Skip to main content
SpringerLink
Log in
Book cover

DNA Profiling and DNA Fingerprinting pp 17–38Cite as

Birkhäuser

Plant DNA Fingerprinting and Profiling

  • Chapter

Part of the book series: Methods and Tools in Biosciences and Medicine ((MTBM))

Abstract

DNA fingerprinting has been successfully applied to plants to develop genetic profiles. It has become an important tool in diverse fields of plant population research, e.g. the study of breeding systems (sexual versus asexual reproduction in clonal plant species, estimating of selfing rates, paternity and maternity analysis), genetic relatedness between or within species and populations, assessment of gene flow and gene identification.

This is a preview of subscription content, log in via an institution.

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. McCauley DE (1995) The use of chloroplast DNA polymorphism in studies of gene flow in plants. Trends Ecol Evol 10: 198–202

    Article  PubMed  CAS  Google Scholar 

  2. Schaal BA, Hayworth DA, Olsen KM, Rauscher JT, Smith WA (1998) Phylogeo-graphic studies in plants: problems and prospects. Mol Ecol 7: 465–474

    Article  Google Scholar 

  3. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Homes M, Frijters A, Pot J, Peleman J, Kuiper M et al (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23: 4407–4414

    Article  PubMed  CAS  Google Scholar 

  4. Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol Biol 17: 1105–1109

    Article  PubMed  CAS  Google Scholar 

  5. Demesure B, Sodzi N, Petit RJ (1995) A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Mol Ecol 4: 129–131

    Article  PubMed  CAS  Google Scholar 

  6. Dellaporta SL, Wood VP, Hicks JB (1983) A plant DNA mini-preparation: version II. Plant Mol Biol Rep 1:19–21

    Article  CAS  Google Scholar 

  7. Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Eocus 12: 13–15

    Google Scholar 

  8. John ME (1992) An efficient method for isolation of RNA and DNA from plants containing polyphenolics. Nucleic Acids Res 20:2381

    Article  PubMed  CAS  Google Scholar 

  9. Kim CS, Lee CHS, Shin JS, Chung YS, Hyung NI (1997) A simple and rapid method for isolation of high quality genomic DNA from fruit trees and conifers using PVP. Nucleic Acids Res 25: 1085–1086

    Article  PubMed  CAS  Google Scholar 

  10. Furukawa K, Bhavadna VP (1983) Influence of amniotic polysaccharides on DNA synthesis in isolated nuclei and by DNA polymerase: correlation of observed effects with properties of the polysaccharides. Biochim Biophys Acta 740: 466–475

    Article  PubMed  CAS  Google Scholar 

  11. Fang G, Hammar S, Grumet R (1992) A quick inexpensive method for removing polysaccharides from plant genomic DNA. Biotechniques 13: 52–55

    PubMed  CAS  Google Scholar 

  12. Rogers HJ, Burns NA, Parkes HC (1996) Comparison of small-scale methods for the rapid extraction of plant DNA suitable for PCR analysis. Plant Mol Biol Rep 14:170–183

    Article  CAS  Google Scholar 

  13. Edwards KC, Jonstone C, Thompson C (1991) A simple and rapid method for the preparation of genomic DNA for PCR analysis. Nucleic Acids Res 19:1349

    Article  PubMed  CAS  Google Scholar 

  14. Stommel JR, Panta GR, Levi A, Rowland LJ (1997) Effect of gelatin and BSA on the amplification reaction for generating RAPDs. Biotechniques 22:1064–1066

    PubMed  CAS  Google Scholar 

  15. Dumoulin-Lapegue S, Pemonge M-H, Petit RJ (1997) An enlarged set of consensus primers for the study of organelle DNA in plants. Mol Ecol 6: 393–397

    Article  Google Scholar 

  16. Downie SR, Palmer JD (1992) Use of chloroplast DNA rearrangements in reconstructing plant phylogenies. In: PS Soltis, DE Soltis, JJ Doyle (eds): Molecular systematics of plants. Chapman and Hall, New York, 14–35

    Chapter  Google Scholar 

  17. Gielly L, Taberlet P (1994) The use of chloroplast DNA to resolve plant phylogenies: non-coding versus rbcL sequences. Mol Biol Evol 11: 769–777

    PubMed  CAS  Google Scholar 

  18. Forcioli D, Saumitou-Laprade P, Michaelis G, Cuguen J (1994) Chloroplast DNA polymorphism revealed by a fast, nonradioactive method in Beta vulgaris ssp. maritima. Mol Ecol 3:173–176

    Article  CAS  Google Scholar 

  19. Petit RJ, Pineau E, Demesure B, Bacilieri R, Ducousso A, Kremer A (1997) Chloroplast DNA footprints of postglacial recolonization by oaks. Proc Natl Acad Sci USA 94: 9996–10001

    Article  PubMed  CAS  Google Scholar 

  20. El Mousadik A, Petit RJ (1996) Chloroplast DNA phylogeography of the argan tree of Morocco. Mol Ecol 5: 547–555

    Article  CAS  Google Scholar 

  21. Powell W, Morgante M, McDevitt R, Vendramin GG, Rafalski JA (1995) Polymorphic simple sequence repeat regions in chloroplast genomes: applications to the population genetics of pines. Proc Natl Acad Sci USA 92: 7759–7763

    Article  PubMed  CAS  Google Scholar 

  22. Weising K, Kaemmer D, Weigand F, Epplen JT, Kahl G (1992) Oligonucleotide fingerprinting reveals various probe-dependent levels of informativeness in chickpea (Cicer arietinum). Genome 35: 436–442

    Article  CAS  Google Scholar 

  23. Vosman B, Arens P (1997) Molecular characterization of GATA/GACA microsatellite repeats in tomato. Genome 40: 25–33

    Article  PubMed  CAS  Google Scholar 

  24. Rus-Kortekaas W, Smulders MJM, Arens P, Vosman B (1994) Direct comparison of levels of genetic variation in tomato detected by a GACA-containing microsatellite probe and by random amplified polymorphic DNA. Genome 37: 375–381

    Article  PubMed  CAS  Google Scholar 

  25. Nybom H, Hall HK (1991) Minisatellite DNA “fingerprinting” can distinguish Rubus cultivars and estimate their degree of relatedness. Euphytica 53:107–114

    Article  CAS  Google Scholar 

  26. Jung C, Pillen K, Frese L, Fähr S, Melchinger AE (1993) Phylogenetic relationships between cultivated and wild species of the genus Beta revealed by DNA fingerprinting. Theor Appl Genet 86: 449–457

    Article  CAS  Google Scholar 

  27. Weising K, Ramser D, Kaemmer D, Kahl G (1994) Multilocus DNA fingerprinting and genetic relatedness in plants: a case study with banana and tomato. In: B Schierwater, B Streit, GP Wagner, R De-Salle (eds): Molecular ecology and evolution: approaches and applications. Birkhäuser Verlag, Basel, 45–59

    Google Scholar 

  28. Van Heusden AW, Van de Voort JR, Bachmann K (1991) Oligo-(GATA) fingerprints identify clones in asexual dandelion Taraxacum (Asteraceae). Fingerprint News 3: 13–15

    Google Scholar 

  29. Piquot Y, Saumitou-Laprade P, Petit D, Vernet P, Epplen JT (1996) Genotypic diversity revealed by allozymes and oligonucleotide DNA fingerprinting in French populations of the macrophyte Sparganium erectum. Mol Ecol 5: 251–258

    PubMed  CAS  Google Scholar 

  30. Vrieling K, Saumitou-Laprade P, Meelis E, Epplen JT (1997) Multilocus DNA fingerprints in the plant Cynoglossum officinale L. and their use in the estimation of seifing. Mol Ecol 6: 587–594

    Article  CAS  Google Scholar 

  31. Pena SDJ, Chakraborty R (1994) Paternity testing in the DNA era. Trends Genet 10: 204–209

    Article  PubMed  CAS  Google Scholar 

  32. Russel JR, Fuller JD, Macaulay M, Harz BG, Jahoor A, Powell W, Waugh R (1997) Direct comparison of levels of genetic variation among barley accessions detected by RFLPs, AFLPs, SSRs and RAPDs. Theor Appl Genet 95: 714–722

    Article  Google Scholar 

  33. Schondelmaier J, Steinrücken G, Jung C (1996) Integration of AFLP markers into a linkage map of sugar beet (Beta vulgaris L.). Plant Breeding 115: 231–237

    Article  CAS  Google Scholar 

  34. Meksem K, Leister D, Peleman J, Zabeau M, Salamini F, Gebhardt C (1995) A high resolution map of the vicinity of the R1 locus on chromosome V of potato based on RFLP and AFLP markers. Mol Gen Genet 249: 74–81

    Article  PubMed  CAS  Google Scholar 

  35. Qi X, Lindhout P (1997) Development of AFLP markers in Barley. Mol Gen Genet 254:330–336

    Article  PubMed  CAS  Google Scholar 

  36. Travis SE, Maschinski J, Keim P (1996) An analysis of genetic variation in Astragalus cremnophylax var. cremnophylax, a critical endengered plant, using AFLP markers. Mol Ecol 5: 735–745

    Article  PubMed  CAS  Google Scholar 

  37. Couch JA, Fritz PJ (1990) Isolation of DNA from plants high in polyphenolics. Plant Mol Biol Rep 8: 8–12

    Article  CAS  Google Scholar 

  38. Maguire TL, Collins GG, Sedgley M (1994) A modified CTAB DNA extraction procedure for plants belonging to the family of proteaceae. Plant Mol Biol Rep 12:106–109

    Article  CAS  Google Scholar 

  39. Rether B, Delmas G, Laouedj A (1993) Isolation of polysaccharide-free DNA from plants. Plant Mol Biol Rep 11: 333–337

    Article  CAS  Google Scholar 

  40. Do N, Adams RP (1991) A simple technique for removing plant polysaccharide contaminants from DNA. Biotechniques 10: 162–166

    PubMed  CAS  Google Scholar 

  41. Kolodner R, Tewari KK (1975) The molecular size and conformation of the chloroplast DNA from higher plants. Biochim Biophys Acta 402: 372–390

    Article  PubMed  CAS  Google Scholar 

Download references

Authors
  1. Pierre Saumitou-Laprade
    View author publications

    You can also search for this author in PubMed Google Scholar

  2. Yves Piquot
    View author publications

    You can also search for this author in PubMed Google Scholar

  3. Olivier Raspé
    View author publications

    You can also search for this author in PubMed Google Scholar

  4. Jacqueline Bernard
    View author publications

    You can also search for this author in PubMed Google Scholar

  5. Klaas Vrieling
    View author publications

    You can also search for this author in PubMed Google Scholar

Editor information

Editors and Affiliations

  1. Molekulare Humangenetik, Ruhr-Universität Bochum, 44780, Bochum, Germany

    Jörg T. Epplen

  2. Institut für Evolutionsbiologie und Ökologie, An der Immenburg 1, 53121, Bonn, Germany

    Thomas Lubjuhn

Rights and permissions

Reprints and permissions

Copyright information

© 1999 Birkhäuser Verlag

About this chapter

Cite this chapter

Saumitou-Laprade, P., Piquot, Y., Raspé, O., Bernard, J., Vrieling, K. (1999). Plant DNA Fingerprinting and Profiling. In: Epplen, J.T., Lubjuhn, T. (eds) DNA Profiling and DNA Fingerprinting. Methods and Tools in Biosciences and Medicine. Birkhäuser, Basel. https://doi.org/10.1007/978-3-0348-7582-0_2

Download citation

  • DOI: https://doi.org/10.1007/978-3-0348-7582-0_2

  • Publisher Name: Birkhäuser, Basel

  • Print ISBN: 978-3-7643-6018-4

  • Online ISBN: 978-3-0348-7582-0

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics

Search

Navigation