Skip to main content

The Generation of Virtual Immunohistochemical Staining Images Based on an Improved Cycle-GAN

  • Conference paper
  • First Online:
Machine Learning and Intelligent Communications (MLICOM 2020)

Abstract

Pathological examination is the gold standard for the diagnosis of cancer. In general, common pathological examinations include hematoxylin-eosin (H&E) staining and immunohistochemistry. H&E staining examination has the advantages of short dyeing duration and low cost, which is the most common one in the clinical practice. However, in some cases, the pathologist is hard to conduct an accurate diagnosis of cancer only according to the H&E staining images. Whereas, the immunohistochemistry examination can further provide enough evidence for the diagnosis process. Hence, the generation of virtual Ki-67 staining sections from H&E staining sections by computer assisted technology will be a good creative solution. Currently, this is still a challenge due to the lack of pixel-level paired data. In this paper, we propose a new method based on Cycle-GAN to generate Ki-67 staining images from the available H&E images, and our method is validated on a neuroendocrine tumor dataset. Massive experiment results show that the addition of skip connection and structural consistency constraint can further improve the performance of Cycle-GAN in unpaired pathological image-to-image transfer tasks. The quantification evaluation demonstrates that our proposed method achieves the state of art and reveals significant potential in clinical virtual staining.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Weinstein, R.S., et al.: Overview of telepathology, virtual microscopy, and whole slide imaging: prospects for the future. Human Pathol. 40(8), 1057–1069 (2009)

    Article  Google Scholar 

  2. Soares, C.T., Frederigue-Junior, U., de Luca, L.A.: Anatomopathological analysis of sentinel and nonsentinel lymph nodes in breast cancer: hematoxylin-eosin versus immunohistochemistry. Int. J. Surg. Pathol. 15(4), 358–368 (2007)

    Article  Google Scholar 

  3. Sheikh, R.A., et al.: Correlation of Ki-67, p53, and Adnab-9 immunohistochemical staining and ploidy with clinical and histopathologic features of severely dysplastic colorectal adenomas. Dig. Dis. Sci. 48(1), 223–229 (2003). https://doi.org/10.1023/A:1021727608133

    Article  Google Scholar 

  4. Wang, Y., Sun, L.L., Jin, Q.: Enhanced diagnosis of pneumothorax with an improved real-time augmentation for imbalanced chest x-rays data based on DCNN. In: IEEE/ACM Transactions on Computational Biology and Bioinformatics (2019)

    Google Scholar 

  5. Tang, Z., et al.: An augmentation strategy for medical image processing based on statistical shape model and 3D thin plate spline for deep learning. IEEE Access 7, 133111–133121 (2019)

    Article  Google Scholar 

  6. Yang, J., et al.: Joint correction of attenuation and scatter in image space using deep convolutional neural networks for dedicated brain 18F-FDG PET. Phys. Med. Biol. 64(7), 075019 (2019)

    Article  Google Scholar 

  7. Tang, Z., Wang, M., Song, Z.: Rotationally resliced 3D prostate segmentation of MR images using Bhattacharyya similarity and active band theory. Physica Med. 54, 56–65 (2018)

    Article  Google Scholar 

  8. Zhang, B., et al.: Cerebrovascular segmentation from TOF-MRA using model-and data-driven method via sparse labels. Neurocomputing 380, 162–179 (2020)

    Article  Google Scholar 

  9. Goodfellow, I., et al.: Generative adversarial nets. Adv. Neural. Inf. Process. Syst. 27, 2672–2680 (2014)

    Google Scholar 

  10. Mirza, M., Osindero, S.: Conditional generative adversarial nets. arXiv preprint arXiv:1411.1784 (2014)

  11. Isola, P., et al.: Image-to-image translation with conditional adversarial networks. In: Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition (2017)

    Google Scholar 

  12. Zhu, J.-Y., et al.: Unpaired image-to-image translation using cycle-consistent adversarial networks. In: Proceedings of the IEEE International Conference on Computer Vision. (2017)

    Google Scholar 

  13. Wang, Z., et al.: Image quality assessment: from error visibility to structural similarity. IEEE Trans. Image Process. 13(4), 600–612 (2004)

    Article  Google Scholar 

  14. Liu, L., et al.: Understanding the Difficulty of Training Transformers. arXiv preprint arXiv:2004.08249 (2020)

  15. Kingma, D.P., Ba, J.: Adam: A method for stochastic optimization. arXiv preprint arXiv:1412.6980 (2014)

  16. Wang, Z., Simoncelli, E.P., Bovik, A.C.: Multiscale structural similarity for image quality assessment. In: The Thirty-Seventh Asilomar Conference on Signals, Systems and Computers, vol. 2. IEEE (2003)

    Google Scholar 

  17. Weng, L., Preneel, B.: A secure perceptual hash algorithm for image content authentication. In: De Decker, B., Lapon, J., Naessens, V., Uhl, A. (eds.) CMS 2011. LNCS, vol. 7025, pp. 108–121. Springer, Heidelberg (2011). https://doi.org/10.1007/978-3-642-24712-5_9

    Chapter  Google Scholar 

Download references

Acknowledgment

This research was made possible with the financial support from National Science Foundation of China (NSFC) (61875102, 81871395, 61675113), Science and Technology Research Program of Shenzhen City (JCYJ20170816161836562, JCYJ20170817111912585, JCYJ20160427183803458, JCYJ20170412171856582, JCY20180508152528735), Oversea cooperation foundation, Graduate School at Shenzhen, Tsinghua University (HW2018007).

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Tian Guan or Yonghong He .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 ICST Institute for Computer Sciences, Social Informatics and Telecommunications Engineering

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Liu, S. et al. (2021). The Generation of Virtual Immunohistochemical Staining Images Based on an Improved Cycle-GAN. In: Guan, M., Na, Z. (eds) Machine Learning and Intelligent Communications. MLICOM 2020. Lecture Notes of the Institute for Computer Sciences, Social Informatics and Telecommunications Engineering, vol 342. Springer, Cham. https://doi.org/10.1007/978-3-030-66785-6_16

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-66785-6_16

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-66784-9

  • Online ISBN: 978-3-030-66785-6

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics