Skip to main content

Structure, Induced Fit and Substrate Recognition of E. coli Branched-Chain Amino Acid Aminotransferase

  • Conference paper
Biochemistry and Molecular Biology of Vitamin B6 and PQQ-dependent Proteins

Summary

Structures of the branched-chain amino acid aminotransferase fromE. coliand its complexes with substrate analogues have been solved by X-ray crystallographic method. BCAT is in a hexameric form, and catalyzes the transamination of branched-chain amino acids. The hexamer can be regarded as the assembly of three dimer units around a 3-fold axis. On binding of the substrate analogue, the flexible loop, which is disordered in the unliganded enzyme, moves toward the active-site entrance and shields the substrate from the solvent region. a-Carboxylate of the substrate directly interacts with an OH group of Tyr and two NH groups of β-turn and indirectly with Arg. The side chain of the branched-chain amino acid is in the cavity formed by aromatic rings and an isopropyl group of the active site residues.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Brünger, A.T., Kuriyan, J. and Karplus, M. (1987) Crystallographic R factor refinement by molecular dynamics.Science 235458–460

    Article  PubMed  Google Scholar 

  • Grishin, N.V., Phillips, M.A. and Goldsmith E.J. (1995) Modeling of the spatial structure of eukaryotic omithine decarboxylases.Protein Sci. 41291–1304.

    Article  PubMed  CAS  Google Scholar 

  • Inoue, K., Kuramitsu, S., Aki, K., Watanabe, Y., Takagi, T., Nishigai, M., Ikai, A. and Kagamiyama, H. (1988) Branched-chain amino acid aminotransferase of Escherichia coli: overproduction and properties.J. Biochem. 104777–784

    PubMed  CAS  Google Scholar 

  • Jäger, J., Moser, M., Sauder, U. and Jansonius, J.N. (1994) Crystal structures ofEscherichia co/iaspartate aminotransferase in two conformations. Comparison of an unliganded open and two liganded closed forms.J. Mol. Biol. 239285–305

    Article  PubMed  Google Scholar 

  • Jansonius, J.N. (1998) Structure, evolution and action of vitamin B6-dependent enzymes. Curr. Opin. Struct. Biol.8759–769.

    Article  PubMed  CAS  Google Scholar 

  • Kuramitsu, S., Ogawa, T., Ogawa, H. and Kagamiyama, H. (1985) Branched-chain amino acid aminotransferase of Escherichia coli: nucleotide sequence of the i1vE gene and the deduced amino acid sequence.J. Biochem. 97993–999

    PubMed  CAS  Google Scholar 

  • McPhalen, C.A., Vincent, M.G., Picot, D. and Jansonius, N.J. (1992) Domain Closure in Mitochondrial Aspartate Aminotransferase.J. Mol. Biol. 227197–213.

    Article  PubMed  CAS  Google Scholar 

  • Miyahara, I., Hirotsu, K., Hayashi, H. and Kagamiyama, H. (1994) X-Ray crystallographic study of pyridoxamine 5’-phosphate-type aspartate aminotransferase fromEscherichia coliin three forms.J. Biochem. 1161001–1012

    PubMed  CAS  Google Scholar 

  • Nakai, T., Okada, K., Akutsu, S., Miyahara, I., Kawaguchi, S., Kato, R., Kuramitsu, S. and Hirotsu, K. (1999) Structure ofThermos thermophilusHB8 Aspartate Aminotransferase and its Complex with Maleate.Biochemistry 382413–1414.

    Article  PubMed  CAS  Google Scholar 

  • Okada, K., Hirotsu, K., Sato, M., Hayashi, H. and Kagamiyama, H. (1997) Three-Dimensional Structure ofEscherichia coliBranched-Chain Amino Acid Aminotransferase at 2.5A Resolution.J.Biochem. 121637–641.

    Article  Google Scholar 

  • Okamoto, A., Higuchi, T., Hirotsu, K., Kuramitsu, S. and Kagamiyama, H. (1994) X-Ray crystallographic study of pyridoxal 5’-phosphate-type aspartate aminotransferase fromEscherichia coliin open and closed form.J. Biochem. 11695–107

    PubMed  CAS  Google Scholar 

  • Peisach, D., Chipman, D.M., Van Ophem, P.W., Manning, J.M. and Ringe, D. (1998) Crystallographic Study of Steps along the Reaction Pathway of D-Amino Acid Aminotransferase.Biochemistry 374958–4967.

    Article  PubMed  CAS  Google Scholar 

  • Sugio, S., Petsko, G.A., Manning, J.M., Soda, K. and Ringe, D. (1995) Crystal structure of a D-amino acid aminotransferase: How the protein controls stereoselectivity.Biochemistry 349661–9669

    Article  PubMed  CAS  Google Scholar 

  • Yoshimura, T., Nishimura, K., Ito, J., Esaki, N., Kagamiyama, H., Manning, J.M. and Soda, K. (1993) Unique stereospecificity of D-amino acid aminotransferase and branched-chain L-amino acid aminotransferase for C-4’..hydrogen transfer of the coenzyme.J. Am. Chem. Soc. 1153897–3900

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2000 Springer Basel AG

About this paper

Cite this paper

Hirotsu, K., Goto, M., Miyahara, I., Hayashi, H., Kagamiyama, H., Okada, K. (2000). Structure, Induced Fit and Substrate Recognition of E. coli Branched-Chain Amino Acid Aminotransferase. In: Iriarte, A., Martinez-Carrion, M., Kagan, H.M. (eds) Biochemistry and Molecular Biology of Vitamin B6 and PQQ-dependent Proteins. Birkhäuser, Basel. https://doi.org/10.1007/978-3-0348-8397-9_31

Download citation

  • DOI: https://doi.org/10.1007/978-3-0348-8397-9_31

  • Publisher Name: Birkhäuser, Basel

  • Print ISBN: 978-3-0348-9549-1

  • Online ISBN: 978-3-0348-8397-9

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics