Abstract
Developing sequencing techniques provide understanding the molecular phylogeny at the whole genome level. The phylogeny derived from 16S rRNA gene is the universally accepted DNA sequence-based method today; so far there is no widely accepted approach to infer phylogenetic relationships from complete genome data. If the entire genome is used, the data reflect organismal evolution, not the evolution on a single gene level. We propose a new method for determination of relationship of bacteria based on whole genome data. The method compares whole genomic DNA sequences in frequency domain. The proposed method was tested on phyla level on 168 bacteria from four phyla and on order level – 121 bacteria from phylum Proteobacteria, class Gammaproteobacteria were classified. The classification on both levels was successful in more than 82%.
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Kubicova, V., Provaznik, I. (2014). Relationship of Bacteria Using Comparison of Whole Genome Sequences in Frequency Domain. In: Piętka, E., Kawa, J., Wieclawek, W. (eds) Information Technologies in Biomedicine, Volume 3. Advances in Intelligent Systems and Computing, vol 283. Springer, Cham. https://doi.org/10.1007/978-3-319-06593-9_35
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DOI: https://doi.org/10.1007/978-3-319-06593-9_35
Publisher Name: Springer, Cham
Print ISBN: 978-3-319-06592-2
Online ISBN: 978-3-319-06593-9
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