Experiments and Results

Part of the SpringerBriefs in Computer Science book series (BRIEFSCOMPUTER)


This chapter describes the experimental results of the MRF-based method for homology detection and fold recognition including alignment accuracy, success rate, running time and contribution of some important features. This chapter also compares the MRF-based method with currently popular PSSM- and HMM-based methods such as HHpred, HHblits and FFAS, in terms of alignment accuracy and success rate of homology detection and fold recognition.


Alignment accuracy Homology detection success rate Fold recognition rate HHpred HHblits FFAS 


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Copyright information

© The Author(s) 2015

Authors and Affiliations

  1. 1.Toyota Technological InstituteChicagoUSA

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