Abstract
Because the grasses are common plants, often ecologically dominant and with nutritious seeds, it is not surprising that they were harvested and later domesticated by the earliest agriculturalists. Archaeological evidence shows that wild grasses were used well before agriculture began (Bettinger et al. 2010; Kislev et al. 1992; Purugganan and Fuller 2009), and only gradually did early hunter-gatherer groups shift to farming. Fuller (2007) suggests a model, modified from Harris (1989), that describes gathering of wild food and cultivation of domesticated plants as end-points of a continuum, with intermediate stages of “semi-domestication” that spread over various lengths of time in various crops (e.g., Tanno and Willcox 2006). In general, this model shows that domestication was a long slow process, occurring over hundreds to thousands of years. As population genetic data have been applied more extensively to the question of domestication, and as more archaeological sites have been investigated, it has also become clear that many domesticated species were domesticated more than once (Weiss et al. 2006). The best studied of the cereals are the so-called Big Three – wheat, rice, and maize – plus barley, all of which have an appreciable archaeological record. However, additional data are accumulating on many other species that are somewhat less important for modern agriculture, but that have been important historically and regionally; these data permit some generalizations about the domestication process as well as the effects of selection on genes and genomes.
“… agriculture [is] something the grasses did to people as a way to conquer the trees.” (Pollan 2001), p. xxi
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References
Akhunov, E.D., Akhunova, A.R., Anderson, O.D., Anderson, J.A., Blake, N., Clegg, M.T., Coleman-Derr, D., Conley, E.J., Crossman, C.C., Deal, K.R., Dubcovsky, J., Gill, B.S., Gu, Y.Q., Hadam, J., Heo, H., McGuire, E., Morrell, P.L., Qualset, C.O., Renfro, J., Tabanao, D., Talbert, L.E., Tian, C., Toleno, D.M., Warburton, M., You, F.M., Zhang, W., Dvorak, J. 2010. Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes. BMC Genomics 11: 702.
Artschwager, E., Brandes, E.W. 1958. Sugarcane (Saccharum officinarum L.): origin, classification, characteristics and descriptions of representative clones. Washington, DC: U.S. Department of Agriculture.
Azhaguvel, P., Komatsuda, T. 2007. A phylogenetic analysis based on nucleotide sequence of a marker linked to the brittle rachis locus indicates a diphyletic origin of barley. Ann. Bot. 100: 1009–1015.
Bettinger, R.L., Barton, L., Morgan, C. 2010. The origins of food production in North China: a different kind of agricultural revolution. Evol. Anthropol. 19: 9–21.
Burger, J.C., Ellstrand, N.C. 2005. Feral rye - evolutionary origins of a weed. In: Gressel, J. (ed.) Crop ferality and volunteerism. Boca Raton, Florida: CRC Press. pp. 175–192
Clark, R.M., Wagler, T.N., Quijada, P., Doebley, J. 2006. A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture. Nat. Genet. 38: 594–597.
Clotault, J., Thuillet, A.-C., Buiron, M., DeMita, S., Couderc, M., Haussmann, B.I.G., Mariac, C., Vigouroux, Y. 2012. Evolutionary history of pearl millet (Pennisetum glaucum [L.] R. Br.) and selection on flowering genes since its domestication. Mol. Biol. Evol. 29: 1199–1212.
D’Andrea, A.C. 2008. T’ef (Eragrostis tef) in ancient agricultural systems of highland Ethiopia. Econ. Bot. 62: 547–566.
Devos, K.M., Costa de Oliveira, A., Xu, X., Estill, J., Estep, M., Jogi, A., Morales, M., Pinheiro, J., SanMiguel, P., Bennetzen, J.L. 2008. Structure and organization of the wheat genome - the number of genes in the hexaploid wheat genome. In: Appels, R., Eastwood, R., Lagudah, E., Langridge, P., Mackay, M., McIntyre, L., Sharp, P. (eds.) Proceedings of the 11th International Wheat Genetics Symposium. Sydney, Australia: Sydney University Press. pp. 1–5
Dida, M.M., Wanyera, N., Harrison Dunn, M.L., Bennetzen, J.L., Devos, K.M. 2008. Population structure and diversity in finger millet (Eleusine coracana) germplasm. Trop. Plant Biol. 1: 131–141.
Dillon, S.L., Shapter, F.M., Henry, R.J., Cordeiro, G., Izauierdo, L., Lee, L.S. 2007. Domestication to crop improvement: genetic resources for Sorghum and Saccharum (Andropogoneae). Ann. Bot. 100: 975–989.
Doebley, J., Stec, A., Hubbard, L. 1997. The evolution of apical dominance in maize. Nature 386: 485–488.
Doebley, J.F., Gaut, B.S., Smith, B.D. 2006. The molecular genetics of crop domestication. Cell 127: 1309–1321.
Doust, A. 2007. Architectural evolution and its implications for domestication in grasses. Ann. Bot. 100: 941–950.
Doust, A.N., Devos, K.M., Gadberry, M., Gale, M.D., Kellogg, E.A. 2004. Genetic control of branching in foxtail millet. Proc. Natl. Acad. Sci. USA 101: 9045–9050.
Duvick, D.N. 2001. Biotechnology in the 1930s: the development of hybrid maize. Nature Rev. Genet. 2: 69–64.
Fuller, D.Q. 2007. Contrasting patterns in crop domestication and domestication rates: recent archaeobotanical insights from the Old World. Ann. Bot. 100: 903–924.
Gale, M.D., Devos, K.M. 1998. Plant comparative genetics after 10 years. Science 282: 656–659.
Ge, W., Liu, L., Chen, X., Jin, Z. 2011. Can noodles be made from millet? An experimental investigation of noodle manufacture together with starch grain analyses. Archaeometry 53: 194–204.
Glémin, S., Bataillon, T. 2009. A comparative view of the evolution of grasses under domestication. New Phytol. 183: 273–290.
Harlan, J.R. 1992. Crops and man. Madison, Wisconsin: American Society of Agronomy and Crop Science Society of America.
Harlan, J.R., de Wet, J.M.J., Price, E.G. 1973. Comparative evolution of cereals. Evolution 27: 311–325.
Harris, D.R. 1989. An evolutionary continuum of people-plant interaction. In: Harris, D.R., Hillman, G.C. (eds.) Foraging and farming: the evolution of plant exploitation. London: Routledge. pp. 11–26
Haudry, A., Cenci, A., Ravel, C., Bataillon, T., Brunel, D., Poncet, C., Hochu, I., Poirier, S., Santoni, S., Glémin, S., David, J. 2007. Grinding up wheat: a massive loss of nucleotide diversity since domestication. Mol. Biol. Evol. 24: 1506–1517.
Hillman, G.C., Davies, M.S. 1990. Domestication rates in wild-type wheats and barley under primitive cultivation. Biol. J. Linn. Soc. 39: 39–78.
Hilu, K.W., de Wet, J.M.J. 1976. Racial evolution in Eleusine coracana ssp. coracana (Finger Millet). Amer. J. Bot. 63: 1311–1318.
Hilu, K.W., de Wet, J.M.J., Harlan, J.R. 1979. Archaeobotanical studies of Eleusine coracana ssp. coracana. Amer. J. Bot. 66: 330–333.
Huang, X., Kurata, N., Wei, X., Wang, Z.-X., Wang, A., Zhao, Q., Zhao, Y., Liu, K., Lu, H., Li, W., Guo, Y., Lu, Y., Zhou, C., Fan, D., Weng, Q., Zhu, C., Huang, T., Zhang, L., Wang, Y., Feng, L., Furuumi, H., Kubo, T., Miyabayashi, T., Yuan, X., Xu, Q., Dong, G., Zhan, Q., Li, C., Fujiyama, A., Toyoda, A., Lu, T., Feng, Q., Qian, Q., Li, J., Han, B. 2012. A map of rice genome variation reveals the origin of cultivated rice. Nature 490: 497–501.
Hufford, M.B., Xu, X., van Heerwaarden, J., Pyhäjärvi, T., Chia, J.-M., Cartwright, R.A., Elshire, R.J., Glaubitz, J.C., Guill, K.E., Kaeppler, S.M., Lai, J., Morrell, P.L., Shannon, L.M., Song, C., Springer, N.M., Swanson-Wagner, R.A., Tiffin, P., Wang, J., Zhang, G., Doebley, J., McMullen, M.D., Ware, D., Buckler, E.S., Yang, S., Ross-Ibarra, J. 2012. Comparative population genomics of maize domestication and improvement. Nat. Genet. 44: 808–811.
Hunt, H.V., van der Linden, M., Liu, X., Motuzaite-Matuzeviciute, G., Colledge, S., Jones, M.K. 2008. Millets across Eurasia: chronology and context of early records of the genera Panicum and Setaria from archaeological sites in the Old World. Veget. Hist. Archaeobot. 17 (suppl.): S5-S18.
Ingram, A.L., Doyle, J.J. 2003. The origin and evolution of Eragrostis tef (Poaceae) and related polyploids: evidence from nuclear waxy and plastid rps16. Amer. J. Bot. 90: 116–122.
Kaltsikes, P.J., Evans, L.E., Bushuk, W. 1968. Durum-type wheat with high bread-making quality. Science 159: 211–213.
Kellogg, E.A. 2009. The evolutionary history of Ehrhartoideae, Oryzeae, and Oryza. RICE 2: 1–14.
Kerber, E.R., Tipples, K.H. 1969. Effects of the D genome on milling and baking properties of wheat. Can. J. Plant Sci. 49: 255–263.
Khush, G.S. 1963. Cytogenetic and evolutionary studies in Secale III. Cytogenetics of weedy ryes and origin of cultivated rye. Econ. Bot. 17: 60–71.
Kihara, H. 1944. Discovery of the DD-analyser, one of the ancestors of Triticum vulgare. Agric. Hortic. 19: 13–14.
Kihara, H. 1982. Wheat studies - retrospect and prospects. Amsterdam: Elsevier.
Kihara, H., Lilienfeld, F. 1949. A new synthesized 6x-wheat. Hereditas 35 (S1): 307–319.
Kislev, M.E., Nadel, D., Carmi, I. 1992. Epipalaeolithic (19,000 BP) cereal and fruit diet at Ohalo II, Sea of Galilee, Israel. Rev. Palaeobot. Palynol. 73: 161–166.
Klee, M., Zach, B., Neumann, K. 2000. Four thousand years of plant exploitation in the Chad Basin of northeast Nigeria I: the archaeobotany of Kursakata. Veget. Hist. Archaeobot. 9: 223–237.
Komatsuda, T., Pourkheirandish, M., He, C., Azhaguvel, P., Kanamori, H., Perovic, D., Stein, N., Graner, A., Wicker, T., Tagiri, A., Lundqvist, U., Fujimura, T., Matsuoka, M., Matsumoto, T., Yano, M. 2007. Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. Proc. Natl. Acad. Sci. USA 104: 1424–1429.
Konishi, S., Izawa, T., Lin, S.Y., Ebana, K., Fukuta, Y., Sasaki, T., Yano, M. 2006. An SNP caused loss of seed shattering during rice domestication. Science 312: 1392–1396.
Lebot, V. 1999. Biomolecular evidence for plant domestication in Sahul. Genet. Res. Crop Evol. 46: 619–628.
Le Thierry d’Ennequin, M., Panaud, O., Toupance, B., Sarr, A. 2000. Assessment of genetic relationships between Setaria italica and its wild relative S. viridis using AFLP markers. Theor. Appl. Genet. 100: 1061–1066.
Li, W., Gill, B.S. 2006. Multiple genetic pathways for seed shattering in the grasses. Func. Integ. Genomics 6: 300–309.
Li, Y., Wu, S. 1996. Traditional maintenance and multiplication of foxtail millet (Setaria italica (L.) P. Beauv.) landraces in China. Euphytica 87: 33–38.
Li, C., Zhou, A., Sang, T. 2006. Rice domestication by reducing shattering. Science 311: 1936–1939.
Lu, H., Zhang, J., Liu, K.-b., Wu, N., Li, Y., Zhou, K., Ye, M., Zhang, T., Zhang, H., Yang, X., Shen, L., Xu, D., Li, Q. 2009a. Earliest domestication of common millet (Panicum miliaceum) in East Asia extended to 10,000 years ago. Proc. Natl. Acad. Sci. USA 106: 7367–7372.
Lu, H., Zhang, J., Wu, N., Liu, K.-b., Xu, D., Li, Q. 2009b. Phytoliths analysis for the discrimination of foxtail millet (Setaria italica) and common millet (Panicum miliaceum). PLoS ONE 4: e4448.
Luo, M.-C., Yang, Z.-L., You, F.M., Kawahara, T. 2007. The structure of wild and domesticated emmer wheat populations, gene flow between them, and the site of emmer domestication. Theor. Appl. Genet. 114: 947–959.
Manning, K., Pelling, R., Higham, T., Schwenniger, J.-L., Fuller, D.Q. 2011. 4500-year old domesticated pearl millet (Pennisetum glaucum) from the Tilemsi Valley, Mali: new insights into an alternative cereal domestication pathway. J. Archaeol. Sci. 38: 312–322.
Mariac, C., Robert, T., Allinne, C., Remigereau, M.S., Luxereau, A., Tidjani, M., Seyni, O., Bezancon, G., Pham, J.L., Sarr, A. 2006. Genetic diversity and gene flow among pearl millet crop/weed complex: a case study. Theor. Appl. Genet. 113: 1003–1014.
Matsuoka, Y. 2011. Evolution of polyploid Triticum wheats under cultivation: the role of domestication, natural hybridization and allopolyploid speciation in their diversification. Plant Cell Physiol. 52: 750–764.
Matsuoka, Y., Vigouroux, Y., Goodman, M.M., Sanchez G., J., Buckler, E., Doebley, J. 2002. A single domestication for maize shown by multilocus microsatellite genotyping. Proc. Natl. Acad. Sci. USA 99: 6080–6084.
McFadden, E.S., Sears, E.R. 1946. The origin of Triticum spelta and its free-threshing hexaploid relatives. J. Hered. 37: 81–89.
Molina, J., Sikora, M., Garud, N., Flowers, J.M., Rubinstein, S., Reynolds, A., Huang, P., Jackson, S., Schaal, B.A., Bustamente, C.D., Boyko, A.R., Purugganan, M.D. 2011. Molecular evidence for a single evolutionary origin of domesticated rice. Proc. Natl. Acad. Sci. USA 108: 8351–8356.
Morrell, P.L., Clegg, M.T. 2007. Genetic evidence for a second domestication of barley (Hordeum vulgare) east of the Fertile Crescent. Proc. Natl. Acad. Sci. USA 104: 3289–3294.
Nalam, V.J., Vales, M.I., Watson, C.J.W., Kianian, S.F., Riera-Lizarazu, O. 2006. Map-based analysis of genes affecting the brittle rachis character in tetraploid wheat (Triticum turgidum L.). Theor. Appl. Genet. 112: 373–381.
Nalam, V.J., Vales, M.I., Watson, C.J.W., Johnson, E.B., Riera-Lizarazu, O. 2007. Map-based analysis of genetic loci on chromosome 2D that affect glume tenacity and threshability, components of the free-threshing habit in common wheat (Triticum aestivum L.). Theor. Appl. Genet. 116: 135–145.
National Research Council. 1996. Lost crops of Africa. Volume 1. Grains. Washington, DC: National Academy Press.
Nelson, J.C., Andreescu, C., Breseghello, F., Finney, P.L., Gualberto, D.G., Bergmann, C.J., Peña, R.J., Perretant, M.R., Leroy, P., Qualset, C.O., Sorrells, M.E. 2006. Quantitative trait locus analysis of wheat quality traits. Euphytica 149: 145–159.
Neves, S.S., Swire-Clark, G., Hilu, K.W., Baird, W.V. 2005. Phylogeny of Eleusine (Poaceae: Chloridoideae) based on nuclear ITS and plastid trnT-trnF sequences. Mol. Phyl. Evol. 35: 395–419.
Olsen, K.M., Caicedo, A.L., Polato, N., McClung, A., McCouch, S., Purugganan, M.D. 2006. Selection under domestication: evidence for a sweep in the rice Waxy genomic region. Genetics 173: 975–983.
Oumar, I., Mariac, C., Pham, J.-L., Vigoroux, Y. 2008. Phylogeny and origin of pearl millet (Pennisetum glaucum [L.] R. Br.) as revealed by microsatellite loci. Theor. Appl. Genet. 117: 489–497.
Palaisa, K., Morgante, M., Tingey, S., Rafalski, A. 2006. Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep. Proc. Natl. Acad. Sci. USA 101: 9885–9890.
Peng, Y.-Y., Wei, Y.-M., Baum, B.R., Jiang, Q.-T., Lan, X.-J., Dai, S.-F., Zheng, Y.-L. 2010. Phylogenetic investigation of Avena diploid species and the maternal genome donor of Avena polyploids. Taxon 59: 1472–1482.
Peng, J.H., Sun, D., Nevo, E. 2011. Domestication evolution, genetics and genomics in wheat. Mol. Breeding 28: 281–301.
Piperidis, G., Piperidis, N., D’Hont, A. 2009. Molecular cytogenetic investigation of chromosome composition and transmission in sugarcane. Mol. Genet. Genomics 284: 65–73.
Piperno, D.R., Ranere, A.J., Holst, I., Iriarte, J., Dickau, R. 2009. Starch grain and phytolith evidence for early ninth millenium B.P. maize from the Central Balsas River Valley, Mexico. Proc. Natl. Acad. Sci. USA 106: 5019–5024.
Planchuelo, A.M., Peterson, P.M. 2000. The species of Bromus (Poaceae: Bromeae) in South America. In: Jacobs, S.W.L., Everett, J. (eds.) Grasses: Systematics and evolution. Melbourne: CSIRO. pp. 89–101
Pollan, M. 2001. The botany of desire. New York: Random House.
Preston, J.C., Wang, H., Doebley, J., Kellogg, E.A. 2012. The role of teosinte glume architecture (tga1) in coordinated regulation and evolution of grass glumes and inflorescence axes. New Phytol. 193: 204–215.
Purugganan, M.D., Fuller, D.Q. 2009. The nature of selection during plant domestication. Nature 457: 843–848.
Ramsay, L., Comadran, J., Druka, A., Marshall, D.F., Thomas, W.T.B., Macaulay, M., MacKenzie, K., Simpson, C., Fuller, J., Bonar, N., Hayes, P.M., Lundqvist, U., Franckowiak, J.D., Close, T.J., Muehlbauer, G.J., Waugh, R. 2011. INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1. Nat. Genet. 43: 169–172.
Remigereau, M.-S., Lakis, G., Rekima, S., Leveugle, M., Fontaine, M.C., Langin, T., Sarr, A., Robert, T. 2011. Cereal domestication and evolution of branching: evidence for soft selection in the Tb1 orthologue of pearl millet (Pennisetum glaucum [L.] R. Br.). PLoS ONE 6: e22404.
Saisho, D., Purugganan, M.D. 2007. Molecular phylogeography of domesticated barley traces expansion of agriculture in the Old World. Genetics 177: 1765–1776.
Sencer, H.A., Hawkes, J.G. 1980. On the origin of cultivated rye. Biol. J. Linn. Soc. 13: 299–313.
Simons, K.J., Fellers, J.P., Trick, H.N., Zhang, Z., Tai, Y.-S., Gill, B.S., Faris, J.D. 2006. Molecular characterization of the major wheat domestication gene Q. Genetics 172: 547–555.
Swanson-Wagner, R., Briskine, R., Schaefer, R., Hufford, M.B., Ross-Ibarra, J., Myers, C.L., Tiffin, P., Springer, N.M. 2012. Reshaping of the maize transcriptome by domestication. Proc. Natl. Acad. Sci. USA 109: 11878–11883.
Sweeney, M., McCouch, S. 2007. The complex history of the domestication of rice. Ann. Bot. 100: 951–957.
Sweeney, M.T., Thomson, M.J., Pfeil, B.E., McCouch, S. 2006. Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice. Plant Cell 18: 283–294.
Tanno, K., Willcox, G. 2006. How fast was wild wheat domesticated? Science 311: 1886.
Triplett, J.K., Wang, Y., Zhong, J., Kellogg, E.A. 2012. Five nuclear loci resolve the polyploid history of switchgrass (Panicum virgatum L.) and relatives. PLoS ONE 7: e38702.
van Heerwaarden, J., Doebley, J., Briggs, W.H., Glaubitz, J.C., Goodman, M.M., Sanchez Gonzalez, J.D.J., Ross-Ibarra, J. 2011. Genetic signals of origin, spread, and introgression in a large sample of maize landraces. Proc. Natl. Acad. Sci. USA 108: 1088–1092.
van Heerwaarden, J., Hufford, M.B., Ross-Ibarra, J. 2012. Historical genomics of North American maize. Proc. Natl. Acad. Sci. USA 109: 12420–12425.
Vaughan, D.A., Lu, B.-R., Tomooka, N. 2008. The evolving story of rice evolution. Plant Sci. 174: 394–408.
Wang, Z.M., Devos, K.M., Liu, C.J., Wang, R.Q., Gale, M.D. 1998. Construction of RFLP-based maps of foxtail millet, Setaria italica (L.) P. Beauv. Theor. Appl. Genet. 96: 31–36.
Wang, H., Nussbaum-Wagler, T., Li, B., Zhao, Q., Vigouroux, Y., Faller, M., Bomblies, K., Lukens, L., Doebley, J.F. 2005. The origin of the naked grains of maize. Nature 436: 714–719.
Wang, E., Wang, J., Zhu, X., Hao, W., Wang, L., Li, Q., Zhang, L., He, W., Lu, B., Lin, H., Ma, H., Zhang, G., He, Z. 2008. Control of rice grain-filling and yield by a gene with a potential signature of domestication. Nat. Genet. 40: 1370–1374.
Wang, C., Chen, J., Zhi, H., Yang, L., Li, W., Wang, Y., Li, H., Zhao, B., Chen, M., Diao, X. 2010. Population genetics of foxtail millet and its wild ancestor. BMC Genet. 11: 90.
Wang, J., Luo, M.-C., Chen, Z., You, F.M., Wei, Y., Zheng, Y., Dvorak, J. 2013. Aegilops tauschii single nucleotide polymorphisms shed light on the origins of wheat D-genome genetic diversity and pinpoint the geographic origin of hexaploid wheat. New Phytol. 198: 925–937.
Weiss, E., Kislev, M.E., Hartmann, A. 2006. Autonomous cultivation before domestication. Science 312: 1608–1610.
Willcox, G. 2005. The distribution, natural habitats and availability of wild cereals in relation to their domestication in the Near East: multiple events, multiple centres. Veget. Hist. Archaeobot. 14: 534–541.
Wright, S.I., Bi, I.V., Schroeder, S.G., Yamasaki, M., Doebley, J.F., McMullen, M.D., Gaut, B.S. 2005. The effects of artificial selection on the maize genome. Science 308: 1310–1314.
Zhou, L., Zhang, J., Yan, J., Song, R. 2011. Two transposable element insertions are causative mutations for the major domestication gene teosinte branched1 in modern maize. Cell Res 21: 1267–1270.
Zhou, Y., Lu, D., Li, C., Luo, J., Zhu, B.-F., Zhu, J., Shangguan, Y., Wang, Z., Sang, T., Zhou, B., Han, B. 2012. Genetic control of seed shattering in rice by the APETALA2 transcription factor SHATTERING ABORTION1. Plant Cell 24: 1034–1048.
Zohary, D., Hopf, M. 2000. Domestication of plants in the Old World. Oxford: Oxford University Press.
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Kellogg, E.A. (2015). Domestication. In: Flowering Plants. Monocots. The Families and Genera of Vascular Plants, vol 13. Springer, Cham. https://doi.org/10.1007/978-3-319-15332-2_12
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