Abstract
We proposed a new variational model for parallel Magnetic Resonance Imaging (MRI) processing including denoising, deblurring and super-resolution. In the context of Maximum A Posteriori (MAP) estimation it takes into account the non-central \(\chi \) (nc-\(\chi \)) distribution of the noise in parallel magnitude magnetic resonance (MR) images. This leads to the resolution of an energy minimization problem. In this Bayesian modelling framework the Total Generalized Variation (TGV) is proposed as the regularization term. A primal-dual algorithm is then implemented to solve numerically the presented model. The effectiveness of our approach is shown through a successful comparison of its performance to previous TGV methods for MRI denoising based on Gaussian noise.
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References
Roemer, P.B., Edelstein, W.A., Hayes, C.E., Souza, S.P., Mueller, O.M.: The NMR phased array. Magnetic Resonance in Medicine 16(2), 192–225 (1990)
Sodickson, D.K., Manning, W.J.: Simultaneous acquisition of spatial harmonics (SMASH): Fast imaging with radiofrequency coil arrays. Magnetic Resonance in Medicine 38(4), 591–603 (1997)
Pruessmann, K.P., Weiger, M., Scheidegger, M.B., Boesiger, P.: SENSE: sensitivity encoding for fast MRI. Magnetic Resonance in Medicine 42(5), 952–952 (1999)
Griswold, M.A., Jakob, P.M., Heidemann, R.M., Nittka, M., Jellus, V., Wang, J., Kiefer, B., Haase, A.: Generalized autocalibrating partially parallel acquisitions (GRAPPA). Magnetic Resonance in Medicine 47(6), 1202–1210 (2002)
Blaimer, M., Breuer, F., Mueller, M., Heidemann, R.M., Griswold, M.A., Jakob, P.M.: Smash, sense, pils, grappa. Topics in Magnetic Resonance Imaging 15(4), 223–236 (2004)
Constantinides, C.D., Atalar, E.: Signal-to-Noise Measurements in Magnitude Images from NMR Phased Arrays. Magnetic Resonance in Medicine 38(5), 852–857 (2008)
Dietrich, O., Raya, J.G., Reeder, S.B., Ingrisch, M., Reiser, M.F., Schoenberg, S.O.: Influence of multichannel combination, parallel imaging and other reconstruction techniques on MRI noise characteristics. Magnetic Resonance Imaging 26(6), 754–762 (2008)
Aja-Fernández, S., Tristán-Vega, A., Alberola-López, C.: Noise estimation in single- and multiple-coil magnetic resonance data based on statistical models. Magnetic Resonance Imaging 27(10), 1397–1409 (2009)
Aja-Fernández, S., Tristán-Vega, A., Hoge, W.S.: Statistical noise analysis in GRAPPA using a parametrized noncentral Chi approximation model. Magnetic Resonance in Medicine 65(4), 1195–1206 (2011)
Aja-Fernández, S., Brion, V., Tristán-Vega, A.: Effective noise estimation and filtering from correlated multiple-coil MR data. Magnetic Resonance Imaging (October 2012)
Aja-Fernández, S., Vegas-Sánchez-Ferrero, G., Tristán-Vega, A.: Noise estimation in parallel MRI: GRAPPA and SENSE. Magnetic Resonance Imaging 32(3), 281–290 (2014)
Brion, V., Poupon, C., Riff, O., Aja-Fernández, S., Tristán-Vega, A., Mangin, J.-F., Le Bihan, D., Poupon, F.: Parallel MRI noise correction: an extension of the LMMSE to non central \(\chi \) distributions. In: Fichtinger, G., Martel, A., Peters, T. (eds.) MICCAI 2011, Part II. LNCS, vol. 6892, pp. 226–233. Springer, Heidelberg (2011)
Rajan, J., Veraart, J., Van Audekerke, J., Verhoye, M., Sijbers, J.: Nonlocal maximum likelihood estimation method for denoising multiple-coil magnetic resonance images. Magnetic Resonance Imaging (July 2012)
Bredies, K., Kunisch, K., Pock, T.: Total Generalized Variation. SIAM Journal on Imaging Sciences 3(3), 492–526 (2010)
Knoll, F., Bredies, K., Stollberger, R., Pock, T.: Second Order Total Generalized Variation (TGV) for MRI. Magnetic Resonance in Medicine 65(2), 480–491 (2011)
Valkonen, T., Bredies, K., Knoll, F.: Total Generalized Variation in Diffusion Tensor Imaging. SIAM Journal on Imaging Sciences 6(1), 487–525 (2013)
Martín, A., Schiavi, E.: Automatic Total Generalized Variation-Based DTI Rician Denoising. In: Kamel, M., Campilho, A. (eds.) ICIAR 2013. LNCS, vol. 7950, pp. 581–588. Springer, Heidelberg (2013)
Chan, T.F., Shen, J.: Image Processing and Analysis: variational, PDE, wavelet, and stochastic methods. Society for Industrial and Applied Mathematics (2005)
Scherzer, O., Grasmair, M., Grossauer, H., Haltmeier, M., Lenzen, F.: Variational Methods in Imaging. Springer (2009)
Chambolle, A., Pock, T.: A first-order primal-dual algorithm for convex problems with applications to imaging. Journal of Mathematical Imaging and Vision 40(1), 120–145 (2011)
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Martín, A., Schiavi, E. (2014). Noise Modelling in Parallel Magnetic Resonance Imaging: A Variational Approach. In: Campilho, A., Kamel, M. (eds) Image Analysis and Recognition. ICIAR 2014. Lecture Notes in Computer Science(), vol 8814. Springer, Cham. https://doi.org/10.1007/978-3-319-11758-4_14
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DOI: https://doi.org/10.1007/978-3-319-11758-4_14
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