Skip to main content

Comparative Analysis of Magnetic Resonance Fingerprinting Dictionaries via Dimensionality Reduction

  • Conference paper
  • First Online:
Graph Learning in Medical Imaging (GLMI 2019)

Abstract

Quality assessment of different Magnetic Resonance Fingerprinting (MRF) sequences and their corresponding dictionaries remains an unsolved problem. In this work we present a method in which we approach analysis of MRF dictionaries by performing dimensionality reduction and representing them as low-dimensional point sets (embeddings). Dimensionality reduction was performed using a modification of the t-Distributed Stochastic Neighbor Embedding (t-SNE) algorithm. First, we demonstrated stability of calculated embeddings that allows neglecting the stochastic nature of t-SNE. Next, we proposed and analyzed two algorithms for comparing the embeddings. Finally, we performed two simulations in which we reduced the MRF sequence/dictionary in length or size and analyzed the influence of this reduction on the resulting embedding. We believe that this research can pave the way to development of a software tool for analysis, including better understanding, optimization and comparison, of different MRF sequences.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Ma, D., et al.: Magnetic resonance fingerprinting. Nature 495, 187 (2013)

    Article  Google Scholar 

  2. Jiang, Y., Ma, D., Seiberlich, N., Gulani, V., Griswold, M.A.: MR fingerprinting using fast imaging with steady state precession (FISP) with spiral readout. Magn. Reson. Med. 74(6), 1621–1631 (2015)

    Article  Google Scholar 

  3. Cohen, O., Rosen, M.S.: Algorithm comparison for schedule optimization in MR fingerprinting. Magn. Reson. Imag. 41, 15–21 (2017)

    Article  Google Scholar 

  4. Van der Maaten, L., Postma, E., Van den Herik, J.: Dimensionality reduction: a comparative review. J. Mach. Learn. Res. 10, 66–71 (2009)

    Google Scholar 

  5. Van der Maaten, L., Hinton, G.: Visualizing data using t-SNE. J. Mach. Learn. Res. 9, 2579–2605 (2008)

    MATH  Google Scholar 

  6. Chen, Y., Medioni, G.: Object modelling by registration of multiple range images. Image Vision Comput. 10(3), 145–155 (1992)

    Article  Google Scholar 

  7. Zinßer, T., Schmidt, J., Niemann, H.: Point set registration with integrated scale estimation. In: Proceedings of International Conference on Pattern Recognition and Information Processing, pp. 116–119, January 2005

    Google Scholar 

  8. Scheffler, K.: A pictorial description of steady-states in rapid magnetic resonance imaging. Concept. Magn. Reson. 11(5), 291–304 (1999)

    Article  Google Scholar 

  9. Pezzotti, N., Höllt, T., Lelieveldt, B.P.F., Eisemann, E., Vilanova, A.: Hierarchical stochastic neighbor embedding. Comput. Graph. Forum 35, 21–30 (2016)

    Article  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Oleh Dzyubachyk .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2019 Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Dzyubachyk, O., Koolstra, K., Pezzotti, N., Lelieveldt, B.P.F., Webb, A., Börnert, P. (2019). Comparative Analysis of Magnetic Resonance Fingerprinting Dictionaries via Dimensionality Reduction. In: Zhang, D., Zhou, L., Jie, B., Liu, M. (eds) Graph Learning in Medical Imaging. GLMI 2019. Lecture Notes in Computer Science(), vol 11849. Springer, Cham. https://doi.org/10.1007/978-3-030-35817-4_6

Download citation

  • DOI: https://doi.org/10.1007/978-3-030-35817-4_6

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-35816-7

  • Online ISBN: 978-3-030-35817-4

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics