Abstract
In the developed countries, life expectancy has increased dramatically, especially during the past few decades. However, in addition to living longer, people also wish to remain healthy in old age. Functional food may help to achieve this desire. Consequently, there are a lot of opportunities in the development of bioactive ingredients which promote health and wellness. Naturally, this must be achieved with consumers’ safety in mind. One possible way to balance innovation hurdle and safety is to repurpose known molecules. Candidates may be innocuous natural products from edible sources, or molecules from the Generally Recognized as Safe (GRAS) list. Here, we describe the use of reverse pharmacognosy, and particularly our in silico approach with SelnergyTM, to accelerate the discovery of new applications for existing food ingredients, either per se or as possible starting points in the development of new but related molecules. We describe examples of natural substances and GRAS flavor molecules, with an emphasis on anti-inflammatory effects.
Dedication—This chapter is dedicated to the memory of John Sciré, who sadly passed away in November 2013. It was largely through his efforts and his enthusiasm that work on the flavorings was able to be undertaken.
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References
Bernard P, Scior T, Didier B, Hibert M, Berthon JY (2001) Ethnopharmacology and bioinformatic combination for leads discovery: application to phospholipase A(2) inhibitors. Phytochemistry 58(6):865–874
Billard C, Izard JC, Roman V, Kern C, Mathiot C, Mentz F, Kolb JP (2002) Comparative antiproliferative and apoptotic effects of resveratrol, epsilon-viniferin and vine-shots derived polyphenols (vineatrols) on chronic B lymphocytic leukemia cells and normal human lymphocytes. Leuk Lymphoma 43(10):1991–2002
Blondeau S, Do QT, Scior T, Bernard P, Morin-Allory L (2010) Reverse pharmacognosy: another way to harness the generosity of nature. Curr Pharm Des 16(15):1682–1696
Bonnelye E, Aubin JE (2005) Estrogen receptor-related receptor alpha: a mediator of estrogen response in bone. J Clin Endocrinol Metab 90(5):3115–3121
Bowe J, Li XF, Kinsey-Jones J, Heyerick A, Brain S, Milligan S, O’Byrne K (2006) The hop phytoestrogen, 8-prenylnaringenin, reverses the ovariectomy-induced rise in skin temperature in an animal model of menopausal hot flushes. J Endocrinol 191(2):399–405
Bruneton J (1993) Pharmacognosie, Phytochimie, Plantes Médicinales. Lavoisier, Paris, p viii
Chang WT, Huang WC, Liou CJ (2012) Evaluation of the anti-inflammatory effects of phloretin and phlorizin in lipopolysaccharide-stimulated mouse macrophages. Food Chem 134(2):972–979
Cho HS, Lee JH, Ryu SY, Joo SW, Cho MH, Lee J (2013) Inhibition of Pseudomonas aeruginosa and Escherichia coli O157:H7 biofilm formation by plant metabolite ε-viniferin. J Agric Food Chem 61(29):7120–7126
Choi SH, Langenbach R, Bosetti F (2008) Genetic deletion or pharmacological inhibition of cyclooxygenase-1 attenuate lipopolysaccharide-induced inflammatory response and brain injury. FASEB J 22(5):1491–1501
Clark RD (1997) OptiSim: an extended dissimilarity selection method for finding diverse representative subsets. J Chem Inf Comput Sci 37(6):1181–1188
Cohen PG (2001) Aromatase, adiposity, aging and disease. The hypogonadal-metabolic- atherogenic-disease and aging connection. Med Hypotheses 56(6):702–708
Cramer RD, Jilek RJ, Guessregen S, Clark SJ, Wendt B, Clark RD (2004) Lead hopping. Validation of topomer similarity as a superior predictor of similar biological activities. J Med Chem 47(27):6777–6791
Cuzzocrea S, Crisafulli C, Mazzon E, Esposito E, Muia C, Abdelrahman M, Di Paola R, Thiemermann C (2006) Inhibition of glycogen synthase kinase-3β attenuates the development of carrageenan-induced lung injury in mice. Br J Pharmacol 149(6):687–702
de Araujo Junqueira AF, Dias AA, Vale ML, Spilborghs GM, Bossa AS, Lima BB, Carvalho AF, Guerrant RL, Ribeiro RA, Brito GA (2011) Adenosine deaminase inhibition prevents Clostridium difficile toxin A-induced enteritis in mice. Infect Immun 79(2):653–662
Do QT, Bernard P (2004) Pharmacognosy and reverse pharmacognosy: a new concept for accelerating natural drug discovery. IDrugs 7(11):1017–1027
Do QT, Renimel I, Andre P, Lugnier C, Muller CD, Bernard P (2005) Reverse pharmacognosy: application of selnergy, a new tool for lead discovery. The example of epsilon-viniferin. Curr Drug Discov Technol 2(3):161–167
Do QT, Lamy C, Renimel I, Sauvan N, André P, Himbert F, Morin-Allory L, Bernard P (2007) Reverse pharmacognosy: identifying biological properties for plants by means of their molecule constituents: application to meranzin. Planta Med 73(12):1235–1240
Fu J, Jin J, Cichewicz RH, Hageman SA, Ellis TK, Xiang L, Peng Q, Jiang M, Arbez N, Hotaling K, Ross CA, Duan W (2012) Trans-(-)-ε-viniferin increases mitochondrial sirtuin 3 (SIRT3), activates AMP-activated protein kinase (AMPK), and protects cells in models of Huntington disease. J Biol Chem 287(29):24460–24472
Furuhashi M, Tuncman G, Görgün CZ, Makowski L, Atsumi G, Vaillancourt E, Kono K, Babaev VR, Fazio S, Linton MF, Sulsky R, Robl JA, Parker RA, Hotamisligil GS (2007) Treatment of diabetes and atherosclerosis by inhibiting fatty-acid-binding protein aP2. Nature 447(7147):959–965
Gong J, Cai C, Liu X, Ku X, Jiang H, Gao D, Li H (2013) ChemMapper: a versatile web server for exploring pharmacology and chemical structure association based on molecular 3D similarity method. Bioinformatics 29(14):1827–1829
Gaulton A, Bellis LJ, Bento AP, Chambers J, Davies M, Hersey A, Light Y, McGlinchey S, Michalovich D, Al-Lazikani B, Overington JP (2012) ChEMBL: a large-scale bioactivity database for drug discovery. Nucleic Acids Res 40(Database issue):D1100–D1107
Hallagan JB, Hall RL (1995) FEMA GRAS—a GRAS assessment program for flavor ingredients. Regul Toxicol Pharmacol 21:422–430
Hallagan JB, Hall RL (2009) Review: under the conditions of intended use—new developments in the FEMA GRAS program and the safety assessment of flavor ingredients. Food Chem Toxicol 47:267–278
Harper JI, Godwin H, Green A, Wilkes LE, Holden NJ, Moffatt M, Cookson WO, Layton G, Chandler S (2010) A study of matrix metalloproteinase expression and activity in atopic dermatitis using a novel skin wash sampling assay for functional biomarker analysis. Br J Dermatol 162(2):397–403
Haruta K, Mori S, Tamura N, Sasaki A, Nagamine M, Yaguchi S, Kamachi F, Enami J, Kobayashi S, Yamori T, Takasaki Y (2012) Inhibitory effects of ZSTK474, a phosphatidylinositol 3-kinase inhibitor, on adjuvant-induced arthritis in rats. Inflamm Res 61(6):551–562
Hasler CM (2002) Functional foods: benefits, concerns and challenges—a position paper from the american council on science and health. J Nutr 132(12):3772–3781
Herre S, Schadendorf T, Ivanov I, Herrberger C, Steinle W, Ruck-Braun K, Preissner R, Kuhn H (2006) Photoactivation of an inhibitor of the 12/15-lipoxygenase pathway. Chembiochem 7(7):1089–1095
Hert J, Willett P, Wilton DJ, Acklin P, Azzaoui K, Jacoby E, Schuffenhauer A (2004) Comparison of fingerprint-based methods for virtual screening using multiple bioactive reference structures. J Chem Inf Comput Sci 44(3):1177–1185
Hutter MC (2011) Graph-based similarity concepts in virtual screening. Future Med Chem 3(4):485–501
Huwiler A, Feuerherm AJ, Sakem B, Pastukhov O, Filipenko I, Nguyen T, Johansen B (2012) The?3-polyunsaturated fatty acid derivatives AVX001 and AVX002 directly inhibit cytosolic phospholipase A(2) and suppress PGE(2) formation in mesangial cells. Br J Pharmacol 167(8):1691–1701
John-Baptiste AA, Wu W, Rochon P, Anderson GM, Bell CM (2013) A systematic review and methodological evaluation of published cost-effectiveness analyses of aromatase inhibitors versus tamoxifen in early stage breast cancer. PLoS ONE 8(5):e62614
Kaiser J (2005) Science resources. Chemists want NIH to curtail database. Science 308(5723):774
Keiser MJ, Roth BL, Armbruster BN, Ernsberger P, Irwin JJ, Shoichet BK (2007) Relating protein pharmacology by ligand chemistry. Nat Biotechnol 25(2):197–206
Knox C, Law V, Jewison T, Liu P, Ly S, Frolkis A, Pon A, Banco K, Mak C, Neveu V, Djoumbou Y, Eisner R, Guo AC, Wishart DS (2011) DrugBank 3.0: a comprehensive resource for ‘omics’ research on drugs. Nucleic Acids Res 39(Database issue):D1035–D1041
Langcake P (1981) Disease resistance of Vitis spp. and the production of the stress metabolites resveratrol, ε-viniferin, α-viniferin and pterostilbene. Physiol Plant Pathol 18:213–226
Langcake P, Bryce RJ (1977) The production of resveratrol and viniferins, by grapevines in response to ultraviolet irradiation. Phytochemistry 16:1193–1196
Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (2001) Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings. Adv Drug Deliv Rev 46(1–3):3–26
Liu T, Lin Y, Wen X, Jorissen RN, Gilson MK (2007) BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities. Nucleic Acids Res 35(Database issue):D198–D201
Mai A, Artico M, Esposito M, Ragno R, Sbardella G, Massa S (2003) Synthesis and biological evaluation of enantiomerically pure pyrrolyl-oxazolidinones as a new class of potent and selective monoamine oxidase type A inhibitors. Farmaco 58(3):231–241
Makowski L, Brittingham KC, Reynolds JM, Suttles J, Hotamisligil GS (2005) The fatty acid-binding protein, aP2, coordinates macrophage cholesterol trafficking and inflammatory activity. Macrophage expression of aP2 impacts peroxisome proliferator-activated receptor gamma and IkappaB kinase activities. J Biol Chem 280(13):12888–12895
Martinez-Mayorga K, Peppard TL, Lopez-Vallejo F, Yongye AB, Medina-Franco JL (2013) Systematic mining of generally recognized as safe (GRAS) flavor chemicals for bioactive compounds. J Agric Food Chem 61(31):7507–7514
Masood A, Huang Y, Hajjhussein H, Xiao L, Li H, Wang W, Hamza A, Zhan CG, O’Donnell JM (2009) Anxiolytic effects of phosphodiesterase-2 inhibitors associated with increased cGMP signaling. J Pharmacol Exp Ther 331(2):690–699
Matter H (1997) Selecting optimally diverse compounds from structure databases: a validation study of two-dimensional and three-dimensional molecular descriptors. J Med Chem 40(8):1219–1229
McClanahan C (2012) Functional foods. BioFiles 7(6):24–33
McDonnell PA, Constantine KL, Goldfarb V, Johnson SR, Sulsky R, Magnin DR, Robl JA, Caulfield TJ, Parker RA, Taylor DS, Adam LP, Metzler WJ, Mueller L, Farmer BT 2nd (2006) NMR structure of a potent small molecule inhibitor bound to human keratinocyte fatty acid-binding protein. J Med Chem 49(16):5013–5017
Medina-Franco JL, Martinez-Mayorga K, Peppard TL, Del Rio A (2012) Chemoinformatic analysis of GRAS (generally recognized as safe) flavor chemicals and natural products. PLoS One 7(11):e50798
Melzig MF, Funke I (2007) Inhibitors of alpha-amylase from plants—a possibility to treat diabetes mellitus type II by phytotherapy? Wien Med Wochenschr 157(13–14):320–324
Mishima S, Matsumoto K, Futamura Y, Araki Y, Ito T, Tanaka T, Iinuma M, Nozawa Y, Akao (2003) Antitumor effect of stilbenoids from Vateria indica against allografted sarcoma S-180 in animal model. J Exp Ther Oncol 3:283–288
Morales J, Dunbar JC, Ram JL (2002) Effect of aldose reductase inhibition on interleukin-1β-induced nitric oxide (NO) synthesis in vascular tissue. Int J Exp Diabetes Res 3(1):11–20
Muthenna P, Suryanarayana P, Gunda SK, Petrash JM, Reddy GB (2009) Inhibition of aldose reductase by dietary antioxidant curcumin: mechanism of inhibition, specificity and significance. FEBS Lett 583(22):3637–3642
Okayama N, Omi H, Okouchi M, Imaeda K, Kato T, Akao M, Imai S, Shimizu M, Fukutomi T, Itoh M (2002) Mechanisms of inhibitory activity of the aldose reductase inhibitor, epalrestat, on high glucose-mediated endothelial injury: neutrophil-endothelial cell adhesion and surface expression of endothelial adhesion molecules. J Diabetes Complications 16(5):321–326
Oshima Y, Namao K, Kamijou A, Matsuoka S, Nakano M, Terao K, Ohizumi Y (1995) Powerful hepatoprotective and hepatotoxic plant oligostilbenes, isolated from the oriental medicinal plant Vitis coignetiae (vitaceae). Experientia 51:63–66
Pavicic T, Steckmeier S, Kerscher M, Korting HC (2009) Evidence-based cosmetics: concepts and applications in photoaging of the skin and xerosis. Wien Klin Wochenschr 121(13–14):431–439
Piver B, Berthou F, Dreano Y, Lucas D (2003) Differential inhibition of human cytochrome P450 enzymes by epsilon-viniferin, the dimer of resveratrol: comparison with resveratrol and polyphenols from alcoholized beverages. Life Sci 73:1199–1213
Privat C, Telo JP, Bernardes-Genisson V, Vieira A, Souchard JP, Nepveu F (2002) Antioxidant properties of trans-epsilon-viniferin as compared to stilbene derivatives in aqueous and nonaqueous media. J Agric Food Chem 50:1213–1217
Rarey M, Stahl M (2001) Similarity searching in large combinatorial chemistry spaces. J Comput Aided Mol Des 15(6):497–520
Rayasam GV, Tulasi VK, Sodhi R, Davis JA, Ray A (2009) Glycogen synthase kinase 3: more than a namesake. Br J Pharmacol 156(6):885–898
Riniker S, Landrum GA (2013) Open-source platform to benchmark fingerprints for ligand-based virtual screening. J Cheminform 5(1):26
Sakuta T, Kanayama T (2006) Marked improvement induced in photoaged skin of hairless mouse by ER36009, a novel RARgamma-specific retinoid, but not by ER35794, an RXR-selective agonist. Int J Dermatol 45(11):1288–1295
Sauter C, Lamanna N, Weiss MA (2008) Pentostatin in chronic lymphocytic leukemia. Expert Opin Drug Metab Toxicol 4(9):1217–1222
Schreyer AM, Blundell TL (2013) CREDO: a structural interactomics database for drug discovery. Database (Oxford) 2013:bat049
Senni K, Gueniche F, Foucault-Bertaud A, Igondjo-Tchen S, Fioretti F, Colliec-Jouault S, Durand P, Guezennec J, Godeau G, Letourneur D (2006) Fucoidan a sulfated polysaccharide from brown algae is a potent modulator of connective tissue proteolysis. Arch Biochem Biophys 445(1):56–64
Shin E, Lee C, Sung SH, Kim YC, Hwang BY, Lee MK (2011) Antifibrotic activity of coumarins from Cnidium monnieri fruits in HSC-T6 hepatic stellate cells. J Nat Med 65(2):370–374
Shoeb M, Yadav UC, Srivastava SK, Ramana KV (2011) Inhibition of aldose reductase prevents endotoxin-induced inflammation by regulating the arachidonic acid pathway in murine macrophages. Free Radic Biol Med 51(9):1686–1696
Smith CJ, Zhang Y, Koboldt CM, Muhammad J, Zweifel BS, Shaffer A, Talley JJ, Masferrer JL, Seibert K, Isakson PC (1998) Pharmacological analysis of cyclooxygenase-1 in inflammation. Proc Natl Acad Sci U S A 95(22):13313–13318
Sprous DG, Salemme FR (2007) A comparison of the chemical properties of drugs and FEMA/FDA notified GRAS chemical compounds used in the food industry. Food Chem Toxicol 45(8):1419–1427
Suckling KE (2009) Phospholipase A2 inhibitors in the treatment of atherosclerosis: a new approach moves forward in the clinic. Expert Opin Investig Drugs 18(10):1425–1430
Takahashi K, Mizukami H, Kamata K, Inaba W, Kato N, Hibi C, Yagihashi S (2012) Amelioration of acute kidney injury in lipopolysaccharide-induced systemic inflammatory response syndrome by an aldose reductase inhibitor, fidarestat. PLoS One 7(1):e30134
Tanabe SI, Grenier D (2008) Macrophage tolerance response to Aggregatibacter actinomycetemcomitans lipopolysaccharide induces differential regulation of tumor necrosis factor-alpha, interleukin-1 β and matrix metalloproteinase 9 secretion. J Periodontal Res 43(3):372–377
Teague SJ, Davis AM, Leeson PD, Oprea T (1999) The Design of Leadlike Combinatorial Libraries. Angew Chem Int Ed Engl 38(24):3743–3748
Thrailkill KM, Clay Bunn R, Fowlkes JL (2009) Matrix metalloproteinases: their potential role in the pathogenesis of diabetic nephropathy. Endocrine 35(1):1–10
van Donkelaar EL, Rutten K, Blokland A, Akkerman S, Steinbusch HW, Prickaerts J (2008) Phosphodiesterase 2 and 5 inhibition attenuates the object memory deficit induced by acute tryptophan depletion. Eur J Pharmacol 600(1–3):98–104
Vaughan MD, Sampson PB, Honek JF (2002) Methionine in and out of proteins: targets for drug design. Curr Med Chem 9(3):385–409
Villena JA, Kralli A (2008) ERRalpha: a metabolic function for the oldest orphan. Trends Endocrinol Metab 19(8):269–276
Wallach I, Lilien R (2009) The protein-small-molecule database, a non-redundant structural resource for the analysis of protein-ligand binding. Bioinformatics 25(5):615–620
Wang ZL, Deng CY, Zheng H, Xie CF, Wang XH, Luo YF, Chen ZZ, Cheng P, Chen LJ (2012) (Z)2-(5-(4-methoxybenzylidene)-2, 4-dioxothiazolidin-3-yl) acetic acid protects rats from CCl(4)-induced liver injury. J Gastroenterol Hepatol 27(5):966–973
Xue L, Godden JW, Bajorath J (2003) Mini-fingerprints for virtual screening: design principles and generation of novel prototypes based on information theory. SAR QSAR Environ Res 14(1):27–40
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The authors wish to thank Robertet Flavors for permission to publish this work, and also Peter Lombardo for carefully reading through the manuscript and for making valuable suggestions.
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Do, Q., Driscoll, M., Slitt, A., Seeram, N., Peppard, T., Bernard, P. (2014). Reverse Pharmacognosy: A Tool to Accelerate the Discovery of New Bioactive Food Ingredients. In: Martinez-Mayorga, K., Medina-Franco, J. (eds) Foodinformatics. Springer, Cham. https://doi.org/10.1007/978-3-319-10226-9_4
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