Abstract
In medical imaging, deep learning has been applied to segmentation and classification tasks successfully, whereas its use for image registration tasks is still limited. The use of discrete registration can alleviate the problems limiting the use of CNN based registration for large displacements by helping to capture more complex deformations. We evaluate different building blocks of learning based discrete registration for the CuRIOUS multimodal image registration challenge. We also propose a new attention module, which estimates information contents of a grid point, compare different loss functions and evaluate the influence of self-supervised pre-training of feature extraction step.
This work is funded by the German Research Foundation DFG (HE 7364/2).
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Balakrishnan, G., Zhao, A., Sabuncu, M.R., Guttag, J., Dalca, A.V.: VoxelMorph: a learning framework for deformable medical image registration. IEEE Trans. Med. Imaging 38(8), 1788–1800 (2019)
Blendowski, M., Heinrich, M.P.: Learning interpretable multi-modal features for alignment with supervised iterative descent. In: International Conference on Medical Imaging with Deep Learning, pp. 73–83 (2019)
Dosovitskiy, A., et al.: FlowNet: learning optical flow with convolutional networks. In: Proceedings of the IEEE International Conference on Computer Vision, pp. 2758–2766 (2015)
Heinrich, M.P.: Intra-operative ultrasound to MRI fusion with a public multimodal discrete registration tool. In: Stoyanov, D., et al. (eds.) POCUS/BIVPCS/CuRIOUS/CPM 2018. LNCS, vol. 11042, pp. 159–164. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-01045-4_19
Heinrich, M.P.: Closing the gap between deep and conventional image registration using probabilistic dense displacement networks. In: Shen, D., et al. (eds.) MICCAI 2019, Part VI. LNCS, vol. 11769, pp. 50–58. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32226-7_6
Heinrich, M.P., Jenkinson, M., Papież, B.W., Brady, S.M., Schnabel, J.A.: Towards realtime multimodal fusion for image-guided interventions using self-similarities. In: Mori, K., Sakuma, I., Sato, Y., Barillot, C., Navab, N. (eds.) MICCAI 2013, Part I. LNCS, vol. 8149, pp. 187–194. Springer, Heidelberg (2013). https://doi.org/10.1007/978-3-642-40811-3_24
Hering, A., Kuckertz, S., Heldmann, S., Heinrich, M.P.: Enhancing label-driven deep deformable image registration with local distance metrics for state-of-the-art cardiac motion tracking. In: Handels, H., Deserno, T., Maier, A., Maier-Hein, K., Palm, C., Tolxdorff, T. (eds.) Bildverarbeitung für die Medizin 2019. Informatik aktuell, pp. 309–314. Springer, Wiesbaden (2019). https://doi.org/10.1007/978-3-658-25326-4_69
Schlemper, J., et al.: Attention gated networks: learning to leverage salient regions in medical images. Med. Image Anal. 53, 197–207 (2019)
Xiao, Y., et al.: Evaluation of MRI to ultrasound registration methods for brain shift correction: The curious2018 challenge. arXiv preprint: arXiv:1904.10535 (2019)
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2019 Springer Nature Switzerland AG
About this paper
Cite this paper
Ha, I.Y., Heinrich, M.P. (2019). Comparing Deep Learning Strategies and Attention Mechanisms of Discrete Registration for Multimodal Image-Guided Interventions. In: Zhou, L., et al. Large-Scale Annotation of Biomedical Data and Expert Label Synthesis and Hardware Aware Learning for Medical Imaging and Computer Assisted Intervention. LABELS HAL-MICCAI CuRIOUS 2019 2019 2019. Lecture Notes in Computer Science(), vol 11851. Springer, Cham. https://doi.org/10.1007/978-3-030-33642-4_16
Download citation
DOI: https://doi.org/10.1007/978-3-030-33642-4_16
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-33641-7
Online ISBN: 978-3-030-33642-4
eBook Packages: Computer ScienceComputer Science (R0)