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Can Mass Spectrometry Help Determine Proteins Structure and Interactions?

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Mass Spectrometry: Developmental Approaches to Answer Biological Questions

Part of the book series: SpringerBriefs in Bioengineering ((BRIEFSBIOENG))

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Abstract

The structure and the interaction of proteins are two important information that, in addition to their expression, characterize proteins. The accuracy and the resolution of current mass spectrometers allow the mass measurement of large molecules with high precision. Nevertheless, mass values are not sufficient to provide structure information. In the case of protein interaction, it could provide data on the stoichiometry of the interaction, but no structural details. Several methods have been developed to use mass data and mass spectrometry to decipher the three-dimensional structure of proteins and complexes. However, it is important to note that mass spectrometry completes existing techniques such as crystallography or NMR, allowing the analysis of different proteins or complexes. This chapter presents approaches used in the analysis of proteins structures and complexes involving proteins.

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References

  1. van den Heuvel RH, Heck AJ. Native protein mass spectrometry: from intact oligomers to functional machineries. Curr Opin Chem Biol. 2004;8(5):519–26.

    Article  Google Scholar 

  2. McLafferty FW. Tandem mass spectrometry. Science. 1981;214(4518):280–7.

    Article  CAS  Google Scholar 

  3. Loo JA. Studying noncovalent protein complexes by electrospray ionization mass spectrometry. Mass Spectrom Rev. 1997;16(1):1–23.

    Article  CAS  Google Scholar 

  4. Bakhtiar R, Guan Z. Electron capture dissociation mass spectrometry in characterization of peptides and proteins. Biotechnol Lett. 2006;28(14):1047–59.

    Article  CAS  Google Scholar 

  5. Hall Z, Robinson CV. Do charge state signatures guarantee protein conformations? J Am Soc Mass Spectrom. 2012;23(7):1161–8.

    Article  CAS  Google Scholar 

  6. Ngounou Wetie AG, Sokolowska I, Woods AG, Roy U, Loo JA, Darie CC. Investigation of stable and transient protein-protein interactions: past, present, and future. Proteomics. 2013;13(3–4):538–57.

    Article  CAS  Google Scholar 

  7. Iacob RE, Engen JR. Hydrogen exchange mass spectrometry: are we out of the quicksand? J Am Soc Mass Spectrom. 2012;23(6):1003–10.

    Article  CAS  Google Scholar 

  8. Sharp JS, Becker JM, Hettich RL. Analysis of protein solvent accessible surfaces by photochemical oxidation and mass spectrometry. Anal Chem. 2004;76(3):672–83.

    Article  CAS  Google Scholar 

  9. Kiselar JG, Chance MR. Future directions of structural mass spectrometry using hydroxyl radical footprinting. J Mass Spectrom. 2010;45(12):1373–82.

    Article  CAS  Google Scholar 

  10. Chalmers MJ, Busby SA, Pascal BD, West GM, Griffin PR. Differential hydrogen/deuterium exchange mass spectrometry analysis of protein-ligand interactions. Expert Rev Proteomics. 2011;8(1):43–59.

    Article  CAS  Google Scholar 

  11. Konermann L, Stocks BB, Pan Y, Tong X. Mass spectrometry combined with oxidative labeling for exploring protein structure and folding. Mass Spectrom Rev. 2010;29(4):651–67.

    CAS  Google Scholar 

  12. RCSB Protein Data Bank http://www.rcsb.org/pdb/home/home.do.

  13. Pottiez G, Ciborowski P. Elucidating protein inter- and intramolecular interacting domains using chemical cross-linking and matrix-assisted laser desorption ionization-time of flight/time of flight mass spectrometry. Anal Biochem. 2012;421(2):712–8.

    Article  CAS  Google Scholar 

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Correspondence to Gwenael Pottiez .

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Pottiez, G. (2015). Can Mass Spectrometry Help Determine Proteins Structure and Interactions?. In: Mass Spectrometry: Developmental Approaches to Answer Biological Questions. SpringerBriefs in Bioengineering. Springer, Cham. https://doi.org/10.1007/978-3-319-13087-3_4

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