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RadLex Terms and Local Texture Features for Multimodal Medical Case Retrieval

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Book cover Multimodal Retrieval in the Medical Domain (MRDM 2015)

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Abstract

Clinicians searching through the large data sets of multimodal medical information generated in hospitals currently do not fully exploit previous medical cases to retrieve relevant information for a differential diagnosis. The VISCERAL Retrieval benchmark organized a medical case–based retrieval evaluation using a data set composed of patient scans and RadLex term anatomy–pathology lists from the radiologic reports. In this paper a retrieval method for medical cases that uses both textual and visual features is presented. It defines a weighting scheme that combines the RadLex terms anatomical and clinical correlations with the information from local texture features obtained from the region of interest in the query cases. The method implementation, with an innovative 3D Riesz wavelet texture analysis and an approach to generate a common spatial domain to compare medical images is described. The proposed method obtained overall competitive results in the VISCERAL Retrieval benchmark and could be seen as a tool to perform medical case based retrieval in large clinical data sets.

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Notes

  1. 1.

    http://www.visceral.eu/benchmarks/retrieval-benchmark/, as of 1st May 2015.

  2. 2.

    http://www.radlex.org/ , as of 1st may 2015.

  3. 3.

    http://elastix.isi.uu.nl/ , as of 1 May 2015.

  4. 4.

    http://www.visceral.eu/workshops/mrmd-2015/, as of 1st May 2015.

References

  1. Arsigny, V., Fillard, P., Pennec, X., Ayache, N.: Log-euclidean metrics for fast and simple calculus on diffusion tensors. Mag. Reson. Med. 56(2), 411–421 (2006)

    Article  Google Scholar 

  2. Cirujeda, P., Mateo, X., Dicente, Y., Binefa, X.: MCOV: a covariance descriptor for fusion of texture and shape features in 3D point clouds. In: International Conference on 3D vision (3DV) (2014)

    Google Scholar 

  3. Hanbury, A., Müller, H., Langs, G., Weber, M.A., Menze, B.H., Fernandez, T.S.: Bringing the algorithms to the data: cloud–based benchmarking for medical image analysis. In: Catarci, T., Forner, P., Hiemstra, D., Peñas, A., Santucci, G. (eds.) CLEF 2012. LNCS, vol. 7488, pp. 24–29. Springer, Heidelberg (2012)

    Google Scholar 

  4. de Herrera, A.G.S., Foncubierta-Rodríguez, A., Müller, H.: Medical case-based retrieval: integrating query MeSH terms for query-adaptive multi-modal fusion. In: SPIE Medical Imaging. International Society for Optics and Photonics (2015)

    Google Scholar 

  5. de Herrera, A.G.S., Kalpathy-Cramer, J., Fushman, D.D., Antani, S., Müller, H.: Overview of the imageCLEF 2013 medical tasks. In: Working Notes of CLEF 2013 (Cross Language Evaluation Forum), September 2013

    Google Scholar 

  6. Klein, S., Pluim, J.P., Staring, M., Viergever, M.A.: Adaptive stochastic gradient descent optimisation for image registration. Int. J. Comput. Vis. 81(3), 227–239 (2009)

    Article  Google Scholar 

  7. Klein, S., Staring, M., Murphy, K., Viergever, M.A., Pluim, J.P.: Elastix: a toolbox for intensity-based medical image registration. IEEE Trans. Med. Imag. 29(1), 196–205 (2010)

    Article  Google Scholar 

  8. Kurtz, C., Depeursinge, A., Napel, S., Beaulieu, C.F., Rubin, D.L.: On combining visual and ontological similarities for medical image retrieval applications. Med. Image Anal. 18(7),1082-100 (2014)

    Google Scholar 

  9. Langlotz, C.P.: Radlex: a new method for indexing online educational materials. Radiographics 26(6), 1595–1597 (2006)

    Article  Google Scholar 

  10. Langs, G., Hanbury, A., Menze, B., Müller, H.: VISCERAL: towards large data in medical imaging — challenges and directions. In: Greenspan, H., Müller, H., Syeda-Mahmood, T. (eds.) MCBR-CDS 2012. LNCS, vol. 7723, pp. 92–98. Springer, Heidelberg (2013)

    Chapter  Google Scholar 

  11. Müller, H., Michoux, N., Bandon, D., Geissbuhler, A.: A review of content-based image retrieval systems in medicine-clinical benefits and future directions. Int. J. Med. Inf. 73(1), 1–23 (2004)

    Article  Google Scholar 

  12. Rubin, D., Napel, S.: Imaging informatics: toward capturing and processing semantic information in radiology images. In: Kulikowski, C.A., Geissbuhler, A. (eds.) Yearbook of Medical Informatics, pp. 34–42. Schattauer, Stuttgart (2010)

    Google Scholar 

  13. del Toro, O.A.J., Foncubierta-Rodríguez, A., Depeursinge, A., Müller, H.: Texture classification of anatomical structures in CT using a context-free machine learning approach. In: SPIE Medical Imaging 2015 (2015)

    Google Scholar 

  14. del Toro, O.A.J., Foncubierta-Rodríguez, A., Müller, H., Langs, G., Hanbury, A.: Overview of the VISCERAL retrieval benchmark 2015. In: Müller, H., del Toro, O.A.J, Hanbury, A., Langs, G., Rodriguez, A.F. (eds.) MRMD 2015. LNCS, vol. 9059, pp. 115–123. Springer, Heidelberg (2015)

    Google Scholar 

  15. del Toro, O.A.J., Foncubierta–Rodríguez, A., Vargas Gómez, M.I., Müller, H., Depeursinge, A.: Epileptogenic lesion quantification in MRI using contralateral 3D texture comparisons. In: Mori, K., Sakuma, I., Sato, Y., Barillot, C., Navab, N. (eds.) MICCAI 2013, Part II. LNCS, vol. 8150, pp. 353–360. Springer, Heidelberg (2013)

    Chapter  Google Scholar 

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Acknowledgments

This work was supported by the EU in FP7 through VISCERAL (318068), Khresmoi (257528) and the Swiss National Foundation (SNF grant 205320–141300/1).

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Correspondence to Oscar Alfonso Jiménez–del–Toro .

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Jiménez–del–Toro, O.A., Cirujeda, P., Cid, Y.D., Müller, H. (2015). RadLex Terms and Local Texture Features for Multimodal Medical Case Retrieval. In: Müller, H., Jimenez del Toro, O., Hanbury, A., Langs, G., Foncubierta Rodriguez, A. (eds) Multimodal Retrieval in the Medical Domain. MRDM 2015. Lecture Notes in Computer Science(), vol 9059. Springer, Cham. https://doi.org/10.1007/978-3-319-24471-6_14

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  • DOI: https://doi.org/10.1007/978-3-319-24471-6_14

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