Abstract
Recent years have seen an increased interest in developing genetically modified algae and other microorganisms for use in biofuel and bio-based chemical production. However, this comes at a time when there is uncertainty within the industry and the academic community about how such uses will be regulated by governments in the U.S. and elsewhere in the world, as well as concerns by some observers over the adequacy of existing regulations to cover organisms created using techniques known as synthetic biology. However, a reasonable road map is emerging of a regulatory regime that can allow pilot, demonstration and commercial stage uses of modified microorganisms. In the U.S., regulations of the U.S. Environmental Protection Agency and possibly of the U.S. Department of Agriculture might govern the industrial use of microorganisms in contained photobioreactors or algae in open ponds, and these regulations generally require conducting assessments of the potential environmental risks of such large-scale uses. The EPA regulations include a mechanism by which outdoor experimentation of modified microorganisms can take place in a stepwise approach, with risks assessed as the scale of experimentation increases, which provides an accessible path to exploration of the use of modified algae in open ponds. Such risk assessments will address legitimate questions of potential ecological impact, such as the potential survival and dissemination of the production organism, the potential for heterologous genes to horizontally transfer to indigenous microorganisms, and the chance for other unintended effects on nontarget species. Numerous companies have successfully navigated these regulations, including some recent project approvals in the U.S. and elsewhere in the world.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Notes
- 1.
This is in contrast to most other countries in the world, which have generally created a single national biotechnology (“biosafety”) law, often in compliance with the Cartagena Protocol on Biosafety (see below).
- 2.
EPA developed regulations under the U.S. pesticide law (the Federal Insecticide, Fungicide and Rodenticide act; FIFRA) to regulate proposed uses of modified and unmodified microorganisms as biopesticides. These regulations encompass risk assessments similar to those discussed in this chapter, but pesticides and other agricultural uses of microorganisms are outside this chapter’s focus on fuels and chemicals. See references such as Glass (2003) or Wozniak et al. (2012) for more details on FIFRA biopesticide regulation.
- 3.
USDA now has potentially broader regulatory ability. In 2000, the Plant Pest Act, the law on which the Part 340 regulations was based, was combined with other statutes to create a new law, the Agriculture Risk Protection Act, which includes language that could give USDA the ability to regulate modified organisms based on potential invasiveness or weediness. In 2008, USDA published some possible options to amend the regulations to accomplish this, but to date the Department has never proposed any specific regulations for this purpose.
- 4.
The author has consulted for Mascoma in the past, but at this writing has no financial interest in this company.
- 5.
The author coordinated the preparation of Joule’s MCAN and handled all interactions with EPA during its review of the filing, while employed by Joule Unlimited. The author also declares a financial interest in this company.
References
Adrio J-L, Demain AL (2010) Recombinant organisms for production of industrial products. Bioengineered 1(2):116–131
Alexander M (1985) Genetic engineering: ecological consequences. Issues Sci Technol 1(3):57–68
Bergeson LL, Auer CM, Peveler RD (2012) TSCA and the regulation of renewable chemicals. Ind Biotechnol 8(5):262–271
Bergeson LL, Auer CM, Hernandez O (2014) Creative adaptation: enhancing oversight of synthetic biology under the toxic substances control act. Ind Biotechnol. doi:10.1089/ind.2014.1532
Buschke N, Schafer R, Becker J, Wittmann C (2013) Metabolic engineering of industrial platform microorganisms for biorefinery applications–optimization of substrate spectrum and process robustness by rational and evolutive strategies. Bioresour Technol 135:544–554
BusinessWire (2013) Mascoma announces FDA favorable review of its next generation bioengineered yeast, TransFerm Yield+. http://www.businesswire.com/news/home/20130618006024/en/Mascoma-Announces-FDA-Favorable-Review-Generation-Bioengineered#.VDgUpyldW6U. Accessed 10 Oct 2014
Cao Y, Cao Y, Lin X (2011) Metabolically engineered Escherichia coli for biotechnological production of four-carbon 1,4-dicarboxylic acids. J Ind Microbiol Biotechnol 38(6):649–656
Cao Y, Zhang R, Sun C, Cheng T, Liu Y, Xian M (2013) Fermentative succinate production: an emerging technology to replace the traditional petrochemical processes. Biomed Res Int 2013:723412
Chen Y, Nielsen J (2013) Advances in metabolic pathway and strain engineering paving the way for sustainable production of chemical building blocks. Curr Opin Biotechnol 24(6):965–972
Chen C-H, Sassa Y, Suda E, Watanabe KN (2006) Biosafety system frameworks for living modified organisms in Japan and Taiwan. Plant Biotechnol 23(5):539–546. doi:10.5511/plantbiotechnology.23.539
Chen X, Zhou L, Tian K, Kumar A, Singh S, Prior BA, Wang Z (2013) Metabolic engineering of Escherichia coli: a sustainable industrial platform for bio-based chemical production. Biotechnol Adv 31(8):1200–1223
Colin VL, Rodriguez A, Cristobal HA (2011) The role of synthetic biology in the design of microbial cell factories for biofuel production. J Biomed Biotechnol 2011:601834
CTNBIO (2014) Commercial approvals: microorganisms. http://www.ctnbio.gov.br/index.php/content/view/14610.html. Accessed 22 Oct 2014
Dana GV, Kuiken T, Rejeski D, Snow AA (2012) Synthetic biology: four steps to avoid a synthetic-biology disaster. Nature 483(7387):29
Danish K, Epifani LE, Zevin A (2014) Inventory of Federal Regulations Affecting Biofuels other than the Renewable Fuel Standard. VanNess Feldman, LLP. http://bipartisanpolicy.org/sites/default/files/files/VNF_Biofuels.pdf. Accessed 16 Oct 2014
Darch H, Shahsavarani A (2012) The regulation of organisms used in agriculture under the Canadian Environmental Protection Act, 1999. In: McHughen A, Wozniak CA (eds) Regulation of agricultural biotechnology: the United States and Canada. Springer, Dordrecht, pp 137–145. doi:10.1007/978-94-007-2156-2_8
Davison J (2005) Risk mitigation of genetically modified bacteria and plants designed for bioremediation. J Ind Microbiol Biotechnol 32(11–12):639–650
de Jong B, Siewers V, Nielsen J (2012) Systems biology of yeast: enabling technology for development of cell factories for production of advanced biofuels. Curr Opin Biotechnol 23(4):624–630. doi:10.1016/j.copbio.2011.11.021
Dellomonaco C, Fava F, Gonzalez R (2010) The path to next generation biofuels: successes and challenges in the era of synthetic biology. Microb Cell Fact 9:3
Eggers B, Mackenzie R (2000) The Cartagena protocol on biosafety. J Int Econ Law 3(3):525–543. doi:10.1093/jiel/3.3.525
Environment Canada (2014) Biotechnology (living organisms) risk assessment decisions. http://www.ec.gc.ca/subsnouvelles-newsubs/default.asp?lang=En&n=8AD6A8C1-1. Accessed 22 Oct 2014
Enzing CN, Nooijen A (2012) Algae and genetic modification. Research, production and risks, COGEM
European Union (2001) Directive 2001/18/EC of the European Parliament and of the Council of 12 March 2001 on the deliberate release into the environment of genetically modified organisms. http://eur-lex.europa.eu/legal-content/EN/TXT/?uri=CELEX:32001L0018. Accessed 23 Sept 2014
European Union (2009) Directive 2009/41/EC of the European Parliament and of the Council of 6 May 2009 on the contained use of genetically modified micro-organisms. http://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2009:125:0075:0097:EN:PDF. Accessed 23 Sept 2014
Glaser A, Glick P (2012) Growing risk: addressing the invasive potential of bioenergy feedstocks. National Wildlife Federation, Washington, DC
Glass DJ (1991) Chapter 10: Impact of government regulation on commercial biotechnology. In: Ono RD (ed) Business of biotechnology, Newnes, Boston, pp 169–198, doi:http://dx.doi.org/10.1016/B978-0-7506-9119-2.50017-4
Glass DJ (1995) Biotic effects of soil microbial amendments. In: Rechcigl JE (ed) Soil amendments: impacts on biotic systems. Lewis Publishers, Boca Raton, pp 251–303
Glass DJ (2003) Regulation of the commercial uses of microorganisms. In: Encyclopedia of environmental microbiology, Wiley, New York. doi:10.1002/0471263397.env018
Golden JS, Handfield RB (2014) Why biobased? Opportunities in the emerging bioeconomy. U.S. Department of Agriculture, http://www.biopreferred.gov/files/WhyBiobased.pdf. Accessed 13 Oct 2014
Gressel J, van der Vlugt CJB, Bergmans HEN (2013) Environmental risks of large scale cultivation of microalgae: mitigation of spills. Algal Res 2(3):286–298, http://dx.doi.org/10.1016/j.algal.2013.04.002
Gressel J, van der Vlugt CJ, Bergmans HE (2014) Cultivated microalgae spills: hard to predict/easier to mitigate risks. Trends Biotechnol 32(2):65–69. doi:10.1016/j.tibtech.2013.11.003
Gupta A, Falkner R (2006) The influence of the Cartagena protocol on biosafety: comparing Mexico, China and South Africa. Global Environ Polit 6(4):23–55. doi:10.1162/glep.2006.6.4.23
He MX, Wu B, Qin H, Ruan ZY, Tan FR, Wang JL, Shui ZX, Dai LC, Zhu QL, Pan K, Tang XY, Wang WG, Hu QC (2014) Zymomonas mobilis: a novel platform for future biorefineries. Biotechnol Biofuels 7:101
Henley WJ, Litaker RW, Novoveská L, Duke CS, Quemada HD, Sayre RT (2013) Initial risk assessment of genetically modified (GM) microalgae for commodity-scale biofuel cultivation. Algal Res 2(1):66–77, http://dx.doi.org/10.1016/j.algal.2012.11.001
Hong KK, Nielsen J (2012) Metabolic engineering of Saccharomyces cerevisiae: a key cell factory platform for future biorefineries. Cell Mol Life Sci 69(16):2671–2690
Jang YS, Park JM, Choi S, Choi YJ, Seung Do Y, Cho JH, Lee SY (2012) Engineering of microorganisms for the production of biofuels and perspectives based on systems metabolic engineering approaches. Biotechnol Adv 30(5)):989–1000
Jones CS, Mayfield SP (2012) Algae biofuels: versatility for the future of bioenergy. Curr Opin Biotechnol 23(3):346–351. doi:10.1016/j.copbio.2011.10.013
Krimsky S (1985) Genetic alchemy: the social history of the recombinant DNA controversy. The MIT Press, Cambridge, MA
Kung Y, Runguphan W, Keasling JD (2012) From fields to fuels: recent advances in the microbial production of biofuels. ACS Synth Biol 1(11):498–513. doi:10.1021/sb300074k
Larkum AW, Ross IL, Kruse O, Hankamer B (2012) Selection, breeding and engineering of microalgae for bioenergy and biofuel production. Trends Biotechnol 30(4):198–205. doi:10.1016/j.tibtech.2011.11.003
Lennen RM, Pfleger BF (2012) Engineering Escherichia coli to synthesize free fatty acids. Trends Biotechnol 30(12):659–667
Lennen RM, Pfleger BF (2013) Microbial production of fatty acid-derived fuels and chemicals. Curr Opin Biotechnol 24(6):1044–1053
Menetrez MY (2012) An overview of algae biofuel production and potential environmental impact. Environ Sci Technol 46(13):7073–7085. doi:10.1021/es300917r
Nielsen J, Larsson C, van Maris A, Pronk J (2013) Metabolic engineering of yeast for production of fuels and chemicals. Curr Opin Biotechnol 24(3):398–404
Nozzi NE, Oliver JW, Atsumi S (2013) Cyanobacteria as a platform for biofuel production. Front Bioeng Biotechnol 1:7
OSTP (1986) Coordinated framework for regulation of biotechnology. Fed Regist 51:23302–23393
Peralta-Yahya PP, Keasling JD (2010) Advanced biofuel production in microbes. Biotechnol J 5(2):147–162
Radakovits R, Jinkerson RE, Darzins A, Posewitz MC (2010) Genetic engineering of algae for enhanced biofuel production. Eukaryot Cell 9(4):486–501. doi:10.1128/ec.00364-09
Rosenberg JN, Oyler GA, Wilkinson L, Betenbaugh MJ (2008) A green light for engineered algae: redirecting metabolism to fuel a biotechnology revolution. Curr Opin Biotechnol 19(5):430–436. doi:10.1016/j.copbio.2008.07.008
Rosgaard L, de Porcellinis AJ, Jacobsen JH, Frigaard NU, Sakuragi Y (2012) Bioengineering of carbon fixation, biofuels, and biochemicals in cyanobacteria and plants. J Biotechnol 162(1):134–147. doi:10.1016/j.jbiotec.2012.05.006
Ryan C (2009) Cultivating clean energy: the promise of algae biofuels. National Resources Defense Council, Washington, DC
Sayler GS, Ripp S (2000) Field applications of genetically engineered microorganisms for bioremediation processes. Curr Opin Biotechnol 11(3):286–289
Singh JS, Abhilash PC, Singh HB, Singh RP, Singh DP (2011) Genetically engineered bacteria: an emerging tool for environmental remediation and future research perspectives. Gene 480(1–2):1–9
Slating TA, Kesan JP (2012) A legal analysis of the effects of the Renewable Fuel Standard (RFS2) and Clean Air Act on the commercialization of biobutanol as a transportation fuel in the United States. GCB Bioenergy 4(2):107–118. doi:10.1111/j.1757-1707.2011.01146.x
Snow AA, Smith VH (2012) Genetically engineered algae for biofuels: a key role for ecologists. Bioscience 62(8):765–768. doi:10.1525/bio.2012.62.8.9
Tiedje JM, Colwell RK, Grossman YL, Hodson RE, Lenski RE, Mack RN, Regal PJ (1989) The planned introduction of genetically engineered organisms: ecological considerations and recommendations. Ecology 70(2):298–315
Trentacoste EM, Martinez AM, Zenk T (2014) The place of algae in agriculture: policies for algal biomass production. Photosynth Res. doi:10.1007/s11120-014-9985-8
Tribe D (2012) Gene technology regulation in Australia: a decade of a federal implementation of a statutory legal code in a context of constituent states taking divergent positions. GM Crops Food: Biotechnol Agric Food Chain 3(1):21–29
Urgun-Demirtas M, Stark B, Pagilla K (2006) Use of Genetically Engineered Microorganisms (GEMs) for the bioremediation of contaminants. Crit Rev Biotechnol 26(3):145–164. doi:10.1080/07388550600842794
USDA (1987) Introduction of genetically engineered organisms. Fed Regist 52:22892–22915
USDA (1993) Notification procedures for the introduction of certain regulated articles. Fed Regist 58:17044–17059
USDA (1997) Simplification of requirements and procedures for genetically engineered organisms. Fed Regist 62:23945–23958
USDOE (2010) National algal biofuels technology roadmap. U.S. Dept. of Energy, Office of Energy Efficiency and Renewable Energy, Washington, DC
USDOE (2013) Replacing the whole barrel to reduce U.S. dependence on oil. http://www.energy.gov/sites/prod/files/2014/04/f14/replacing_barrel_overview.pdf. Accessed 20 Oct 2014
USEPA (1997a) Fact sheet: commercialization of Sinorhizobium (Rhizobium) Meliloti, RMBPC-2. http://www.epa.gov/biotech_rule/pubs/factdft6.htm. Accessed 23 Sept 2014
USEPA (1997b) Microbial products of biotechnology; final regulation under the Toxic Substances Control Act. Fed Regist 62:17910–17958
USEPA (1997c) Points to consider in the preparation of TSCA biotechnology submissions for microorganisms. http://www.epa.gov/oppt/biotech/pubs/pdf/ptcbio.pdf. Accessed 23 Sept 2014
USEPA (1997d) Regulatory impact analysis for the regulation of microbial products of biotechnology: the regulated community. http://www.epa.gov/oppt/biotech/pubs/ria/ria013.htm. Accessed 23 Sept 2014
USEPA (2012) Microorganisms; general exemptions from reporting requirements; revisions to recipient organisms eligible for tier I and tier II exemptions. Fed Regist 77:54499–54511
USEPA (2014) TSCA Biotechnology notifications, FY 1998 to present. http://www.epa.gov/biotech_rule/pubs/submiss.htm. Accessed 23 Oct 2014
USFDA (2014) Generally Recognized as Safe (GRAS) notification program. http://www.fda.gov/AnimalVeterinary/Products/AnimalFoodFeeds/GenerallyRecognizedasSafeGRASNotifications/default.htm. Accessed 23 Sept 2014
Viebahn M, Smit E, Glandorf DM, Wernars K, Bakker PHM (2009) Effect of genetically modified bacteria on ecosystems and their potential benefits for bioremediation and biocontrol of plant diseases – a review. In: Lichtfouse E (ed) Climate change, intercropping, pest control and beneficial microorganisms, vol 2, Sustainable Agriculture Reviews. Springer, Dordrecht, pp 45–69. doi:10.1007/978-90-481-2716-0_4
Work VH, D’Adamo S, Radakovits R, Jinkerson RE, Posewitz MC (2012) Improving photosynthesis and metabolic networks for the competitive production of phototroph-derived biofuels. Curr Opin Biotechnol 23(3):290–297. doi:10.1016/j.copbio.2011.11.022
Wozniak C, McClung G, Gagliardi J, Segal M, Matthews K (2012) Regulation of genetically engineered microorganisms under FIFRA, FFDCA and TSCA. In: McHughen A, Wozniak CA (eds) Regulation of agricultural biotechnology: the United States and Canada. Springer, Dordrecht, pp 57–94. doi:10.1007/978-94-007-2156-2_4
Wrubel RP, Krimsky S, Anderson MD (1997) Regulatory oversight of genetically engineered microorganisms: has regulation inhibited innovation? Environ Manage 21(4):571–586
Yamanouchi K (2005) Regulatory considerations in the development and application of biotechnology in Japan. Rev Sci Tech 24(1):109–115
Yu C, Cao Y, Zou H, Xian M (2011) Metabolic engineering of Escherichia coli for biotechnological production of high-value organic acids and alcohols. Appl Microbiol Biotechnol 89(3):573–583
Zhang F, Rodriguez S, Keasling JD (2011) Metabolic engineering of microbial pathways for advanced biofuels production. Curr Opin Biotechnol 22(6):775–783
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
List of Acronyms
List of Acronyms
- EPA:
-
U.S. Environmental Protection Agency
- FDA:
-
U.S. Food and Drug Administration
- GMM:
-
Genetically Modified Microorganism
- GMO:
-
Genetically Modified Organism
- LMO:
-
Living Modified Organism
- MCAN:
-
Microbial Commercial Activity Notice
- PMN:
-
Premanufacture Notice
- TERA:
-
TSCA Experimental Release Application
- TSCA:
-
Toxic Substances Control Act
- USDA:
-
U.S. Department of Agriculture
Rights and permissions
Copyright information
© 2015 Springer International Publishing Switzerland
About this chapter
Cite this chapter
Glass, D.J. (2015). Government Regulation of the Uses of Genetically Modified Algae and Other Microorganisms in Biofuel and Bio-based Chemical Production. In: Prokop, A., Bajpai, R., Zappi, M. (eds) Algal Biorefineries. Springer, Cham. https://doi.org/10.1007/978-3-319-20200-6_2
Download citation
DOI: https://doi.org/10.1007/978-3-319-20200-6_2
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-20199-3
Online ISBN: 978-3-319-20200-6
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)