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Government Regulation of the Uses of Genetically Modified Algae and Other Microorganisms in Biofuel and Bio-based Chemical Production

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Book cover Algal Biorefineries

Abstract

Recent years have seen an increased interest in developing genetically modified algae and other microorganisms for use in biofuel and bio-based chemical production. However, this comes at a time when there is uncertainty within the industry and the academic community about how such uses will be regulated by governments in the U.S. and elsewhere in the world, as well as concerns by some observers over the adequacy of existing regulations to cover organisms created using techniques known as synthetic biology. However, a reasonable road map is emerging of a regulatory regime that can allow pilot, demonstration and commercial stage uses of modified microorganisms. In the U.S., regulations of the U.S. Environmental Protection Agency and possibly of the U.S. Department of Agriculture might govern the industrial use of microorganisms in contained photobioreactors or algae in open ponds, and these regulations generally require conducting assessments of the potential environmental risks of such large-scale uses. The EPA regulations include a mechanism by which outdoor experimentation of modified microorganisms can take place in a stepwise approach, with risks assessed as the scale of experimentation increases, which provides an accessible path to exploration of the use of modified algae in open ponds. Such risk assessments will address legitimate questions of potential ecological impact, such as the potential survival and dissemination of the production organism, the potential for heterologous genes to horizontally transfer to indigenous microorganisms, and the chance for other unintended effects on nontarget species. Numerous companies have successfully navigated these regulations, including some recent project approvals in the U.S. and elsewhere in the world.

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Notes

  1. 1.

    This is in contrast to most other countries in the world, which have generally created a single national biotechnology (“biosafety”) law, often in compliance with the Cartagena Protocol on Biosafety (see below).

  2. 2.

    EPA developed regulations under the U.S. pesticide law (the Federal Insecticide, Fungicide and Rodenticide act; FIFRA) to regulate proposed uses of modified and unmodified microorganisms as biopesticides. These regulations encompass risk assessments similar to those discussed in this chapter, but pesticides and other agricultural uses of microorganisms are outside this chapter’s focus on fuels and chemicals. See references such as Glass (2003) or Wozniak et al. (2012) for more details on FIFRA biopesticide regulation.

  3. 3.

    USDA now has potentially broader regulatory ability. In 2000, the Plant Pest Act, the law on which the Part 340 regulations was based, was combined with other statutes to create a new law, the Agriculture Risk Protection Act, which includes language that could give USDA the ability to regulate modified organisms based on potential invasiveness or weediness. In 2008, USDA published some possible options to amend the regulations to accomplish this, but to date the Department has never proposed any specific regulations for this purpose.

  4. 4.

    The author has consulted for Mascoma in the past, but at this writing has no financial interest in this company.

  5. 5.

    The author coordinated the preparation of Joule’s MCAN and handled all interactions with EPA during its review of the filing, while employed by Joule Unlimited. The author also declares a financial interest in this company.

References

  • Adrio J-L, Demain AL (2010) Recombinant organisms for production of industrial products. Bioengineered 1(2):116–131

    Article  Google Scholar 

  • Alexander M (1985) Genetic engineering: ecological consequences. Issues Sci Technol 1(3):57–68

    Google Scholar 

  • Bergeson LL, Auer CM, Peveler RD (2012) TSCA and the regulation of renewable chemicals. Ind Biotechnol 8(5):262–271

    Article  Google Scholar 

  • Bergeson LL, Auer CM, Hernandez O (2014) Creative adaptation: enhancing oversight of synthetic biology under the toxic substances control act. Ind Biotechnol. doi:10.1089/ind.2014.1532

    Google Scholar 

  • Buschke N, Schafer R, Becker J, Wittmann C (2013) Metabolic engineering of industrial platform microorganisms for biorefinery applications–optimization of substrate spectrum and process robustness by rational and evolutive strategies. Bioresour Technol 135:544–554

    Article  CAS  PubMed  Google Scholar 

  • BusinessWire (2013) Mascoma announces FDA favorable review of its next generation bioengineered yeast, TransFerm Yield+. http://www.businesswire.com/news/home/20130618006024/en/Mascoma-Announces-FDA-Favorable-Review-Generation-Bioengineered#.VDgUpyldW6U. Accessed 10 Oct 2014

  • Cao Y, Cao Y, Lin X (2011) Metabolically engineered Escherichia coli for biotechnological production of four-carbon 1,4-dicarboxylic acids. J Ind Microbiol Biotechnol 38(6):649–656

    Article  CAS  PubMed  Google Scholar 

  • Cao Y, Zhang R, Sun C, Cheng T, Liu Y, Xian M (2013) Fermentative succinate production: an emerging technology to replace the traditional petrochemical processes. Biomed Res Int 2013:723412

    PubMed Central  PubMed  Google Scholar 

  • Chen Y, Nielsen J (2013) Advances in metabolic pathway and strain engineering paving the way for sustainable production of chemical building blocks. Curr Opin Biotechnol 24(6):965–972

    Article  CAS  PubMed  Google Scholar 

  • Chen C-H, Sassa Y, Suda E, Watanabe KN (2006) Biosafety system frameworks for living modified organisms in Japan and Taiwan. Plant Biotechnol 23(5):539–546. doi:10.5511/plantbiotechnology.23.539

    Article  Google Scholar 

  • Chen X, Zhou L, Tian K, Kumar A, Singh S, Prior BA, Wang Z (2013) Metabolic engineering of Escherichia coli: a sustainable industrial platform for bio-based chemical production. Biotechnol Adv 31(8):1200–1223

    Article  CAS  PubMed  Google Scholar 

  • Colin VL, Rodriguez A, Cristobal HA (2011) The role of synthetic biology in the design of microbial cell factories for biofuel production. J Biomed Biotechnol 2011:601834

    Article  PubMed Central  PubMed  Google Scholar 

  • CTNBIO (2014) Commercial approvals: microorganisms. http://www.ctnbio.gov.br/index.php/content/view/14610.html. Accessed 22 Oct 2014

  • Dana GV, Kuiken T, Rejeski D, Snow AA (2012) Synthetic biology: four steps to avoid a synthetic-biology disaster. Nature 483(7387):29

    Article  CAS  PubMed  Google Scholar 

  • Danish K, Epifani LE, Zevin A (2014) Inventory of Federal Regulations Affecting Biofuels other than the Renewable Fuel Standard. VanNess Feldman, LLP. http://bipartisanpolicy.org/sites/default/files/files/VNF_Biofuels.pdf. Accessed 16 Oct 2014

  • Darch H, Shahsavarani A (2012) The regulation of organisms used in agriculture under the Canadian Environmental Protection Act, 1999. In: McHughen A, Wozniak CA (eds) Regulation of agricultural biotechnology: the United States and Canada. Springer, Dordrecht, pp 137–145. doi:10.1007/978-94-007-2156-2_8

    Chapter  Google Scholar 

  • Davison J (2005) Risk mitigation of genetically modified bacteria and plants designed for bioremediation. J Ind Microbiol Biotechnol 32(11–12):639–650

    Article  CAS  PubMed  Google Scholar 

  • de Jong B, Siewers V, Nielsen J (2012) Systems biology of yeast: enabling technology for development of cell factories for production of advanced biofuels. Curr Opin Biotechnol 23(4):624–630. doi:10.1016/j.copbio.2011.11.021

    Article  PubMed  Google Scholar 

  • Dellomonaco C, Fava F, Gonzalez R (2010) The path to next generation biofuels: successes and challenges in the era of synthetic biology. Microb Cell Fact 9:3

    Article  PubMed Central  PubMed  Google Scholar 

  • Eggers B, Mackenzie R (2000) The Cartagena protocol on biosafety. J Int Econ Law 3(3):525–543. doi:10.1093/jiel/3.3.525

    Article  Google Scholar 

  • Environment Canada (2014) Biotechnology (living organisms) risk assessment decisions. http://www.ec.gc.ca/subsnouvelles-newsubs/default.asp?lang=En&n=8AD6A8C1-1. Accessed 22 Oct 2014

  • Enzing CN, Nooijen A (2012) Algae and genetic modification. Research, production and risks, COGEM

    Google Scholar 

  • European Union (2001) Directive 2001/18/EC of the European Parliament and of the Council of 12 March 2001 on the deliberate release into the environment of genetically modified organisms. http://eur-lex.europa.eu/legal-content/EN/TXT/?uri=CELEX:32001L0018. Accessed 23 Sept 2014

  • European Union (2009) Directive 2009/41/EC of the European Parliament and of the Council of 6 May 2009 on the contained use of genetically modified micro-organisms. http://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2009:125:0075:0097:EN:PDF. Accessed 23 Sept 2014

  • Glaser A, Glick P (2012) Growing risk: addressing the invasive potential of bioenergy feedstocks. National Wildlife Federation, Washington, DC

    Google Scholar 

  • Glass DJ (1991) Chapter 10: Impact of government regulation on commercial biotechnology. In: Ono RD (ed) Business of biotechnology, Newnes, Boston, pp 169–198, doi:http://dx.doi.org/10.1016/B978-0-7506-9119-2.50017-4

  • Glass DJ (1995) Biotic effects of soil microbial amendments. In: Rechcigl JE (ed) Soil amendments: impacts on biotic systems. Lewis Publishers, Boca Raton, pp 251–303

    Google Scholar 

  • Glass DJ (2003) Regulation of the commercial uses of microorganisms. In: Encyclopedia of environmental microbiology, Wiley, New York. doi:10.1002/0471263397.env018

  • Golden JS, Handfield RB (2014) Why biobased? Opportunities in the emerging bioeconomy. U.S. Department of Agriculture, http://www.biopreferred.gov/files/WhyBiobased.pdf. Accessed 13 Oct 2014

  • Gressel J, van der Vlugt CJB, Bergmans HEN (2013) Environmental risks of large scale cultivation of microalgae: mitigation of spills. Algal Res 2(3):286–298, http://dx.doi.org/10.1016/j.algal.2013.04.002

    Article  Google Scholar 

  • Gressel J, van der Vlugt CJ, Bergmans HE (2014) Cultivated microalgae spills: hard to predict/easier to mitigate risks. Trends Biotechnol 32(2):65–69. doi:10.1016/j.tibtech.2013.11.003

    Article  CAS  PubMed  Google Scholar 

  • Gupta A, Falkner R (2006) The influence of the Cartagena protocol on biosafety: comparing Mexico, China and South Africa. Global Environ Polit 6(4):23–55. doi:10.1162/glep.2006.6.4.23

    Article  Google Scholar 

  • He MX, Wu B, Qin H, Ruan ZY, Tan FR, Wang JL, Shui ZX, Dai LC, Zhu QL, Pan K, Tang XY, Wang WG, Hu QC (2014) Zymomonas mobilis: a novel platform for future biorefineries. Biotechnol Biofuels 7:101

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Henley WJ, Litaker RW, Novoveská L, Duke CS, Quemada HD, Sayre RT (2013) Initial risk assessment of genetically modified (GM) microalgae for commodity-scale biofuel cultivation. Algal Res 2(1):66–77, http://dx.doi.org/10.1016/j.algal.2012.11.001

    Article  Google Scholar 

  • Hong KK, Nielsen J (2012) Metabolic engineering of Saccharomyces cerevisiae: a key cell factory platform for future biorefineries. Cell Mol Life Sci 69(16):2671–2690

    Article  CAS  PubMed  Google Scholar 

  • Jang YS, Park JM, Choi S, Choi YJ, Seung Do Y, Cho JH, Lee SY (2012) Engineering of microorganisms for the production of biofuels and perspectives based on systems metabolic engineering approaches. Biotechnol Adv 30(5)):989–1000

    Article  CAS  PubMed  Google Scholar 

  • Jones CS, Mayfield SP (2012) Algae biofuels: versatility for the future of bioenergy. Curr Opin Biotechnol 23(3):346–351. doi:10.1016/j.copbio.2011.10.013

    Article  CAS  PubMed  Google Scholar 

  • Krimsky S (1985) Genetic alchemy: the social history of the recombinant DNA controversy. The MIT Press, Cambridge, MA

    Google Scholar 

  • Kung Y, Runguphan W, Keasling JD (2012) From fields to fuels: recent advances in the microbial production of biofuels. ACS Synth Biol 1(11):498–513. doi:10.1021/sb300074k

    Article  CAS  PubMed  Google Scholar 

  • Larkum AW, Ross IL, Kruse O, Hankamer B (2012) Selection, breeding and engineering of microalgae for bioenergy and biofuel production. Trends Biotechnol 30(4):198–205. doi:10.1016/j.tibtech.2011.11.003

    Article  CAS  PubMed  Google Scholar 

  • Lennen RM, Pfleger BF (2012) Engineering Escherichia coli to synthesize free fatty acids. Trends Biotechnol 30(12):659–667

    Article  CAS  PubMed  Google Scholar 

  • Lennen RM, Pfleger BF (2013) Microbial production of fatty acid-derived fuels and chemicals. Curr Opin Biotechnol 24(6):1044–1053

    Article  CAS  PubMed  Google Scholar 

  • Menetrez MY (2012) An overview of algae biofuel production and potential environmental impact. Environ Sci Technol 46(13):7073–7085. doi:10.1021/es300917r

    Article  CAS  PubMed  Google Scholar 

  • Nielsen J, Larsson C, van Maris A, Pronk J (2013) Metabolic engineering of yeast for production of fuels and chemicals. Curr Opin Biotechnol 24(3):398–404

    Article  CAS  PubMed  Google Scholar 

  • Nozzi NE, Oliver JW, Atsumi S (2013) Cyanobacteria as a platform for biofuel production. Front Bioeng Biotechnol 1:7

    Article  PubMed Central  PubMed  Google Scholar 

  • OSTP (1986) Coordinated framework for regulation of biotechnology. Fed Regist 51:23302–23393

    Google Scholar 

  • Peralta-Yahya PP, Keasling JD (2010) Advanced biofuel production in microbes. Biotechnol J 5(2):147–162

    Article  CAS  PubMed  Google Scholar 

  • Radakovits R, Jinkerson RE, Darzins A, Posewitz MC (2010) Genetic engineering of algae for enhanced biofuel production. Eukaryot Cell 9(4):486–501. doi:10.1128/ec.00364-09

    Article  PubMed Central  CAS  PubMed  Google Scholar 

  • Rosenberg JN, Oyler GA, Wilkinson L, Betenbaugh MJ (2008) A green light for engineered algae: redirecting metabolism to fuel a biotechnology revolution. Curr Opin Biotechnol 19(5):430–436. doi:10.1016/j.copbio.2008.07.008

    Article  CAS  PubMed  Google Scholar 

  • Rosgaard L, de Porcellinis AJ, Jacobsen JH, Frigaard NU, Sakuragi Y (2012) Bioengineering of carbon fixation, biofuels, and biochemicals in cyanobacteria and plants. J Biotechnol 162(1):134–147. doi:10.1016/j.jbiotec.2012.05.006

    Article  CAS  PubMed  Google Scholar 

  • Ryan C (2009) Cultivating clean energy: the promise of algae biofuels. National Resources Defense Council, Washington, DC

    Google Scholar 

  • Sayler GS, Ripp S (2000) Field applications of genetically engineered microorganisms for bioremediation processes. Curr Opin Biotechnol 11(3):286–289

    Article  CAS  PubMed  Google Scholar 

  • Singh JS, Abhilash PC, Singh HB, Singh RP, Singh DP (2011) Genetically engineered bacteria: an emerging tool for environmental remediation and future research perspectives. Gene 480(1–2):1–9

    Article  CAS  PubMed  Google Scholar 

  • Slating TA, Kesan JP (2012) A legal analysis of the effects of the Renewable Fuel Standard (RFS2) and Clean Air Act on the commercialization of biobutanol as a transportation fuel in the United States. GCB Bioenergy 4(2):107–118. doi:10.1111/j.1757-1707.2011.01146.x

    Article  CAS  Google Scholar 

  • Snow AA, Smith VH (2012) Genetically engineered algae for biofuels: a key role for ecologists. Bioscience 62(8):765–768. doi:10.1525/bio.2012.62.8.9

    Article  Google Scholar 

  • Tiedje JM, Colwell RK, Grossman YL, Hodson RE, Lenski RE, Mack RN, Regal PJ (1989) The planned introduction of genetically engineered organisms: ecological considerations and recommendations. Ecology 70(2):298–315

    Article  Google Scholar 

  • Trentacoste EM, Martinez AM, Zenk T (2014) The place of algae in agriculture: policies for algal biomass production. Photosynth Res. doi:10.1007/s11120-014-9985-8

    PubMed Central  PubMed  Google Scholar 

  • Tribe D (2012) Gene technology regulation in Australia: a decade of a federal implementation of a statutory legal code in a context of constituent states taking divergent positions. GM Crops Food: Biotechnol Agric Food Chain 3(1):21–29

    Article  Google Scholar 

  • Urgun-Demirtas M, Stark B, Pagilla K (2006) Use of Genetically Engineered Microorganisms (GEMs) for the bioremediation of contaminants. Crit Rev Biotechnol 26(3):145–164. doi:10.1080/07388550600842794

    Article  CAS  PubMed  Google Scholar 

  • USDA (1987) Introduction of genetically engineered organisms. Fed Regist 52:22892–22915

    Google Scholar 

  • USDA (1993) Notification procedures for the introduction of certain regulated articles. Fed Regist 58:17044–17059

    Google Scholar 

  • USDA (1997) Simplification of requirements and procedures for genetically engineered organisms. Fed Regist 62:23945–23958

    Google Scholar 

  • USDOE (2010) National algal biofuels technology roadmap. U.S. Dept. of Energy, Office of Energy Efficiency and Renewable Energy, Washington, DC

    Google Scholar 

  • USDOE (2013) Replacing the whole barrel to reduce U.S. dependence on oil. http://www.energy.gov/sites/prod/files/2014/04/f14/replacing_barrel_overview.pdf. Accessed 20 Oct 2014

  • USEPA (1997a) Fact sheet: commercialization of Sinorhizobium (Rhizobium) Meliloti, RMBPC-2. http://www.epa.gov/biotech_rule/pubs/factdft6.htm. Accessed 23 Sept 2014

  • USEPA (1997b) Microbial products of biotechnology; final regulation under the Toxic Substances Control Act. Fed Regist 62:17910–17958

    Google Scholar 

  • USEPA (1997c) Points to consider in the preparation of TSCA biotechnology submissions for microorganisms. http://www.epa.gov/oppt/biotech/pubs/pdf/ptcbio.pdf. Accessed 23 Sept 2014

  • USEPA (1997d) Regulatory impact analysis for the regulation of microbial products of biotechnology: the regulated community. http://www.epa.gov/oppt/biotech/pubs/ria/ria013.htm. Accessed 23 Sept 2014

  • USEPA (2012) Microorganisms; general exemptions from reporting requirements; revisions to recipient organisms eligible for tier I and tier II exemptions. Fed Regist 77:54499–54511

    Google Scholar 

  • USEPA (2014) TSCA Biotechnology notifications, FY 1998 to present. http://www.epa.gov/biotech_rule/pubs/submiss.htm. Accessed 23 Oct 2014

  • USFDA (2014) Generally Recognized as Safe (GRAS) notification program. http://www.fda.gov/AnimalVeterinary/Products/AnimalFoodFeeds/GenerallyRecognizedasSafeGRASNotifications/default.htm. Accessed 23 Sept 2014

  • Viebahn M, Smit E, Glandorf DM, Wernars K, Bakker PHM (2009) Effect of genetically modified bacteria on ecosystems and their potential benefits for bioremediation and biocontrol of plant diseases – a review. In: Lichtfouse E (ed) Climate change, intercropping, pest control and beneficial microorganisms, vol 2, Sustainable Agriculture Reviews. Springer, Dordrecht, pp 45–69. doi:10.1007/978-90-481-2716-0_4

    Chapter  Google Scholar 

  • Work VH, D’Adamo S, Radakovits R, Jinkerson RE, Posewitz MC (2012) Improving photosynthesis and metabolic networks for the competitive production of phototroph-derived biofuels. Curr Opin Biotechnol 23(3):290–297. doi:10.1016/j.copbio.2011.11.022

    Article  CAS  PubMed  Google Scholar 

  • Wozniak C, McClung G, Gagliardi J, Segal M, Matthews K (2012) Regulation of genetically engineered microorganisms under FIFRA, FFDCA and TSCA. In: McHughen A, Wozniak CA (eds) Regulation of agricultural biotechnology: the United States and Canada. Springer, Dordrecht, pp 57–94. doi:10.1007/978-94-007-2156-2_4

    Chapter  Google Scholar 

  • Wrubel RP, Krimsky S, Anderson MD (1997) Regulatory oversight of genetically engineered microorganisms: has regulation inhibited innovation? Environ Manage 21(4):571–586

    Article  PubMed  Google Scholar 

  • Yamanouchi K (2005) Regulatory considerations in the development and application of biotechnology in Japan. Rev Sci Tech 24(1):109–115

    CAS  PubMed  Google Scholar 

  • Yu C, Cao Y, Zou H, Xian M (2011) Metabolic engineering of Escherichia coli for biotechnological production of high-value organic acids and alcohols. Appl Microbiol Biotechnol 89(3):573–583

    Article  CAS  PubMed  Google Scholar 

  • Zhang F, Rodriguez S, Keasling JD (2011) Metabolic engineering of microbial pathways for advanced biofuels production. Curr Opin Biotechnol 22(6):775–783

    Article  CAS  PubMed  Google Scholar 

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Correspondence to David J. Glass .

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List of Acronyms

List of Acronyms

EPA:

U.S. Environmental Protection Agency

FDA:

U.S. Food and Drug Administration

GMM:

Genetically Modified Microorganism

GMO:

Genetically Modified Organism

LMO:

Living Modified Organism

MCAN:

Microbial Commercial Activity Notice

PMN:

Premanufacture Notice

TERA:

TSCA Experimental Release Application

TSCA:

Toxic Substances Control Act

USDA:

U.S. Department of Agriculture

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Glass, D.J. (2015). Government Regulation of the Uses of Genetically Modified Algae and Other Microorganisms in Biofuel and Bio-based Chemical Production. In: Prokop, A., Bajpai, R., Zappi, M. (eds) Algal Biorefineries. Springer, Cham. https://doi.org/10.1007/978-3-319-20200-6_2

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