Skip to main content

A Survey on Biomedical Knowledge Representation for Robotic Orthopaedic Surgery

  • Chapter
Robot Intelligence Technology and Applications 2

Part of the book series: Advances in Intelligent Systems and Computing ((AISC,volume 274))

  • 4093 Accesses

Abstract

The paper presents a survey of the efforts and methods presented by the research community to represent knowledge to be used, in a machine readable format, in the biomedical field. From the surveyed ontologies, the base ontologies for the conceptual model of the Ontology for Robotic Orthopaedic Surgery (OROSU), are defined. Methods for merging the base ontologies to obtain the OROSU, are discussed, while the under development framework is briefly presented.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 169.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 219.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Gonçalves, P., Almeida, R., Caldas Pinto, J., Vieira, S., Sousa, J.: Image based classification platform: Application to breast cancer diagnosis. In: Cruz-Cunha, M., Miranda, I., Gonçalves, P. (eds.) Handbook of Research on ICTs and Management Systems for Improving Efficiency in Healthcare and Social Care, vol. 1, pp. 595–613. IGI Global (2013)

    Google Scholar 

  2. Yu, A.C.: Methods in biomedical ontology. Journal of Biomedical Informatics 39(3), 252–266 (2006)

    Article  Google Scholar 

  3. Schlenoff, C., Prestes, E., Madhavan, R., Gonçalves, P., Li, H., Balakirsky, S., Kramer, T., Miguelanez, E.: An IEEE standard ontology for robotics and automation. In: Proc of the IEEE/RSJ Intl. Conf. on Intelligent Robots and Systems (IROS), pp. 1337–1342 (2012)

    Google Scholar 

  4. Uciteli, A., Groß, S., Kireyev, S., Herre, H.: An ontologically founded architecture for information systems in clinical and epidemiological research. Journal of Biomedical Semantics (2) (2011)

    Google Scholar 

  5. Herre, H.: General formal ontology (gfo): A foundational ontology for conceptual modelling. In: Poli, R., Healy, M., Kameas, A. (eds.) Theory and Applications of Ontology: Computer Applications, pp. 297–345. Springer, Netherlands (2010)

    Chapter  Google Scholar 

  6. Rodrigues, J., Trombert Paviot, B., Martina, C., Vercherina, P.: Integrating the modelling of en 1828 and galen ccam ontologies with protege: towards a knowledge acquisition tool for surgical procedures. In: Studies in Health Technology and Informatics - Connecting Medical Informatics and Bio-Informatics, vol. 116, pp. 767–772. IOS Press (2005)

    Google Scholar 

  7. Rector, A., Nowlan, W.: The GALEN project. Comput Methods Programs Biomed. 45, 75–78 (1994)

    Article  Google Scholar 

  8. Haidegger, T., Barreto, M., Gonçalves, P., Habib, M.K., Ragavan, V., Li, H., Vaccarella, A., Perrone, R., Prestes, E.: Applied ontologies and standards for service robots. Robotics and Autonomous Systems 61(11), 1215–1223 (2013)

    Article  Google Scholar 

  9. Zweigenbaum, P.: Menelas: Coding and information retrieval from natural language patient discharge summaries. In: Advances in Health Telematics, pp. 82–89. IOS Press (1995)

    Google Scholar 

  10. Spackman, K.A., Campbell, K.E., Cote, R.A.: Snomed rt: A reference terminology for health care. In: J. of the American Medical Informatics Association, pp. 640–644 (1997)

    Google Scholar 

  11. Pisanelli, D.M., Gangemi, A., Steve, G.: An ontological analysis of the umls metathesaurus. Proceedings AMIA 98(5), 810–814 (1998)

    Google Scholar 

  12. Wang, A.Y., Sable, J.H., Spackman, K.A.: The snomed clinical terms development process: refinement and analysis of content. In: Proc AMIA Symp., pp. 845–849 (2002)

    Google Scholar 

  13. Duan, L., Street, W.N., Xu, E.: Healthcare information systems: data mining methods in the creation of a clinical recommender system. Enterprise Information Systems 5(2), 169–181 (2011)

    Article  Google Scholar 

  14. Isern, D., Snchez, D., Moreno, A.: Ontology-driven execution of clinical guidelines. Computer Methods and Programs in Biomedicine 107(2), 122–139 (2012)

    Article  Google Scholar 

  15. Bouamrane, M.M., Rector, A., Hurrell, M.: Experience of using owl ontologies for automated inference of routine pre-operative screening tests. In: Patel-Schneider, P.F., Pan, Y., Hitzler, P., Mika, P., Zhang, L., Pan, J.Z., Horrocks, I., Glimm, B. (eds.) ISWC 2010, Part II. LNCS, vol. 6497, pp. 50–65. Springer, Heidelberg (2010)

    Chapter  Google Scholar 

  16. Bright, T.J., Furuya, E.Y., Kuperman, G.J., Cimino, J.J., Bakken, S.: Development and evaluation of an ontology for guiding appropriate antibiotic prescribing. Journal of Biomedical Informatics 45(1), 120–128 (2012)

    Article  Google Scholar 

  17. Dieng-Kuntz, R., Minier, D., Ruzicka, M., Corby, F., Corby, O., Alamarguy, L.: Building and using a medical ontology for knowledge management and cooperative work in a health care network. Computers in Biology and Medicine 36, 871–892 (2006)

    Article  Google Scholar 

  18. Audette, M., Yang, H., Enquobahrie, A., Finet, J., Barre, S., Jannin, P., Ewend, M.: The application of textbook-based surgical ontologies to neurosurgery simulation requirements. International Journal of Computer Assisted Radiology and Surgery 6(1), 138–143 (2011)

    Google Scholar 

  19. Moigno, S.L., Charlet, J., Bourigault, D., Degoulet, P., Jaulent, M.: Terminology extraction from text to build an ontology in surgical intensive care. In: Proceedings of the AMIA 2002 Annual Symposium, pp. 430–434 (2002)

    Google Scholar 

  20. Neumuth, T., Czygan, M., Goldstein, D., Strauss, G., Meixensberger, J., Burgert, O.: Computer assisted acquisition of surgical process models with a sensors-driven ontology. In: M2CAI Workshop. MICCAI, London (2009)

    Google Scholar 

  21. Mudunuri, R., Burgert, O., Neumuth, T.: Ontological modelling of surgical knowledge. In: Fischer, S., Maehle, E., Reischuk, R. (eds.) GI Jahrestagung. LNI., GI, vol. 154, pp. 1044–1054 (2009)

    Google Scholar 

  22. Neumuth, T., Jannin, P., Strauß, G., Meixensberger, J., Burgert, O.: Validation of knowledge acquisition for surgical process models. Journal of the American Medical Informatics Association 16, 72–80 (2009)

    Article  Google Scholar 

  23. Prestes, E., Carbonera, J.L., Fiorini, S.R., Jorge, V.A., Abel, M., Madhavan, R., Locoro, A., Gonçalves, P., Barreto, M.E., Habib, M., Chibani, A., Gérard, S., Amirat, Y., Schlenoff, C.: Towards a core ontology for robotics and automation. Robotics and Autonomous Systems 61(11), 1193–1204 (2013)

    Article  Google Scholar 

  24. Dogmus, Z., Papantoniou, A., Kilinc, M., Yildirim, S., Erdem, E., Patoglu, V.: Rehabilitation robotics ontology on the cloud. In: IEEE International Conference on Rehabilitation Robotics, ICORR 2013 (2013)

    Google Scholar 

  25. Dhouib, S., Du Lac, N., Farges, J.L., Gerard, S., Hemaissia-Jeannin, M., Lahera-Perez, J., Millet, S., Patin, B., Stinckwich, S.: Control Architecture Concepts and Properties of an Ontology Devoted to Exchanges in Mobile Robotics. In: 6th National Conference on Control Architectures of Robots, Grenoble, France, 24 p. INRIA Grenoble Rhône-Alpes (May 2011)

    Google Scholar 

  26. Perrone, R.: Ontological modeling for Neurosurgery: application to automatic classification of temporal and extratemporal lobe epilepsies (2012)

    Google Scholar 

  27. Abolmaesumi, P., Fichtinger, G., Peters, T., Sakuma, I., Yang, G.Z.: Iintroduction to special section on surgical robotics. IEEE Transactions on Biomedical Engineering 60(4), 887–891 (2013)

    Article  Google Scholar 

  28. Kazanzides, P., Mittelstadt, B., Musits, B., Bargar, W., Zuhars, J., Williamson, B., Cain, P., Carbone, E.: An integrated system for cementless hip replacement. IEEE Engineering in Medicine and Biology Magazine 14(3), 307–313 (1995)

    Article  Google Scholar 

  29. Mako rio, http://www.makosurgical.com/physicians/products/rio (visited November 1, 2013)

  30. Gonçalves, P.: Towards an ontology for orthopaedic surgery, application to hip resurfacing. In: Proceedings of the Hamlyn Symposium on Medical Robotics, London, UK, pp. 61–62 (June 2013)

    Google Scholar 

  31. Noy, N.F., Shah, N.H., Whetzel, P.L., Dai, B., et al.: Bioportal: Ontologies and integrated data resources at the click of a mouse. Nucleic Acids Research 37(s2), 170–173 (2009)

    Article  Google Scholar 

  32. Smith, B., Ashburner, M., Rosse, C., Bard, J., Bug, W., Ceusters, W., et al.: The OBO Foundry: Coordinated evolution of ontologies to support biomedical data integration. National Biotechnology 37, 1251–1255 (2007)

    Article  Google Scholar 

  33. Neumuth, D., Loebe, F., Herre, H., Neumuth, T.: Modeling surgical processes: A four-level translational approach. Artificial Intelligence in Medicine 51, 147–160 (2011)

    Article  Google Scholar 

  34. Lemaignan, S., Ros, R., Mösenlechner, L., Alami, R., Beetz, M.: ORO, a knowledge management module for cognitive architectures in robotics. In: Proc. of the IEEE/RSJ Intl. Conf. on Intelligent Robots and Systems (IROS), pp. 3548–3553 (2010)

    Google Scholar 

  35. Tenorth, M., Beetz, M.: Knowrob—knowledge processing for autonomous personal robots. In: Proc. of the IEEE/RSJ Intl. Conf. on Intelligent Robots and Systems (IROS), pp. 4261–4266 (2009)

    Google Scholar 

  36. Fujita, H., Rudas, I., Fodor, J., Kurematsu, M., Hakura, J.: Fuzzy reasoning for medical diagnosis-based aggregation on different ontologies. In: 2012 7th IEEE International Symposium on Applied Computational Intelligence and Informatics (SACI), pp. 137–146 (2012)

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Paulo J. S. Gonçalves .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer International Publishing Switzerland

About this chapter

Cite this chapter

Gonçalves, P.J.S., Torres, P.M.B. (2014). A Survey on Biomedical Knowledge Representation for Robotic Orthopaedic Surgery. In: Kim, JH., Matson, E., Myung, H., Xu, P., Karray, F. (eds) Robot Intelligence Technology and Applications 2. Advances in Intelligent Systems and Computing, vol 274. Springer, Cham. https://doi.org/10.1007/978-3-319-05582-4_22

Download citation

  • DOI: https://doi.org/10.1007/978-3-319-05582-4_22

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-319-05581-7

  • Online ISBN: 978-3-319-05582-4

  • eBook Packages: EngineeringEngineering (R0)

Publish with us

Policies and ethics