Skip to main content

2D-PCA Based Tensor Level Set Framework for Vertebral Body Segmentation

  • Conference paper
  • First Online:

Part of the book series: Lecture Notes in Computational Vision and Biomechanics ((LNCVB,volume 17))

Abstract

In this paper, a novel statistical shape modeling method is developed for the vertebral body (VB) segmentation framework. Two-dimensional principal component analysis (2D-PCA) technique is exploited to extract the shape prior. The obtained shape model is then embedded into the image domain to develop a new shape-based segmentation approach. Our framework consists of four main steps: (1) shape model construction using 2D-PCA, (2) the detection of the VB region using the Matched filter, (3) initial segmentation using a new region-based tensor level set model, and (4) registration of the shape priors and initially segmented region to obtain the final segmentation. The proposed method is validated on a Phantom as well as clinical CT images with various Gaussian noise levels. The experimental results show that the noise immunity and the segmentation accuracy of our framework are much higher than scalar level sets approaches. Additionally, the construction of the shape model using 2D-PCA is computationally more efficient than PCA.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   54.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Notes

  1. 1.

    All algorithms are run on a PC with a 2 Ghz Core i7 Quad processor with 6 GB RAM.

References

  1. Abdelmunim, H., Farag, A.A.: Curve/surface representation and evolution using vector level sets with application to the shape-based pattern analysis and machine intelligence. IEEE Trans. 29(6) (2007)

    Google Scholar 

  2. Aslan, M.S., Abdelmunim, H., Farag, A.A., Arnold, B., Mustafa, E., Xiang, P.: A new shape based segmentation framework using statistical and variational methods. In: Proceedings of IEEE International Conference on Image Processing (ICIP) (2011)

    Google Scholar 

  3. Aslan, M.S., Ali, A., Chen, D., Arnold, B., Farag, A.A., Xiang, P.: 3D vertebrae segmentation using graph cuts with shape prior constraints. In: Proceedings of IEEE International Conference on Image Processing (ICIP) (2010)

    Google Scholar 

  4. Aslan, M.S., Ali, A., Farag, A.A., Abdelmunim, H., Arnold, B., Xiang, P.: A new segmentation and registration approach for vertebral body analysis. Proceedings of IEEE International Symposium on Biomedical Imaging (ISBI) (2011)

    Google Scholar 

  5. Aslan, M.S., Ali, A., Farag, A.A., Arnold, B., Chen, D., Xiang P.: 3D vertebrae segmentation in CT images with random noises. In: Proceedings of the International Conference on Pattern Recognition (ICPR’10) (2010)

    Google Scholar 

  6. Aslan, M.S., Ali, A., Rara, H., Arnold, B., Farag, A.A., Fahmi, R., Xiang, P.: A novel 3D segmentation of vertebral bones from volumetric CT images using graph cuts. ISVC’09 (2009)

    Google Scholar 

  7. Aslan, M.S., Mostafa, E., Abdelmunim, H., Shalaby, A., Farag, A.A., Arnold, B.: A novel probabilistic simultaneous segmentation and registration using level set. Proceedings of the International Conference on Image Processing (ICIP) (2011)

    Google Scholar 

  8. Chen, T.F., Vese, L.A.: Active contours without edge. IEEE Trans. Image Process. 10(2), 266–277 (2001)

    Article  Google Scholar 

  9. Kalender, W.A., Felsenberg, D., Genant, H., Fischer, M., Dequeker, J., Reeve, J.: The European spine phantom–a tool for standardization and quality control in spinal bone measurements by DXA and QCT. J. Radiol. 20, 83–92 (1995)

    Google Scholar 

  10. Kaminsky, J., Klinge, P., Bokemeyer, M., Luedemann, W., Samii, M.: Specially adapted interactive tools for an improved 3D-segmentation of the spine. Comput. Med. Imaging Graph. 28(3), 118–127 (2004)

    Article  Google Scholar 

  11. Kang, Y., Engelke, K., Kalender, W.A.: New accurate and precise 3D segmentation method for skeletal structures in volumetric CT data. IEEE Trans. Med. Imaging (TMI) 22(5), 586–598 (2003)

    Article  Google Scholar 

  12. Mastmeyer, A., Engelke, K., Fuchs, C., Kalender, W.A.: A hierarchical 3D segmentation method and the definition of vertebral body coordinate systems for QCT of the lumbar spine. Med. Image Anal. 10(4), 560–577 (2006)

    Article  Google Scholar 

  13. Shalaby, A., Mahmoud, A., Mostafa, E., Abdoulmalek, A., Farag, A.A.: Segmentation framework of vertebral body using 2D-PCA. In: Proceedings of 15th Saudi Technical Exchange Meeting, (STEM’12), Dhahran, Saudi Arabia, pp. 81–85. 17–19 Dec 2012

    Google Scholar 

  14. Wang, B., Gao, X., Tao, D., Li, X.: A unified tensor level set for image segmentation. IEEE Trans. Syst. Man Cybern. 40(3), 857–867 (2010)

    Article  Google Scholar 

  15. Yang, J., Zhang, D., Frangi, A.F., Yang, J.: Two-dimensional PCA: a new approach to appearance based face representation and recognition. IEEE Trans. Pattern Anal. Mach. Intell. 26(1), 131–137 (2004)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ahmed Shalaby .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer International Publishing Switzerland

About this paper

Cite this paper

Shalaby, A., Farag, A., Aslan, M. (2014). 2D-PCA Based Tensor Level Set Framework for Vertebral Body Segmentation. In: Yao, J., Klinder, T., Li, S. (eds) Computational Methods and Clinical Applications for Spine Imaging. Lecture Notes in Computational Vision and Biomechanics, vol 17. Springer, Cham. https://doi.org/10.1007/978-3-319-07269-2_4

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-07269-2_4

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-07268-5

  • Online ISBN: 978-3-319-07269-2

  • eBook Packages: EngineeringEngineering (R0)

Publish with us

Policies and ethics