Summary
Systematists and population geneticists can both use molecular data sets to construct evolutionary trees (species and gene trees, respectively), and then use the resulting historical framework to test a variety of hypotheses. The greatest prospect for future advances in our understanding of speciation is to extend these historical approaches to the species/population interface, for only by straddling this interface can we actually study the processes involved in the origin of a new species. This chapter illustrates how the bottom-up historical approaches used in population genetics can be extended upwards to this critical interface in order to separate the effects of population structure from population history, to rigorously test the species status of a group, and to test hypotheses about the process of speciation by using gene trees to define a nested, statistical analysis of biogeographic and other types of data.
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References
Antonarakis, S.E., Boehm, C.D., Serjeant, G.R., Theisen, C.E., Dover, G.J. and Kazazian H.K., Jr. (1984) Origin of the β-globin gene in Blacks: The contribution of recurrent mutation or gene conversion or both. Proc. Natl. Acad. Sci. USA 81: 853–856.
Avise, J.C., Ball, R.M. and Arnold, J. (1988) Current versus historical population sizes in vertebrate species with high gene flow: a comparison based on mitochondrial DNA lineages and inbreeding theory for neutral mutations. Mol. Biol. Evol. 5: 331–344.
Avise, J.C (1989) Gene trees and organismal histories: a phylogenetic approach to population biology. Evolution 43: 1192–1208.
Barton, N.H. and Charlesworth, B. (1984) Genetic revolutions, founder effects, and speciation. Ann. Rev. Ecol. Syst. 15: 133–164.
Baum, D.A. and Larson, A. (1991) Adaptation reviewed: a phylogenetic methodology for studying character macroevolution. Syst. Zool. 40: 1–18.
Bush, G.L. (1975) Modes of speciation. Ann. Rev. Ecol. Syst. 6: 339–364.
Carson, H.L. and Templeton, A.R. (1984) Genetic revolutions in relation to speciation phenomena: the founding of new populations. Ann. Rev. Ecol. Syst. 15: 97–131.
Castelloe, J. and Templeton, A.R. (1994) Root probabilities for intraspecific gene trees under neutral coalescent theory. Mol. Phyl. Evol. 3; in press.
Cracraft, J. (1989) Species as entities of biological theory. In: M. Ruse (ed.): What the Philosophy of Biology Is. Kluwer Academic Publishers, Dordrecht, Netherlands, pp. 31–52.
Crandall, K.A. (1993) A phylogenetic analysis of speciation in the crayfish subgenus Procericambarus (Decapoda: Cambaridae). Ph.D. Thesis. Washington University, St. Louis, Missouri.
DeSalle, R. and Templeton, A.R. (1988) Founder effects and the rate of mitochondrial DNA evolution in Hawaiian Drosophila. Evolution 42: 1076–1084.
Ewens, W.J. (1990) Population genetics theory — the past and the future. In: S. Lessard (ed.). Mathematical and Statistical Developments of Evolutionary Theory. Kluwer Academic Publishers, Dordrecht, Netherlands, pp. 177–227.
Farrell, B. and Mitter, C. (1990) Phylogenesis of insect/plant interactions: have Phyllobrotica leaf beetles (Chrysomelidae) and the Lamiales diversified in parallel. Evolution 44: 1389–1403.
Golding, G.B. (1987) The detection of deleterious selection using ancestors inferred from a phylogenetic history. Genet. Res. 49: 71–82.
Golding, B. and Felsenstein, J. (1990) A maximum likelihood approach to the detection of selection from a phylogeny. J. Mol. Evol. 31: 511–523.
Gould, S.J. (1977) Ontogeny and Phylogeny. Belknap Press, Cambridge, Massachusetts.
Harris, R.N., Semlitsch, R.D., Wilbur, H.M. and Fauth, J.E. (1990) Local variation in the genetic basis of pedomorphosis in the salamander Ambystoma talpoideum. Evolution 44: 1588–1603.
Harrison, R.G. (1991) Molecular changes at speciation. Annu. Rev. Ecol. Syst. 22: 281–308.
Hartl, D.L. and Sawyer, S.A. (1991) Inference of selection and recombination from nucleotide sequence data. J. Evol. Biol. 4: 519–532.
Harvey, P.H. and Pagel, M.D. (1991) The Comparative Method in Evolutionary Biology. Oxford University Press, Oxford.
Hillis, D.M. (1985) Evolutionary genetics of the Andean lizard genus Pholidobolus (Sauria: Gymnophthalmidae) : phylogeny, biogeography, and a comparison of tree construction techniques. Syst. Zool. 34: 109–126.
Hubby, J.L. and Throckmorton, L.H. (1965) Protein differences in Drosophila. II. Comparative species genetics and evolutionary problems. Genetics 52: 203–215.
Hudson, R.R. (1990) Gene genealogies and the coalescent process. Oxford Surveys Evol. Biol. 7: 1–44.
Hudson, R.R., Slatkin, M. and Maddison, W.P. (1992) Estimation of levels of gene flow from DNA-sequence data. Genetics 132: 583–589.
Johnson, F.M., Kanapi, C.G., Richardson, R.H., Wheeler, M.R. and Stone, W.S. (1966) An operational classification of Drosophila esterases for species comparisons. In: M.R. Wheeler (ed.): Studies in Genetics. III. Morgan Centennial Issue. University of Texas, Austin, pp. 517–532.
Kingman, J.F.C. (1982a) The coalescent. Stochast. Proc. Appl. 13: 235–248.
Kingman, J.F.C. (1982b) On the genealogy of large populations. J. Appl. Prob. 19A: 27–43.
Larson, A. (1984) Neontological inferences of evolutionary pattern and process in the salamander family Plethodontidae. Evol. Biol. 17: 119–217.
Lynch, J.D. (1989) The gauge of speciation: on the frequencies of modes of speciation. In: D. Otte and J.A. Endler (eds): Speciation and Its Consequences. Sinauer Associates Inc., Sunderland, Massachusetts, pp. 527–553.
Matos, J. (1992) Evolution within the Pinus montezumae Complex of Mexico: Population Subdivison, Hybridization, and Taxonomy. Ph.D. Thesis. Washington University, St. Louis, Missouri.
Mayr, E. (1954) Change of genetic environment and evolution. In: J. Huxley, A.C. Hardy and E.B. Ford (eds): Evolution as a Process. Princeton, N.J., Princeton University Press, pp. 157–180.
Mayr, E. (1982) Processes of speciation in animals. In: C. Barigozzi (ed.): Mechanisms of Speciation. New York, Alan R. Liss., pp. 1–19.
Mayr, E. (1992) A local flora and the biological species concept. Amer. J. Botany 79: 222–238.
Mitter, C., Farrell, B. and Wiegmann, B. (1988) The phylogenetic study of adaptive zones: has phytophagy promoted insect diversification? Amer. Natur. 132: 107–128.
Mitter, C., Farrell, B. and Futuyma, D.J. (1991) Phylogenetic studies of insect-plant interactions: insights into the genesis of diversity. Trends Ecol. Evol. 6: 290–293.
O’Brien, S.J. (1991) Ghetto legacy. Curr. Biol. 1: 209–211.
Otte, D. (1989) Speciation in Hawaiian crickets. In: D. Otte and J.A. Endler (eds): Speciation and Its Consequences. Sinauer Associates Inc., Sunderland, Massachusetts, pp. 482–526.
Page, R. D. M. (1990) Temporal congruence and cladistic analysis of biogeography and cospeciation. Syst. Zool. 39: 205–226.
Paterson, H. (1985) The recognition concept of species. In: E. Verba (ed.): Species and Speciation. Transvaal Museum, Pretoria, South Africa, pp. 21–29.
Routman, E. (1993) Population structure and genetic diversity of metamorphic and paedomorphic populations of the tiger salamander, Ambystoma tigrinum. J. Evol. Biol. 6: 329–357.
Semlitsch, R.D. and Wilbur, H.M. (1989) Artificial selection for paedomorphosis in the salamander Amybstoma talpoideum. Evolution 43: 105–112.
Shaw, K.L. (1993) The evolution of song groups in the Hawaiian cricket genus Laupala. Ph.D. Thesis. Washington University, St. Louis, Missouri.
Slatkin, M. (1989) Detecting small amounts of gene flow from phylogenies of alleles. Genetics 121: 609–612.
Slatkin, M. and Maddison, W.P. (1989) A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics 123: 603–613.
Slatkin, M. and Maddison, W.P. (1990) Detecting isolation by distance using phylogenies of genes. Genetics 126: 249–260.
Sokal, R.R. and Crovello, J.T. (1970) The biological species concept: a critical evalution. Amer. Natur. 104: 127–153.
Templeton, A.R. (1980) The theory of speciation via the founder principle. Genetics 94: 1011–1038.
Templeton, A.R. (1981) Mechanisms of speciation — a population genetic approach. Ann. Rev. Ecol. Syst. 12: 23–48.
Templeton, A.R. (1983) Natural and experimental parthenogenesis. In: M. Ashburner, H.L. Carson and J.N. Thompson (eds): The Genetics and Biology Drosophila. Academic Press, London, pp. 343–398.
Templeton, A.R., Boerwinkle, E. and Sing, C.F. (1987) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of Alcohol Dehydrogenase activity in Drosophila. Genetics 117: 343–351.
Templeton, A.R., Sing, C.F., Kessling, A. and Humphries, S. (1988) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. II. The analysis of natural populations. Genetics 120: 1145–1154.
Templeton, A.R. (1989) The meaning of species and speciation: A genetic perspective. In: D. Otte and J.A. Endler (eds): Speciation and its Consequences. Sinauer Associates Inc., Sunderland, Massachusetts, pp. 3–27.
Templeton, A.R., Crandall, K.A. and Sing, C.F. (1992) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132: 619–633.
Templeton, A.R. (1993) The “Eve” hypothesis: a genetic critique and reanalysis. Amer. Anthropol. 95: 51–72.
Templeton, A.R. and Sing, C.F. (1993) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics 134: 659–669.
Templeton, A.R., Routman, E. and Philips, C. (1993) Separating population structure from population history with haplotype trees: an example with ambystomid salamanders. Washington University.
Whittemore, A.T. (1993) Species concepts: a reply to Ernst Mayr. Taxon 42: 573–583.
Wiley, E.O. (1981) Phylogenetics: The Theory and Practice of Phylogenetic Systematics. Addison Wiley, New York.
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Templeton, A.R. (1994). The role of molecular genetics in speciation studies. In: Schierwater, B., Streit, B., Wagner, G.P., DeSalle, R. (eds) Molecular Ecology and Evolution: Approaches and Applications. Experientia Supplementum, vol 69. Birkhäuser, Basel. https://doi.org/10.1007/978-3-0348-7527-1_26
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