Skip to main content

Effect of Hydration and Metal Ions on DNA Conformations Studied by Vibrational Spectroscopy

  • Chapter

Part of the book series: Advances in Life Sciences ((ALS))

Abstract

Water molecules and metal ions play a fundamental role in the stabilization of nucleic acid structures. It has been extensively studied both theoretically (for review see Pullman et al. 1983) and experimentally by X-ray diffraction (for review see Rich et a). 1984, Dickerson 1987 ) and NMP. We would like here to give a few examples of how vibrational spectroscopy can be used to investigate the effect of water and ionic environment on DNA conformation. Local changes of DNA geometry may play a fundamental role in regulation of gene expression for example by modulating DNA-protein interactions, therefore the importance of the studies concerning the conformational variability of the DNA double helix. One of the advantages of vibrational spectroscopy is to allow one to obtain informations about nucleic acid helical geometries under a wide variety of physical states: solutions, gels, fibers, hydrated films, crystals. It is therefore possible to study the effect of hydration on the geometry of a DNA sequence and investigate the existence of possible conformational transitions. Vibratioal spectroscopy is thus able to establish a relationship between the results obtained in solid state by X-ray crystal diffraction and the structures determined in solution by NMR studies.

This is a preview of subscription content, log in via an institution.

Buying options

Chapter
USD   29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  • Adam, S., Bourtayre, P., Liquier, J. and Taillandier, E. (1986a) Nucleic Acids Res. 14, 3501–3513.

    Article  Google Scholar 

  • Adam, S., Liquier, J., Taboury, J.A. and Taillandier, E. (1986b) Biochemistry 25, 3220–3225.

    Article  Google Scholar 

  • Adam, S., Petìcolas, W., Huynh-Dinh, T., Igolen, J. and Taillandier, E. (1989) Spectrochim. Acta in the press.

    Google Scholar 

  • Bourtayre, P., Liquier, J., Pizzorni, L. and Taillandier, E. (1987) J. Biomol. Struct. Dyn. 5, 97–104.

    Google Scholar 

  • Dickerson, R.E. in Unusual DNA Structures (R.D. Wells and S.C. Harvey Eds.) Springer Verlag.

    Google Scholar 

  • Doucet, J., Benoit, J.P., Cruise, W.B.T., Prange, T. and Kennard, O. (1989) Nature 337, 190–193.

    Article  Google Scholar 

  • Pilet, J. and Brahms J. (1973) Biopolymers 12, 387–403.

    Article  Google Scholar 

  • Pullman, B., Pullman, A. and Lavery, R. in Structure Dynamics Interactions and Evolution of Biological Macromolecules (C. Helene Ed.) Reidel Pub. pp 23–44.

    Google Scholar 

  • Rich, A., Nordheim, A. and Wang, A.H-J (1984) Ann. Rev. Biochem. 53, 791–846.

    Article  Google Scholar 

  • Ridoux, J.P., Liquier, J. and Taillandier, E. (1988) Biochemistry 27, 3874–3878.

    Article  Google Scholar 

  • Shakked, Z., Pabinovitrh, D., Kennard, O., Cruise, W.B.T., Salisbury, S.A. and Viswamitra, M.A. (1983) J. Mol. Biol. 166, 183–201.

    Article  Google Scholar 

  • Taboury, J.A., Liquier, J. and Taillandier, E. (1985) Can. J. Chem. 63, 1904–1909.

    Article  Google Scholar 

  • Taillandier, E., Taboury, J.A., Liquier, J., Sautiere, P. and Couppez, M. (1981) Biochimie 63, 895–898.

    Article  Google Scholar 

  • Taillandier, E., Taboury, J.A., Adam, S. and Liquier, J. (1984) Biochemistry 23, 5703–5706.

    Article  Google Scholar 

  • Taillandier, E., Liquier, J. and Taboury,J.A. (1985) in Advances in Infrared and Raman Spectrosopy (R.J.H. Clark and R.E. Hester Eds.) Wiley, vol 12,pp 65–114.

    Google Scholar 

  • Urpi, L., Ridoux, J.P., Liquier, J., Verdaguer, N., Fita, I., Subirana, J.A., Iglesias, F., Huynh-Dinh, T., Igolen, J. and Taillandier. E. (1989) Nucleic Acids Res. 17, 6669–6680.

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1990 Birkhäuser Verlag Basel

About this chapter

Cite this chapter

Taillandier, E., Liquier, J. (1990). Effect of Hydration and Metal Ions on DNA Conformations Studied by Vibrational Spectroscopy. In: Vasilescu, D., Jaz, J., Packer, L., Pullman, B. (eds) Water and Ions in Biomolecular Systems. Advances in Life Sciences. Birkhäuser Basel. https://doi.org/10.1007/978-3-0348-7253-9_7

Download citation

  • DOI: https://doi.org/10.1007/978-3-0348-7253-9_7

  • Publisher Name: Birkhäuser Basel

  • Print ISBN: 978-3-0348-7255-3

  • Online ISBN: 978-3-0348-7253-9

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics