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Solid-Binding Peptides: Immobilisation Strategies for Extremophile Biocatalysis in Biotechnology

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Part of the book series: Grand Challenges in Biology and Biotechnology ((GCBB,volume 1))

Abstract

Solid-binding peptides (SBP’s) have the ability to bind with high affinity and selectivity to the surfaces of a diverse range of solid materials. They offer a simple and versatile method for the directed immobilisation and orientation of proteins and enzymes onto solid supports without impeding their catalytic functionality. This chapter describes SBPs and their potential applications in the isolation, purification and reuse of thermostable enzymes using readily-available and inexpensive silica-based matrices. We suggest some prospects for the introduction of thermostable enzymes immobilised onto solid matrices using SBPs into several of areas of applied biotechnology. In particular, we outline conceptual applications for immobilised enzymes in cell-free synthetic biology, biofuels production and in gas phase biocatalysis for the capture of carbon dioxide.

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References

  • Abdelhamid MA, Motomura K, Ikeda T et al (2014) Affinity purification of recombinant proteins using a novel silica-binding peptide as a fusion tag. Appl Microbiol Biotechnol 98(12):5677–5684

    Article  CAS  PubMed  Google Scholar 

  • Azari F, Nemat-Gorgani M (1999) Reversible denaturation of carbonic anhydrase provides a method for its adsorptive immobilization. Biotechnol Bioeng 62(2):193–199

    Article  CAS  PubMed  Google Scholar 

  • Bachas-Daunert P, Sellers Z, Wei Y (2009) Detection of halogenated organic compounds using immobilized thermophilic dehalogenase. Anal Bioanal Chem 395(4):1173–1178

    Article  CAS  PubMed  Google Scholar 

  • Ball P (2001) Life’s lessons in design. Nature 409(6818):413–416

    Article  CAS  PubMed  Google Scholar 

  • Bandlish RK, Michael Hess J, Epting KL et al (2002) Glucose-to-fructose conversion at high temperatures with xylose (glucose) isomerases from Streptomyces murinus and two hyperthermophilic Thermotoga species. Biotechnol Bioeng 80(2):185–194

    Article  CAS  PubMed  Google Scholar 

  • Baneyx F, Schwartz DT (2007) Selection and analysis of solid-binding peptides. Curr Opin Biotechnol 18(4):312–317

    Article  CAS  PubMed  Google Scholar 

  • Basen M, Rhaesa AM, Kataeva I et al (2014) Degradation of high loads of crystalline cellulose and of unpretreated plant biomass by the thermophilic bacterium Caldicellulosiruptor bescii. Bioresour Technol 152:384–392

    Article  CAS  PubMed  Google Scholar 

  • Bell PJL, Sunna A, Gibbs MD et al (2002) Prospecting for novel lipase genes using PCR. Microbiology 148(8):2283–2291

    Article  CAS  PubMed  Google Scholar 

  • Belzil A, Parent C (2005) Methods of chemical immobilization of an enzyme on a solid support. Biochem Cell Biol 83(1):70–77

    Article  CAS  PubMed  Google Scholar 

  • Betancor L, Luckarift HR (2008) Bioinspired enzyme encapsulation for biocatalysis. Trends Biotechnol 26(10):566–572

    Article  CAS  PubMed  Google Scholar 

  • Blanco RM, Terreros P, Fernández-Pérez M et al (2004) Functionalization of mesoporous silica for lipase immobilization: characterization of the support and the catalysts. J Mol Catal B: Enzym 30(2):83–93

    Article  CAS  Google Scholar 

  • Blumer-Schuette SE, Brown SD, Sander KB et al (2014) Thermophilic lignocellulose deconstruction. FEMS Microbiol Rev 38(3):393–448

    Article  CAS  PubMed  Google Scholar 

  • Bolivar JM, Rocha-Martin J, Mateo C et al (2009) Coating of soluble and immobilized enzymes with ionic polymers: full stabilization of the quaternary structure of multimeric enzymes. Biomacromolecules 10(4):742–747

    Article  CAS  PubMed  Google Scholar 

  • Boone CD, Gill S, Habibzadegan A et al (2013) Carbonic anhydrase: an efficient enzyme with possible global implications. Int J Chem Eng 2013:6

    Article  CAS  Google Scholar 

  • Brady D, Jordaan J (2009) Advances in enzyme immobilisation. Biotechnol Lett 31(11):1639–1650

    Article  CAS  PubMed  Google Scholar 

  • Branston S, Stanley E, Ward J et al (2013) Determination of the survival of bacteriophage M13 from chemical and physical challenges to assist in its sustainable bioprocessing. Biotechnol Bioprocess Eng 18(3):560–566

    Article  CAS  Google Scholar 

  • Breck DW (1973) Zeolite molecular sieves: structure, chemistry, and use. Wiley, New York

    Google Scholar 

  • Brown S (1992) Engineered iron oxide-adhesion mutants of the Escherichia coli phage lambda receptor. Proc Natl Acad Sci U S A 89(18):8651–8655

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Brown S (1997) Metal-recognition by repeating polypeptides. Nat Biotechnol 15(3):269–272

    Article  CAS  PubMed  Google Scholar 

  • Brown S, Sarikaya M, Johnson E (2000) A genetic analysis of crystal growth. J Mol Biol 299(3):725–735

    Article  CAS  PubMed  Google Scholar 

  • Camarero JA (2008) Recent developments in the site-specific immobilization of proteins onto solid supports. Pept Sci 90(3):450–458

    Article  CAS  Google Scholar 

  • Cao L (2006) Carrier-bound immobilized enzymes: principles, application and design. Wiley-VCH, Weinheim

    Google Scholar 

  • Capasso C, De Luca V, Carginale V et al (2012) Biochemical properties of a novel and highly thermostable bacterial alpha-carbonic anhydrase from Sulfurihydrogenibium yellowstonense YO3AOP1. J Enzyme Inhib Med Chem 27(6):892–897

    Article  CAS  PubMed  Google Scholar 

  • Care A, Chi F, Bergquist P et al (2014a) Biofunctionalization of silica-coated magnetic particles mediated by a peptide. J Nanopart Res 16(8):1–9

    Article  CAS  Google Scholar 

  • Care A, Nevalainen H, Bergquist P et al (2014b) Effect of Trichoderma reesei proteinases on the affinity of an inorganic-binding peptide. Appl Biochem Biotechnol 173(8):2225–2240

    Google Scholar 

  • Care A, Bergquist PL, Sunna A (2015) Solid-binding peptides: smart tools for nanobiotechnology. Trends Biotechnol 33(5):259–268

    Google Scholar 

  • Çaykara T, Güven O (1998) Effect of preparation methods on thermal properties of poly(acrylic acid)/silica composites. J Appl Polym Sci 70(5):891–895

    Google Scholar 

  • Cetinel S, Caliskan HB, Yucesoy DT et al (2013) Addressable self-immobilization of lactate dehydrogenase across multiple length scales. Biotechnol J 8(2):262–272

    Article  CAS  PubMed  Google Scholar 

  • Charbit A, Boulain JC, Ryter A et al (1986) Probing the topology of a bacterial membrane protein by genetic insertion of a foreign epitope; expression at the cell surface. EMBO J 5(11):3029–3037

    CAS  PubMed  PubMed Central  Google Scholar 

  • Chen AY, Deng Z, Billings AN et al (2014) Synthesis and patterning of tunable multiscale materials with engineered cells. Nat Mater 13(5):515–523

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cherry JR, Fidantsef AL (2003) Directed evolution of industrial enzymes: an update. Curr Opin Biotechnol 14(4):438–443

    Article  CAS  PubMed  Google Scholar 

  • Chhabra SR, Shockley KR, Ward DE et al (2002) Regulation of endo-acting glycosyl hydrolases in the hyperthermophilic bacterium Thermotoga maritima grown on glucan- and mannan-based polysaccharides. Appl Environ Microbiol 68(2):545–554

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Chiu CY, Li Y, Huang Y (2010) Size-controlled synthesis of Pd nanocrystals using a specific multifunctional peptide. Nanoscale 2(6):927–930

    Article  CAS  PubMed  Google Scholar 

  • Cho EJ, Jung S, Kim HJ et al (2012) Co-immobilization of three cellulases on Au-doped magnetic silica nanoparticles for the degradation of cellulose. Chem Commun 48(6):886–888

    Article  CAS  Google Scholar 

  • Coil DA, Badger JH, Forberger HC et al (2014) Complete genome sequence of the extreme thermophile Dictyoglomus thermophilum H-6–12. Genome Announc 2(1):e00109–e00114

    Article  PubMed  PubMed Central  Google Scholar 

  • Collino S, Evans JS (2008) Molecular specifications of a mineral modulation sequence derived from the aragonite-promoting protein n16. Biomacromolecules 9(7):1909–1918

    Article  CAS  PubMed  Google Scholar 

  • Cowan DA, Fernandez-Lafuente R (2011) Enhancing the functional properties of thermophilic enzymes by chemical modification and immobilization. Enzyme Microb Technol 49(4):326–346

    Article  CAS  PubMed  Google Scholar 

  • Cowan DA, Daniel RM, Morgan HW (1987) Some observations on the inhibition and activation of a thermophilic protease. Int J Biochem 19(5):483–486

    Article  CAS  PubMed  Google Scholar 

  • Coyle BL, Baneyx F (2014) A cleavable silica-binding affinity tag for rapid and inexpensive protein purification. Biotechnol Bioeng 111(10):2019–2026

    Article  CAS  PubMed  Google Scholar 

  • Cripps RE, Eley K, Leak DJ et al (2009) Metabolic engineering of Geobacillus thermoglucosidasius for high yield ethanol production. Metab Eng 11(6):398–408

    Article  CAS  PubMed  Google Scholar 

  • Cui Y, Kim SN, Jones SE et al (2010) Chemical functionalization of graphene enabled by phage displayed peptides. Nano Lett 10(11):4559–4565

    Article  CAS  PubMed  Google Scholar 

  • Dang X, Yi H, Ham M-H et al (2011) Virus-templated self-assembled single-walled carbon nanotubes for highly efficient electron collection in photovoltaic devices. Nat Nanotechnol 6(6):377–384

    Article  CAS  PubMed  Google Scholar 

  • Dellomonaco C, Fava F, Gonzalez R (2010) The path to next generation biofuels: successes and challenges in the era of synthetic biology. Microb Cell Fact 9(1):3

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Dong Q, Yan X, Zheng M et al (2014) Immobilization of a thermostable inorganic pyrophosphatase from the archaeon Pyrococcus furiosus onto amino-functionalized silica beads. J Appl Polym Sci 131(17):8669–8675

    Google Scholar 

  • Dunn RV, Daniel RM (2004) The use of gas–phase substrates to study enzyme catalysis at low hydration. Phil Trans R Soc Lond 359(1448):1309–1320

    Article  CAS  Google Scholar 

  • Estephan E, Saab MB, Martin M et al (2011) Phages recognizing the indium nitride semiconductor surface via their peptides. J Pept Sci 17(2):143147

    Article  CAS  Google Scholar 

  • Evans JS, Samudrala R, Walsh TR et al (2008) Molecular design of inorganic binding polypeptides. MRS Bull 33:514–518

    Article  CAS  Google Scholar 

  • Fernandez-Lafuente R (2009) Stabilization of multimeric enzymes: strategies to prevent subunit dissociation. Enzyme Microb Technol 45(6–7):405–418

    Article  CAS  Google Scholar 

  • Filho M, Pessela BC, Mateo C et al (2008) Immobilization–stabilization of an α-galactosidase from Thermus sp. strain T2 by covalent immobilization on highly activated supports: selection of the optimal immobilization strategy. Enzyme Microb Technol 42(3):265–271

    Article  CAS  Google Scholar 

  • Fischer L, Bromann R, Kengen SW et al (1996) Catalytical potency of beta-glucosidase from the extremophile Pyrococcus furiosus in glucoconjugate synthesis. Biotechnology (NY) 14(1):88–91

    Article  CAS  Google Scholar 

  • Fisher Z, Boone CD, Biswas SM et al (2012) Kinetic and structural characterization of thermostabilized mutants of human carbonic anhydrase II. Protein Eng Des Sel 25(7):347–355

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Forbes LM, Goodwin AP, Cha JN (2010) Tunable size and shape control of platinum nanocrystals from a single peptide sequence. Chem Mater 22(24):6524–6528

    Article  CAS  Google Scholar 

  • Furlong D (1982) Adsorption of Tris(2,2′-bipyridine)ruthenium(II) cations at silica/aqueous solution interfaces. Aust J Chem 35(5):911–917

    Article  CAS  Google Scholar 

  • Gabryelczyk B, Szilvay GR, Salomaki M et al (2013) Selection and characterization of peptides binding to diamond-like carbon. Colloids Surf B Biointerfaces 110:66–73

    Article  CAS  PubMed  Google Scholar 

  • Gabryelczyk B, Szilvay GR, Linder MB (2014) The structural basis for function in diamond-like carbon binding peptides. Langmuir 30(29):8798–8802

    Article  CAS  PubMed  Google Scholar 

  • Gaffney D, Cooney J, Magner E (2012) Modification of mesoporous silicates for immobilization of enzymes. Top Catal 55(16–18):1101–1106

    Article  CAS  Google Scholar 

  • Garcia-Galan C, Berenguer-Murcia Á, Fernandez-Lafuente R et al (2011) Potential of different enzyme immobilization strategies to improve enzyme performance. Adv Synth Catal 353(16):2885–2904

    Article  CAS  Google Scholar 

  • Gaskin DJH, Starck K, Vulfson EN (2000) Identification of inorganic crystal-specific sequences using phage display combinatorial library of short peptides: a feasibility study. Biotechnol Lett 22(15):1211–1216

    Article  CAS  Google Scholar 

  • Ghose S, McNerney TM, Hubbard B (2004) Preparative protein purification on underivatized silica. Biotechnol Bioeng 87(3):413–423

    Article  CAS  PubMed  Google Scholar 

  • Gibbs MD, Reeves RA, Sunna A, Bergquist PL (1999) Sequencing and expression of a β-mannanase gene from the extreme thermophile Dictyoglomus thermophilum Rt46B.1, and characteristics of the recombinant enzyme. Curr Microbiol 39(6):351–357

    Article  CAS  PubMed  Google Scholar 

  • Goede K, Busch P, Grundmann M (2004) Binding specificity of a peptide on semiconductor surfaces. Nano Lett 4(11):2115–2120

    Article  CAS  Google Scholar 

  • Goward CR, Murphy JP, Atkinson T et al (1990) Expression and purification of a truncated recombinant streptococcal protein G. Biochem J 267(1):171–177

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Greiner L, Schroder I, Muller DH et al (2003) Utilization of adsorption effects for the continuous reduction of NADP+ with molecular hydrogen by Pyrococcus furiosus hydrogenase. Green Chem 5(6):697–700

    Article  CAS  Google Scholar 

  • Gülay S, Şanlı-Mohamed G (2012) Immobilization of thermoalkalophilic recombinant esterase enzyme by entrapment in silicate coated Ca-alginate beads and its hydrolytic properties. Int J Biol Macromol 50(3):545–551

    Article  PubMed  CAS  Google Scholar 

  • Gungormus M, Fong H, Kim IW et al (2008) Regulation of in vitro calcium phosphate mineralization by combinatorially selected hydroxyapatite-binding peptides. Biomacromolecules 9(3):966–973

    Article  CAS  PubMed  Google Scholar 

  • Hanefeld U, Gardossi L, Magner E (2009) Understanding enzyme immobilisation. Chem Soc Rev 38(2):453–468

    Article  CAS  PubMed  Google Scholar 

  • Hartmann M, Kostrov X (2013) Immobilization of enzymes on porous silicas: benefits and challenges. Chem Soc Rev 42(15):6277–6289

    Article  CAS  PubMed  Google Scholar 

  • Hasan MMF, First EL, Floudas CA (2013) Cost-effective CO2 capture based on in silico screening of zeolites and process optimization. Phys Chem Chem Phys 15(40):17601–17618

    Google Scholar 

  • Heinz H, Farmer BL, Pandey RB et al (2009) Nature of molecular interactions of peptides with gold, palladium and pd-au bimetal surfaces in aqueous solution. J Am Chem Soc 131(28):9704–9714

    Article  CAS  PubMed  Google Scholar 

  • Hickey AM, Ngamsom B, Wiles C et al (2009) A microreactor for the study of biotransformations by a cross-linked γ-lactamase enzyme. Biotechnol J 4(4):510–516

    Article  CAS  PubMed  Google Scholar 

  • Hidalgo A, Betancor L, Lopez-Gallego F et al (2003) Design of an immobilized preparation of catalase from Thermus thermophilus to be used in a wide range of conditions: structural stabilization of a multimeric enzyme. Enzyme Microb Technol 33(2–3):278–285

    Article  CAS  Google Scholar 

  • Hnilova M, Oren EE, Seker UOS et al (2008) Effect of molecular conformations on the adsorption behavior of gold-binding peptides. Langmuir 24(21):12440–12445

    Article  CAS  PubMed  Google Scholar 

  • Ho L-F, Li S-Y, Lin S-C et al (2004) Integrated enzyme purification and immobilization processes with immobilized metal affinity adsorbents. Process Biochem 39(11):1573–1581

    Article  CAS  Google Scholar 

  • Ho MT, Allinson GW, Wiley DE (2008) Reducing the cost of CO2 capture from flue gases using membrane technology. Ind Eng Chem Res 47(5):1562–1568

    Article  CAS  Google Scholar 

  • Hodgman CE, Jewett MC (2012) Cell-free synthetic biology: thinking outside the cell. Metab Eng 14(3):261–269

    Article  CAS  PubMed  Google Scholar 

  • Hoess RH (2001) Protein design and phage display. Chem Rev 101(10):3205–3218

    Article  CAS  PubMed  Google Scholar 

  • Hollinshead W, He L, Tang YJ (2014) Biofuel production: an odyssey from metabolic engineering to fermentation scale-up. Front Microbiol 5:344

    Article  PubMed  PubMed Central  Google Scholar 

  • Huang Y, Chiang C-Y, Lee SK et al (2005) Programmable assembly of nanoarchitectures using genetically engineered viruses. Nano Lett 5(7):1429–1434

    Article  CAS  PubMed  Google Scholar 

  • Hudson S, Cooney J, Magner E (2008) Proteins in mesoporous silicates. Angew Chem Int Ed 47(45):8582–8594

    Article  CAS  Google Scholar 

  • Hui KS, Chao CYH (2008) Methane emissions abatement by multi-ion-exchanged zeolite A prepared from both commercial-grade zeolite and coal fly ash. Environ Sci Technol 42(19):7392–7397

    Article  CAS  PubMed  Google Scholar 

  • Ikeda T, Kuroda A (2011) Why does the silica-binding protein “Si-tag” bind strongly to silica surfaces? Implications of conformational adaptation of the intrinsically disordered polypeptide to solid surfaces. Colloids Surf B Biointerfaces 86(2):359–363

    Article  CAS  PubMed  Google Scholar 

  • Ikeda T, Hata Y, Ninomiya K-i et al (2009) Oriented immobilization of antibodies on a silicon wafer using Si-tagged protein A. Anal Biochem 385(1):132–137

    Article  CAS  PubMed  Google Scholar 

  • Inoue I, Watanabe K, Yamauchi H et al (2014) Biological construction of single-walled carbon nanotube electron transfer pathways in dye-sensitized solar cells. ChemSusChem 7(10):2805–2810

    Article  CAS  PubMed  Google Scholar 

  • Johnson A, Zawadzka A, Deobald L et al (2008) Novel method for immobilization of enzymes to magnetic nanoparticles. J Nanopart Res 10(6):1009–1025

    Article  CAS  Google Scholar 

  • Jørgensen F, Hansen OC, Stougaard P (2004) Enzymatic conversion of d-galactose to d-tagatose: heterologous expression and characterisation of a thermostable l-arabinose isomerase from Thermoanaerobacter mathranii. Appl Microbiol Biotechnol 64(6):816–822

    Article  PubMed  CAS  Google Scholar 

  • Kacar T, Ray J, Gungormus M et al (2009a) Quartz binding peptides as molecular linkers towards fabricating multifunctional micropatterned substrates. Adv Mater 21(3):295–299

    Article  CAS  Google Scholar 

  • Kacar T, Zin MT, So C et al (2009b) Directed self-immobilization of alkaline phosphatase on micro-patterned substrates via genetically fused metal-binding peptide. Biotechnol Bioeng 103(4):696–705

    Article  CAS  PubMed  Google Scholar 

  • Kanbar B, Ozdemir E (2010) Thermal stability of carbonic anhydrase immobilized within polyurethane foam. Biotechnol Prog 26(5):1474–1480

    Article  CAS  PubMed  Google Scholar 

  • Kataeva I, Foston MB, Yang S-J et al (2013) Carbohydrate and lignin are simultaneously solubilized from unpretreated switchgrass by microbial action at high temperature. Energy Environ Sci 6(7):2186–2195

    Article  CAS  Google Scholar 

  • Khare SD, Fleishman SJ (2013) Emerging themes in the computational design of novel enzymes and protein–protein interfaces. FEBS Lett 587(8):1147–1154

    Article  CAS  PubMed  Google Scholar 

  • Kim J, Lin L-C, Swisher JA et al (2012) Predicting large CO2 adsorption in aluminosilicate zeolites for postcombustion carbon dioxide capture. J Am Chem Soc 134(46):18940–18943

    Article  CAS  PubMed  Google Scholar 

  • Kjaergaard K, Sørensen JK, Schembri MA et al (2000) Sequestration of zinc oxide by fimbrial designer chelators. Appl Environ Microbiol 66(1):10–14

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Klint D, Eriksson H (1997) Conditions for the adsorption of proteins on ultrastable zeolite Y and its use in protein purification. Protein Expr Purif 10(2):247–255

    Article  CAS  PubMed  Google Scholar 

  • Ko S, Park TJ, Kim H-S et al (2009) Directed self-assembly of gold binding polypeptide-protein A fusion proteins for development of gold nanoparticle-based SPR immunosensors. Biosens Bioelectron 24(8):2592–2597

    Article  CAS  PubMed  Google Scholar 

  • Kogel JE, Trivedi NC, Barker JM et al (2006) Industrial minerals & rocks: commodities, markets, and uses, 7th edn. Society for Mining, Metallurgy, and Exploration, Littleton

    Google Scholar 

  • Kosuri S, Church GM (2014) Large-scale de novo DNA synthesis: technologies and applications. Nat Methods 11(5):499–507

    Article  CAS  PubMed  Google Scholar 

  • Kress J, Zanaletti R, Amour A et al (2002) Enzyme accessibility and solid supports: which molecular weight enzymes can be used on solid supports? An investigation using confocal Raman microscopy. Chem Eur J 8(16):3769–3772

    Article  CAS  PubMed  Google Scholar 

  • Kulp JL, Shiba K, Evans JS (2005) Probing the conformational features of a phage display polypeptide sequence directed against single-walled carbon nanohorn surfaces. Langmuir 21(25):11907–11914

    Article  CAS  PubMed  Google Scholar 

  • Kwok R (2010) Five hard truths for synthetic biology. Nature 463(7279):288–290

    Article  CAS  PubMed  Google Scholar 

  • Lamare S, Legoy M-D (1993) Biocatalysis in the gas phase. Trends Biotechnol 11(10):413–418

    Article  CAS  PubMed  Google Scholar 

  • Lee SW, Mao C, Flynn CE et al (2002) Ordering of quantum dots using genetically engineered viruses. Science 296(5569):892–895

    Article  CAS  PubMed  Google Scholar 

  • Lehn C, Schmidt H-L (1997) Stability and stabilization of enzymes from mesophilic and thermophilic organisms in respect to their use in FIA-systems for the determination of L-lactate and acetate. J Chem Technol Biotechnol 69(2):161–166

    Article  CAS  Google Scholar 

  • Li CM, Botsaris GD, Kaplan DL (2002) Selective in vitro effect of peptides on calcium carbonate crystallization. Cryst Growth Des 2(5):387–393

    Article  CAS  Google Scholar 

  • Li YJ, Whyburn GB, Huang Y (2009) Specific peptide regulated synthesis of ultrasmall platinum nanocrystals. J Am Chem Soc 131(44):15998–15999

    Article  CAS  PubMed  Google Scholar 

  • Lichty JJ, Malecki JL, Agnew HD et al (2005) Comparison of affinity tags for protein purification. Protein Expr Purif 41(1):98–105

    Article  CAS  PubMed  Google Scholar 

  • Lind PA, Daniel RM, Monk C et al (2004) Esterase catalysis of substrate vapour: enzyme activity occurs at very low hydration. Biochim Biophys Acta 1702(1):103–110

    Article  CAS  PubMed  Google Scholar 

  • Love DR, Fisher R, Bergquist PL (1988) Sequence structure and expression of a cloned β-glucosidase gene from an extreme thermophile. Mol Gen Genet 213(1):84–92

    Article  CAS  PubMed  Google Scholar 

  • Lu Y, Zhao J, Zhang R et al (2014) Tunable lifetime multiplexing using luminescent nanocrystals. Nat Photon 8(1):32–36

    Article  CAS  Google Scholar 

  • Lynd LR, Weimer PJ, van Zyl WH et al (2002) Microbial cellulose utilization: fundamentals and biotechnology. Microbiol Mol Biol Rev 66(3):506–577

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Magner E (2013) Immobilisation of enzymes on mesoporous silicate materials. Chem Soc Rev 42(15):6213–6222

    Article  CAS  PubMed  Google Scholar 

  • Masica DL, Schrier SB, Specht EA et al (2010) De novo design of peptide-calcite biomineralization systems. J Am Chem Soc 132:12252–12262

    Article  CAS  PubMed  Google Scholar 

  • Miroliaei M (2007) Studies on the activity and stability of immobilized thermophilic alcohol dehydrogenase. Sci Iranica 14(2):112–117

    CAS  Google Scholar 

  • Morris DD, Gibbs MD, Chin CW et al (1998) Cloning of the xynB gene from Dictyoglomus thermophilum Rt46B.1 and action of the gene product on kraft pulp. Appl Environ Microbiol 64(5):1759–1765

    CAS  PubMed  PubMed Central  Google Scholar 

  • Mueller S, Coleman JR, Wimmer E (2009) Putting synthesis into biology: a viral view of genetic engineering through de novo gene and genome synthesis. Chem Biol 16(3):337–347

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Mullaney PF (1966) Dry thermal inactivation of trypsin and ribonuclease. Nature 210(5039):953

    Article  CAS  PubMed  Google Scholar 

  • Naber JE, de Jong KP, Stork WHJ et al (1994) Industrial applications of zeolite catalysis. In: Weitkamp J, Karge HG, Pfeifer H, Hölderich W (eds) Studies in surface science and catalysis, vol 84. Elsevier, Amsterdam, pp 2197–2219

    Google Scholar 

  • Naik RR, Brott LL, Clarson SJ et al (2002a) Silica-precipitating peptides isolated from a combinatorial phage display peptide library. J Nanosci Nanotechnol 2(1):95–100

    Article  CAS  PubMed  Google Scholar 

  • Naik RR, Stringer SJ, Agarwal G et al (2002b) Biomimetic synthesis and patterning of silver nanoparticles. Nat Mater 1(3):169–172

    Article  CAS  PubMed  Google Scholar 

  • Nel AE, Madler L, Velegol D et al (2009) Understanding biophysicochemical interactions at the nano-bio interface. Nat Mater 8(7):543–557

    Article  CAS  PubMed  Google Scholar 

  • Ngamsom B, Hickey AM, Greenway GM et al (2010) Development of a high throughput screening tool for biotransformations utilising a thermophilic l-aminoacylase enzyme. J Mol Catal B: Enzym 63(1–2):81–86

    Article  CAS  Google Scholar 

  • Nochomovitz R, Amit M, Matmor M et al (2010) Bioassisted multi-nanoparticle patterning using single-layer peptide templates. Nanotechnology 21(14):145305

    Article  PubMed  CAS  Google Scholar 

  • Notman R, Oren EE, Tamerler C et al (2010) Solution study of engineered quartz binding peptides using replica exchange molecular dynamics. Biomacromolecules 11(12):3266–3274

    Google Scholar 

  • Nygaard S, Wendelbo R, Brown S (2002) Surface-specific zeolite-binding proteins. Adv Mater 14(24):1853–1856

    Article  CAS  Google Scholar 

  • Opwis K, Knittel D, Bahners T et al (2005) Photochemical enzyme immobilization on textile carrier materials. Eng Life Sci 5(1):63–67

    Article  CAS  Google Scholar 

  • Opwis K, Straube T, Kiehl K et al (2014) Various strategies for the immobilization of biocatalysts on textile carrier materials. Chem Eng Trans 38:223–238

    Google Scholar 

  • Oren EE, Tamerler C, Sahin D et al (2007) A novel knowledge-based approach to design inorganic binding peptides. Bioinformatics 23(21):2816–2822

    Google Scholar 

  • Oren EE, Notman R, Kim IW et al (2010) Probing the molecular mechanisms of quartz-binding peptides. Langmuir 26:11003–11009

    Article  CAS  PubMed  Google Scholar 

  • Palomo JM, Segura RL, Mateo C et al (2004) Improving the activity of lipases from thermophilic organisms at mesophilic temperatures for biotechnology applications. Biomacromolecules 5(1):249–254

    Article  CAS  PubMed  Google Scholar 

  • Park TJ, Zheng S, Kang YJ et al (2009) Development of a whole-cell biosensor by cell surface display of a gold-binding polypeptide on the gold surface. FEMS Microbiol Lett 293(1):141–147

    Article  CAS  PubMed  Google Scholar 

  • Pasunooti S, Surya W, Tan SN et al (2010) Sol–gel immobilization of a thermophilic diguanylate cyclase for enzymatic production of cyclic-di-GMP. J Mol Catal B: Enzym 67(1–2):98–103

    Article  CAS  Google Scholar 

  • Patolsky F, Zheng G, Lieber CM (2006) Fabrication of silicon nanowire devices for ultrasensitive, label-free, real-time detection of biological and chemical species. Nat Protoc 1(4):1711–1724

    Article  CAS  PubMed  Google Scholar 

  • Pender MJ, Sowards LA, Hartgerink JD et al (2006) Peptide-mediated formation of single-wall carbon nanotube composites. Nano Lett 6(1):40–44

    Article  CAS  PubMed  Google Scholar 

  • Pessela BCC, Mateo C, Fuentes M et al (2004) Stabilization of a multimeric β-galactosidase from Thermus sp. strain T2 by immobilization on novel heterofunctional epoxy supports plus aldehyde-dextran cross-linking. Biotechnol Prog 20(1):388–392

    Article  CAS  PubMed  Google Scholar 

  • Pierre AC (2004) The sol-gel encapsulation of enzymes. Biocatal Biotransfor 22(3):145–170

    Article  CAS  Google Scholar 

  • Pierre AC (2012) Enzymatic carbon dioxide capture. ISRN Chem Eng 2012:22

    Article  CAS  Google Scholar 

  • Piller K, Daniel RM, Petach HH (1996) Properties and stabilization of an extracellular alpha-glucosidase from the extremely thermophilic archaebacteria Thermococcus strain AN1: enzyme activity at 130 degrees C. Biochim Biophys Acta 1292(1):197–205

    Article  PubMed  Google Scholar 

  • Popat A, Hartono SB, Stahr F et al (2011) Mesoporous silica nanoparticles for bioadsorption, enzyme immobilisation, and delivery carriers. Nanoscale 3(7):2801–2818

    Article  CAS  PubMed  Google Scholar 

  • Puddu V, Perry CC (2012) Peptide adsorption on silica nanoparticles: evidence of hydrophobic interactions. ACS Nano 6(7):6356–6363

    Article  CAS  PubMed  Google Scholar 

  • Puri M, Barrow CJ, Verma ML (2013) Enzyme immobilization on nanomaterials for biofuel production. Trends Biotechnol 31(4):215–216

    Article  CAS  PubMed  Google Scholar 

  • Raghuvanshi S, Gupta R (2010) Advantages of the immobilization of lipase on porous supports over free enzyme. Protein Pept Lett 17(11):1412–1416

    Article  CAS  PubMed  Google Scholar 

  • Raia CA, D’Auria S, Guagliardi A et al (1995) Characterization of redox proteins from extreme thermophilic archaebacteria: studies on alcohol dehydrogenase and thioredoxins. Biosens Bioelectron 10(1–2):135–140

    Article  CAS  Google Scholar 

  • Rhodes CJ (2010) Properties and applications of zeolites. Sci Prog 93(Pt 3):223–284

    Article  CAS  PubMed  Google Scholar 

  • Rocha-Martin J, Vega DE, Cabrera Z et al (2009) Purification, immobilization and stabilization of a highly enantioselective alcohol dehydrogenase from Thermus thermophilus HB27 cloned in E. coli. Process Biochem 44(9):1004–1012

    Article  CAS  Google Scholar 

  • Roy MD, Stanley SK, Amis EJ et al (2008) Identification of a highly specific hydroxyapatite-binding peptide using phage display. Adv Mater 20(10):1830–1836

    Article  CAS  Google Scholar 

  • Sano K-I, Miura A, Yoshii S et al (2013) Nonvolatile flash memory based on biologically integrated hierarchical nanostructures. Langmuir 29(40):12483–12489

    Article  CAS  PubMed  Google Scholar 

  • Sapsford KE, Algar WR, Berti L et al (2013) Functionalizing nanoparticles with biological molecules: developing chemistries that facilitate nanotechnology. Chem Rev 113(3):1904–2074

    Article  CAS  PubMed  Google Scholar 

  • Sarikaya M, Tamerler C, Jen AKY et al (2003) Molecular biomimetics: nanotechnology through biology. Nat Mater 2(9):577–585

    Article  CAS  PubMed  Google Scholar 

  • Sassolas A, Blum LJ, Leca-Bouvier BD (2012) Immobilization strategies to develop enzymatic biosensors. Biotechnol Adv 30(3):489–511

    Article  CAS  PubMed  Google Scholar 

  • Savile CK, Lalonde JJ (2011) Biotechnology for the acceleration of carbon dioxide capture and sequestration. Curr Opin Biotechnol 22(6):818–823

    Article  CAS  PubMed  Google Scholar 

  • Seeman NC, Belcher AM (2002) Emulating biology: building nanostructures from the bottom up. Proc Natl Acad Sci U S A 99(2):6451–6455

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Seker UOS, Wilson B, Dincer S et al (2007) Adsorption behavior of linear and cyclic genetically engineered platinum binding peptides. Langmuir 23(15):7895–7900

    Article  CAS  PubMed  Google Scholar 

  • Serizawa T, Techawanitchai P, Matsuno H (2007) Isolation of peptides that can recognize syndiotactic polystyrene. ChemBioChem 8(9):989–993

    Article  CAS  PubMed  Google Scholar 

  • Sharma A, Bhattacharya A, Shrivastava A (2011) Biomimetic CO2 sequestration using purified carbonic anhydrase from indigenous bacterial strains immobilized on biopolymeric materials. Enzyme Microb Technol 48(4–5):416–426

    Article  CAS  PubMed  Google Scholar 

  • Sheldon RA (2011) Characteristic features and biotechnological applications of cross-linked enzyme aggregates (CLEAs). Appl Microbiol Biotechnol 92(3):467–477

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Sheldon RA, van Pelt S (2013) Enzyme immobilisation in biocatalysis: why, what and how. Chem Soc Rev 42(15):6223–6235

    Article  CAS  PubMed  Google Scholar 

  • Simpson HD, Haufler UR, Daniel RM (1991) An extremely thermostable xylanase from the thermophilic eubacterium Thermotoga. Biochem J 277(Pt 2):413–417

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Slocik JM, Naik RR (2014) Peptide-nanoparticle strategies, interactions and challenges. In: Walsh TR, Knecht MR (eds) Bio-inspired nanotechnology. Springer, New York, pp 1–16

    Chapter  Google Scholar 

  • Smith GP (1985) Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface. Science 228(4705):1315–1317

    Article  CAS  PubMed  Google Scholar 

  • So CR, Kulp JL, Oren EE et al (2009) Molecular recognition and supramolecular self-assembly of a genetically engineered gold binding peptide on Au{111}. ACS Nano 3(6):1525–1531

    Article  CAS  PubMed  Google Scholar 

  • Sunna A (2010) Modular organisation and functional analysis of dissected modular β-mannanase CsMan26 from Caldicellulosiruptor Rt8B.4. Appl Microbiol Biotechnol 86(1):189–200

    Article  CAS  PubMed  Google Scholar 

  • Sunna A, Bergquist PL (2003) A gene encoding a novel extremely thermostable 1,4-β-xylanase isolated directly from an environmental DNA sample. Extremophiles 7(1):63–70

    CAS  PubMed  Google Scholar 

  • Sunna A, Gibbs MD, Bergquist PL (2000) A novel thermostable multidomain 1,4-β-xylanase from ‘Caldibacillus cellulovorans’ and effect of its xylan-binding domain on enzyme activity. Microbiology 146(11):2947–2955

    Article  CAS  PubMed  Google Scholar 

  • Sunna A, Chi F, Bergquist PL (2013a) A linker peptide with high affinity towards silica-containing materials. N Biotechnol 30(5):485–492

    Article  CAS  PubMed  Google Scholar 

  • Sunna A, Chi F, Bergquist PL (2013b) Efficient capture of pathogens with a zeolite matrix. Parasitol Res 112(7):2441–2452

    Article  PubMed  Google Scholar 

  • Taguchi H, Matsuzawa H, Ohta T (1984) l-Lactate dehydrogenase from Thermus caldophilus GK24, an extremely thermophilic bacterium. Eur J Biochem 145(2):283–290

    Article  CAS  PubMed  Google Scholar 

  • Tamerler C, Oren EE, Duman M et al (2006) Adsorption kinetics of an engineered gold binding peptide by surface plasmon resonance spectroscopy and a quartz crystal microbalance. Langmuir 22(18):7712–7718

    Article  CAS  PubMed  Google Scholar 

  • Tamerler C, Khatayevich D, Gungormus M et al (2010) Molecular biomimetics: GEPI-based biological routes to technology. Biopolymers 94(1):78–94

    Article  CAS  PubMed  Google Scholar 

  • Tang Z, Palafox-Hernandez JP, Law WC et al (2013) Biomolecular recognition principles for bionanocombinatorics: an integrated approach to elucidate enthalpic and entropic factors. ACS Nano 7(11):9632–9646

    Article  CAS  PubMed  Google Scholar 

  • Taniguchi K, Nomura K, Hata Y et al (2007) The Si-tag for immobilizing proteins on a silica surface. Biotechnol Bioeng 96(6):1023–1029

    Article  CAS  PubMed  Google Scholar 

  • Tavolaro A, Tavolaro P, Drioli E (2006) Influence of synthesis parameters on vanadium-silicalite-1 crystal growth prepared with fluoride-containing media. J Cryst Growth 289(2):609–616

    Article  CAS  Google Scholar 

  • Teeri TT (1997) Crystalline cellulose degradation: new insight into the function of cellobiohydrolases. Trends Biotechnol 15(5):160–167

    Article  Google Scholar 

  • Thai CK, Dai H, Sastry MSR et al (2004) Identification and characterization of Cu2O- and ZnO-binding polypeptides by Escherichia coli cell surface display. J Biotech Bioeng 87(2):129–137

    Article  CAS  Google Scholar 

  • Tran CTH, Nosworthy NJ, Kondyurin A et al (2013) CelB and β-glucosidase immobilization for carboxymethyl cellulose hydrolysis. RSC Adv 3(45):23604–23611

    Article  CAS  Google Scholar 

  • Trivedi AH, Spiess AC, Daussmann T et al (2006) Study on mesophilic and thermophilic alcohol dehydrogenases in gas-phase reaction. Biotechnol Prog 22(2):454–458

    Article  CAS  PubMed  Google Scholar 

  • Turner P, Mamo G, Karlsson E (2007) Potential and utilization of thermophiles and thermostable enzymes in biorefining. Microb Cell Fact 6(1):9

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  • Umlauf BJ, McGuire MJ, Brown KC (2014) Introduction of plasmid encoding for rare tRNAs reduces amplification bias in phage display biopanning. Biotechniques 58(2):81–84

    Google Scholar 

  • Walsh TR (2014) Fundamentals of peptide-materials interfaces. In: Walsh TR, Knecht MR (eds) Bio-inspired nanotechnology. Springer, New York, pp 17–36

    Chapter  Google Scholar 

  • Wang SQ, Humphreys ES, Chung SY et al (2003) Peptides with selective affinity for carbon nanotubes. Nat Mater 2(3):196–200

    Article  PubMed  CAS  Google Scholar 

  • Whaley SR, English DS, Hu EL et al (2000) Selection of peptides with semiconductor binding specificity for directed nanocrystal assembly. Nature 405(6787):665–668

    Article  CAS  PubMed  Google Scholar 

  • Wilson SA, Peek K, Daniel RM (1994) Immobilization of a proteinase from the extremely thermophilic organism Thermus Rt41A. Biotechnol Bioeng 43(3):225–231

    Article  CAS  PubMed  Google Scholar 

  • Wilson L, Palomo JM, Fernández-Lorente G et al (2006) Improvement of the functional properties of a thermostable lipase from Alcaligenes sp. via strong adsorption on hydrophobic supports. Enzyme Microb Technol 38(7):975–980

    Google Scholar 

  • Wittrup KD (2001) Protein engineering by cell-surface display. Curr Opin Biotechnol 12(4):395–399

    Article  CAS  PubMed  Google Scholar 

  • Wood T, Garcia-Campayo V (1990) Enzymology of cellulose degradation. Biodegradation 1(2–3):147–161

    Article  CAS  Google Scholar 

  • Yadav R, Satyanarayanan T, Kotwal S et al (2011) Enhanced carbonation reaction using chitosan-based carbonic anhydrase nanoparticles. Curr Sci 100(4):520–524

    CAS  Google Scholar 

  • Yang M, Choi BG, Park TJ et al (2011) Site-specific immobilization of gold binding polypeptide on gold nanoparticle-coated graphene sheet for biosensor application. Nanoscale 3(7):2950–2956

    Article  CAS  PubMed  Google Scholar 

  • Ye X, Honda K, Sakai T et al (2012) Synthetic metabolic engineering-a novel, simple technology for designing a chimeric metabolic pathway. Microb Cell Fact 11(1):120

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • You C, Zhang YHP (2013) Cell-free biosystems for biomanufacturing. In: Zhong J-J (ed) Future trends in biotechnology, vol 131. Springer, Berlin, pp 89–119

    Chapter  Google Scholar 

  • Zhang YHP, Myung S, You C et al (2011) Toward low-cost biomanufacturing through in vitro synthetic biology: bottom-up design. J Mater Chem 21(47):18877–18886

    Article  CAS  Google Scholar 

  • Zhou Z, Hartmann M (2012) Recent progress in biocatalysis with enzymes immobilized on mesoporous hosts. Top Catal 55(16–18):1081–1100

    Article  CAS  Google Scholar 

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Care, A., Bergquist, P.L., Sunna, A. (2016). Solid-Binding Peptides: Immobilisation Strategies for Extremophile Biocatalysis in Biotechnology. In: Rampelotto, P. (eds) Biotechnology of Extremophiles:. Grand Challenges in Biology and Biotechnology, vol 1. Springer, Cham. https://doi.org/10.1007/978-3-319-13521-2_23

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