tazetdinova DI, van Elsas JD (2014) Burkholderia terrae BS001 migrates proficiently with diverse fungal hosts through soil and provides protection from antifungal agents. Front Microbiol 5:598
Nazir R, Warmink JA, Boersma H, van Elsas JD (2010) Mechanisms that promote bacterial fitness in fungal-affected soil microhabitats. FEMS Microbiol Ecol 71:169–185
Oh DC, Poulsen M, Currie CR, Clardy J (2009) Dentigerumycin: a bacterial mediator of an ant-fungus symbiosis. Nat Chem Biol 5:391–393
Partida-Martinez LP, Hertweck C (2005) Pathogenic fungus harbours endosymbiotic bacteria for toxin production. Nature 437:884–888
Partida-Martinez LP, Hertweck C (2007) A gene cluster encoding rhizoxin biosynthesis in “Burkholderia rhizoxina”, the bacterial endosymbiont of the fungus Rhizopus microsporus. Chembiochem 8:41–45
Peleg AY, Tampakakis E, Fuchs BB et al (2008) Prokaryote-eukaryote interactions identified by using Caenorhabditis elegans. Proc Natl Acad Sci U S A 105:14585–14590
Phelan VV, Moree WJ, Aguilar J et al (2014) Impact of a transposon insertion in phzF2 on the specialized metabolite production and interkingdom interactions of Pseudomonas aeruginosa. J Bacteriol 196:1683–1693
Pinto-Tomas AA, Anderson MA, Suen G, Stevenson DM, Chu FS, Cleland WW, Weimer PJ, Currie CR (2009) Symbiotic nitrogen fixation in the fungus gardens of leaf-cutter ants. Science 326:1120–1123
Pion M, Spangenberg JE, Simon A, Bindschedler S, Flury C, Chatelain A, Bshary R, Job D, Junier P (2013) Bacterial farming by the fungus Morchella crassipes. Proc Biol Sci 280:2013–2242
Ramírez Granillo A, Canales MG, Espíndola ME, Martínez Rivera MA, de Lucio VM, Tovar AV (2015) Antibiosis interaction of Staphylococccus aureus on Aspergillus fumigatus assessed in vitro by mixed biofilm formation. BMC Microbiol 15:363
Ranjard L, Dequiedt S, Chemidlin Prévost-Bouré N et al (2013) Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity. Nat Commun 4:1434
Requena N, Jimenez I, Toro M, Barea JM (1997) Interactions between plant growth promoting rhizobacteria (PGPR), arbuscular mycorrhizal fungi and Rhizobium spp. in the rhizosphere of Anthyllis cytisoides, a model legume for revegetation in mediterranean semi-arid ecosystems. New Phytol 136:667–677
Reybroeck W, De Vleeschouwer M, Marchand S, Sinnaeve D, Heylen K, De Block J, Madder A, Martins JC, Heyndrickx M (2014) Cyclic lipodepsipeptides produced by Pseudomonas spp. naturally present in raw milk induce inhibitory effects on microbiological inhibitor assays for antibiotic residue screening. PLoS One 9, e98266
Riedlinger J, Schrey SD, Tarkka MT, Hampp R, Kapur M, Fiedler HP (2006) Auxofuran, a novel metabolite that stimulates the growth of fly agaric, is produced by the mycorrhiza helper bacterium Streptomyces strain AcH 505. Appl Environ Microbiol 72:3550–3557
Rikhvanov EG, Varakina NN, Sozinov DY, Voinikov VK (1999) Association of bacteria and yeasts in hot springs. Appl Environ Microbiol 65:4292–4293
Romano JD, Kolter R (2005) Pseudomonas-Saccharomyces interactions: influence of fungal metabolism on bacterial physiology and survival. J Bacteriol 187:940–948
Schamfuss S, Neu TR, van der Meer JR, Tecon R, Harms H, Wick LY (2013) Impact of mycelia on the accessibility of fluorene to PAH-degrading bacteria. Environ Sci Technol 47:6908–6915
Scherlach K, Graupner K, Hertweck C (2013) Molecular bacteria-fungi interactions: effects on environment, food, and medicine. Annu Rev Microbiol 67:375–397
Schoenian I, Spiteller M, Ghaste M, Wirth R, Herz H, Spiteller D (2011) Chemical basis of the synergism and antagonism in microbial communities in the nests of leaf-cutting ants. Proc Natl Acad Sci U S A 108:1955–1960
Schrey SD, Salo V, Raudaskoski M, Hampp R, Nehls U, Tarkka MT (2007) Interaction with mycorrhiza helper bacterium Streptomyces sp. AcH 505 modies organisation of actin cytoskeleton in the ectomycorrhizal fungus Amanita muscaria (fly agaric). Curr Genet 52:77–85
Schrey SD, Schellhammer M, Ecke M, Hampp R, Tarkka MT (2005) Mycorrhization helper bacterium Streptomyces AcH 505 induces differential gene expression in the ectomycorrhizal fungus Amanita muscaria. New Phytol 168:205–216
Schroeckh V, Scherlach K, Nützmann HW, Shelest E, Schmidt-Heck W, Schuemann J, Martin K, Hertweck C, Brakhage AA (2009) Intimate bacterial-fungal interaction triggers biosynthesis of archetypal polyketides in Aspergillus nidulans. Proc Natl Acad Sci U S A 106:14558–14563
Silverman RJ, Nobbs AH, Vickerman MM, Barbour ME, Jenkinson HF (2010) Interaction of Candida albicans cell wall Als3 protein with Streptococcus gordonii SspB adhesin promotes development of mixed-species communities. Infect Immun 78:4644–4652
Stanley CE, Stöckli M, van Swaay D et al (2014) Probing bacterial-fungal interactions at the single cell level. Integr Biol 6:935–945
Sztajer H, Szafranski SP, Tomasch J, Reck M, Nimtz M, Rohde M, Wagner-Döbler I (2014) Cross-feeding and interkingdom communication in dual-species biofilms of Streptococcus mutans and Candida albicans. ISME J 8:2256–2271
Tarkka MT, Herrmann S, Wubet T, Feldhahn L, Recht S, Kurth F, Mailänder S, Bönn M, Neef M, Angay O, Bacht M, Graf M, Maboreke H, Fleischmann F, Grams TE, Ruess L, Schädler M, Brandl R, Scheu S, Schrey SD, Grosse I, Buscot F (2013) OakContigDF159.1, a reference library for studying differential gene expression in Quercus robur during controlled biotic interactions: use for quantitative transcriptomic profiling of oak roots in ectomycorrhizal symbiosis. New Phytol 199:529–540
Tarkka MT, Sarniguet A, Frey-Klett P (2009) Inter-kingdom encounters: recent advances in molecular bacterium-fungus interactions. Curr Genet 55:233–243
Tsukamoto T, Murata H, Shirata A (2002) Identification of non-pseudomonad bacteria from fruit bodies of wild agaricales fungi that detoxify tolaasin produced by Pseudomonas tolaasii. Biosci Biotechnol Biochem 66:2201–2208
Valásková V, de Boer W, Gunnewiek PJ, Pospísek M, Baldrian P (2009) Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood. ISME J 3:1218–1221
Valera MJ, Torija MJ, Mas A, Mateo E (2015) Acetic acid bacteria from biofilm of strawberry vinegar visualized by microscopy and detected by complementing culture-dependent and culture-independent techniques. Food Microbiol 46:452–462
Valm AM, Welch JLM, Rieken CW et al (2011) Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging. Proc Natl Acad Sci U S A 108:4152–4157
van Rij ET, Girard G, Lugtenberg BJ, Bloemberg GV (2005) Influence of fusaric acid on phenazine-1-carboxamide synthesis and gene expression of Pseudomonas chlororaphis strain PCL1391. Microbiology 151:2805–2814
Vieira FCS, Nahas E (2005) Comparison of microbial numbers in soils by using various culture media and temperatures. Microbiol Res 160:197–202
Viollet A, Corberand T, Mougel C et al (2011) Fluorescent pseudomonads harboring type III secretion genes are enriched in the mycorrhizosphere of Medicago truncatula. FEMS Microbiol Ecol 75:457–67
Wallace DF, Cook SR, Dickinson DJ (2008) The role of non-decay microorganisms in the degradation of organic wood preservatives. Dev Commer Wood Preserv 982:312–322
Wargo MJ, Hogan DA (2006) Fungal-bacterial interactions: a mixed bag of mingling microbes. Curr Opin Microbiol 9:359–364
Warmink JA, Nazir R, van Elsas JD (2009) Universal and species-specific bacterial ‘fungiphiles’ in the mycospheres of different basidiomycetous fungi. Environ Microbiol 11:300–312
Warmink JA, van Elsas JD (2008) Selection of bacterial populations in the mycosphere of Laccaria proxima: is type III secretion involved? ISME J 2:887–900
White C, Wilkinson SC, Gadd GM (1995) The role of microorganisms in biosorption of toxic metals and radionuclide. Int Biodeter Biodegr 35:17–40
Willger SD, Grim SL, Dolben EL et al (2014) Characterization and quantification of the fungal microbiome in serial samples from individuals with cystic fibrosis. Microbiome 2:40
Wolfe BE, Button JE, Santarelli M, Dutton RJ (2014) Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158:422–433
Xiao J, Klein MI, Falsetta ML, Lu B, Delahunty CM, Yates JR 3rd, Heydorn A, Koo H (2012) The exopolysaccharide matrix modulates the interaction between 3D architecture and virulence of a mixed-species oral biofilm. PLoS Pathog 8, e1002623
Xu XL, Lee RT, Fang HM, Wang YM, Li R, Zou H, Zhu Y, Wang Y (2008) Bacterial peptidoglycan triggers Candida albicans hyphal growth by directly activating the adenylyl cyclase Cyr1p. Cell Host Microbe 4:28–39
Zheng H, Kim J, Liew M, Yan JK, Herrera O, Bok JW, Kelleher NL, Keller NP, Wang Y (2015) Redox metabolites signal polymicrobial biofilm development via the NapA oxidative stress cascade in Aspergillus. Curr Biol 25:29–37
Zhou J, He Z, Yang Y et al (2015) High-throughput metagenomic technologies for complex microbial community analysis: open and closed formats. MBio 6:e02288–14
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Tarkka, M., Deveau, A. (2016). 8 An Emerging Interdisciplinary Field: Fungal–Bacterial Interactions. In: Druzhinina, I., Kubicek, C. (eds) Environmental and Microbial Relationships. The Mycota, vol IV. Springer, Cham. https://doi.org/10.1007/978-3-319-29532-9_8
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