Skip to main content

Self-supervised Learning for MRI Reconstruction with a Parallel Network Training Framework

  • Conference paper
  • First Online:
Medical Image Computing and Computer Assisted Intervention – MICCAI 2021 (MICCAI 2021)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 12906))

Abstract

Image reconstruction from undersampled k-space data plays an important role in accelerating the acquisition of MR data, and a lot of deep learning-based methods have been exploited recently. Despite the achieved inspiring results, the optimization of these methods commonly relies on the fully-sampled reference data, which are time-consuming and difficult to collect. To address this issue, we propose a novel self-supervised learning method. Specifically, during model optimization, two subsets are constructed by randomly selecting part of k-space data from the undersampled data and then fed into two parallel reconstruction networks to perform information recovery. Two reconstruction losses are defined on all the scanned data points to enhance the network’s capability of recovering the frequency information. Meanwhile, to constrain the learned unscanned data points of the network, a difference loss is designed to enforce consistency between the two parallel networks. In this way, the reconstruction model can be properly trained with only the undersampled data. During the model evaluation, the undersampled data are treated as the inputs and either of the two trained networks is expected to reconstruct the high-quality results. The proposed method is flexible and can be employed in any existing deep learning-based method. The effectiveness of the method is evaluated on an open brain MRI dataset. Experimental results demonstrate that the proposed self-supervised method can achieve competitive reconstruction performance compared to the corresponding supervised learning method at high acceleration rates (4 and 8). The code is publicly available at https://github.com/chenhu96/Self-Supervised-MRI-Reconstruction.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

Notes

  1. 1.

    http://brain-development.org/ixi-dataset/.

References

  1. Aggarwal, H.K., Mani, M.P., Jacob, M.: MoDL: model-based deep learning architecture for inverse problems. IEEE Trans. Med. Imag. 38(2), 394–405 (2019). https://doi.org/10.1109/TMI.2018.2865356

    Article  Google Scholar 

  2. Eo, T., Jun, Y., Kim, T., Jang, J., Lee, H.J., Hwang, D.: KIKI-net: cross-domain convolutional neural networks for reconstructing undersampled magnetic resonance images. Magn. Resonan. Med. 80(5), 2188–2201 (2018). https://doi.org/10.1002/mrm.27201

    Article  Google Scholar 

  3. Glorot, X., Bengio, Y.: Understanding the difficulty of training deep feedforward neural networks. In: Teh, Y.W., Titterington, M. (eds.) Proceedings of the Thirteenth International Conference on Artificial Intelligence and Statistics. Proceedings of Machine Learning Research, vol. 9, pp. 249–256. PMLR, Chia Laguna Resort, Sardinia, Italy, 13–15 May 2010. http://proceedings.mlr.press/v9/glorot10a.html

  4. Hammernik, K., Klatzer, T., Kobler, E., Recht, M.P., Sodickson, D.K., Pock, T., Knoll, F.: Learning a variational network for reconstruction of accelerated MRI data. Magn. Resonan. Med. 79(6), 3055–3071 (2018). https://doi.org/10.1002/mrm.26977

    Article  Google Scholar 

  5. Kingma, D.P., Ba, J.: Adam: A Method for Stochastic Optimization (2017). https://arxiv.org/abs/1412.6980

  6. Mardani, M., et al.: Deep generative adversarial neural networks for compressive sensing MRI. IEEE Trans. Med. Imag. 38(1), 167–179 (2019). https://doi.org/10.1109/TMI.2018.2858752

    Article  Google Scholar 

  7. Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) Medical Image Computing and Computer-Assisted Intervention ( MICCAI 2015). pp. 234–241. Springer International Publishing, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28

  8. Wang, S., Cheng, H., Ying, L., Xiao, T., Ke, Z., Zheng, H., Liang, D.: Deep complex MRI: exploiting deep residual network for fast parallel MR imaging with complex convolution. Magn. Resonan. Imag. 68, 136–147 (2020). https://doi.org/10.1016/j.mri.2020.02.002

    Article  Google Scholar 

  9. Wang, S., et al.: Accelerating magnetic resonance imaging via deep learning. In: 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI), pp. 514–517 (2016). https://doi.org/10.1109/ISBI.2016.7493320

  10. Wang, S., Tan, S., Gao, Y., Liu, Q., Ying, L., Xiao, T., Liu, Y., Liu, X., Zheng, H., Liang, D.: Learning joint-sparse codes for calibration-free parallel MR imaging. IEEE Trans. Med. Imag. 37(1), 251–261 (2018). https://doi.org/10.1109/TMI.2017.2746086

    Article  Google Scholar 

  11. Wang, S., Xiao, T., Liu, Q., Zheng, H.: Deep learning for fast MR imaging: a review for learning reconstruction from incomplete k-space data. Biomed. Sig. Proces. Control 68, 102579 (2021). https://doi.org/10.1016/j.bspc.2021.102579

  12. Yaman, B., Hosseini, S.A.H., Moeller, S., Ellermann, J., Uğurbil, K., Akçakaya, M.: Self-supervised learning of physics-guided reconstruction neural networks without fully sampled reference data. Magn. Resonan. Med. 84(6), 3172–3191 (2020). https://doi.org/10.1002/mrm.28378

    Article  Google Scholar 

  13. Yang, Y., Sun, J., Li, H., Xu, Z.: Deep ADMM-Net for compressive sensing MRI. In: Proceedings of the 30th International Conference on Neural Information Processing Systems (NIPS 2016), pp. 10–18. Curran Associates Inc., Red Hook (2016)

    Google Scholar 

  14. Zhang, J., Ghanem, B.: ISTA-Net: interpretable optimization-inspired deep network for image compressive sensing. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (CVPR), June 2018

    Google Scholar 

Download references

Acknowledgments

This research was partly supported by the National Natural Science Foundation of China (61871371, 81830056), Key-Area Research and Development Program of GuangDong Province (2018B010109009), Scientific and Technical Innovation 2030-“New Generation Artificial Intelligence" Project (2020AAA0104100, 2020AAA0104105), Key Laboratory for Magnetic Resonance and Multimodality Imaging of Guangdong Province (2020B1212060051), the Basic Research Program of Shenzhen (JCYJ20180507182400762), Youth Innovation Promotion Association Program of Chinese Academy of Sciences (2019351).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Shanshan Wang .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Hu, C., Li, C., Wang, H., Liu, Q., Zheng, H., Wang, S. (2021). Self-supervised Learning for MRI Reconstruction with a Parallel Network Training Framework. In: de Bruijne, M., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2021. MICCAI 2021. Lecture Notes in Computer Science(), vol 12906. Springer, Cham. https://doi.org/10.1007/978-3-030-87231-1_37

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-87231-1_37

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-87230-4

  • Online ISBN: 978-3-030-87231-1

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics