Abstract
Streptococcus pneumoniae causes diseases such as pneumonia, otitis media, meningitis, and bacteremia. As such, this pathogen survives and adapts to different environmental stimuli and withstands stress conditions encountered during colonization, dissemination, and infection in the respective host compartments. Recent studies designate the bacterial signaling nucleotide cyclic di-adenosine monophosphate (cyclic di-AMP) as an important facet to pneumococcal physiology and virulence. In this chapter, we will describe the signaling network and the role of cyclic di-AMP as a second messenger in pneumococci. In S. pneumoniae, cyclic di-AMP is produced by a sole diadenylate cyclase, CdaA, and is catabolized by two phosphodiesterases, Pde1 and Pde2. cyclic di-AMP is secreted through an unidentified mechanism which may impact host–pathogen interactions. The gene encoding CdaA is essential, and perturbation of cyclic di-AMP levels affects adaptation to stress, epithelial cell adhesion, and pneumococcal virulence, demonstrating that cyclic di-AMP is a pervasive molecule in pathogenesis. A Trk-family cyclic di-AMP binding protein, CabP, has been characterized as a mediator of potassium uptake via the transporter TrkH. Potassium levels affect expression of CdaA, and CabP modulates cyclic di-AMP homeostasis, suggesting that cyclic di-AMP plays a fundamental role in ion transport. Nevertheless, repercussions of cyclic di-AMP signaling discussed here allude to the existence of additional cyclic di-AMP effectors. Future avenues of research and outlying questions of interest are addressed.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
CDC (2015) Pneumococcal disease. In: Hamborsky J, Kroger A, Wolfe S (eds) Epidemiology and prevention of vaccine-preventable diseases, 13th edn. Public Health Foundation, Washington, DC, pp 279–296
Steel HC, Cockeran R, Anderson R, Feldman C (2013) Overview of community-acquired pneumonia and the role of inflammatory mechanisms in the immunopathogenesis of severe pneumococcal disease. Mediat Inflamm 2013:490346. https://doi.org/10.1155/2013/490346
Gomez-Mejia A, Gamez G, Hammerschmidt S (2017) Streptococcus pneumoniae two-component regulatory systems: the interplay of the pneumococcus with its environment. Int J Med Microbiol. https://doi.org/10.1016/j.ijmm.2017.11.012
Yesilkaya H, Andisi VF, Andrew PW, Bijlsma JJ (2013) Streptococcus pneumoniae and reactive oxygen species: an unusual approach to living with radicals. Trends Microbiol 21(4):187–195. https://doi.org/10.1016/j.tim.2013.01.004
Kwon HY, Kim SW, Choi MH, Ogunniyi AD, Paton JC, Park SH, Pyo SN, Rhee DK (2003) Effect of heat shock and mutations in ClpL and ClpP on virulence gene expression in Streptococcus pneumoniae. Infect Immun 71(7):3757–3765
Hajaj B, Yesilkaya H, Benisty R, David M, Andrew PW, Porat N (2012) Thiol peroxidase is an important component of Streptococcus pneumoniae in oxygenated environments. Infect Immun 80(12):4333–4343. https://doi.org/10.1128/IAI.00126-12
Spellerberg B, Cundell DR, Sandros J, Pearce BJ, Idanpaan-Heikkila I, Rosenow C, Masure HR (1996) Pyruvate oxidase, as a determinant of virulence in Streptococcus pneumoniae. Mol Microbiol 19(4):803–813
Rai P, Parrish M, Tay IJ, Li N, Ackerman S, He F, Kwang J, Chow VT, Engelward BP (2015) Streptococcus pneumoniae secretes hydrogen peroxide leading to DNA damage and apoptosis in lung cells. Proc Natl Acad Sci USA 112(26):E3421–E3430. https://doi.org/10.1073/pnas.1424144112
Bassoe CF, Bjerknes R (1985) Phagocytosis by human leukocytes, phagosomal pH and degradation of seven species of bacteria measured by flow cytometry. J Med Microbiol 19(1):115–125. https://doi.org/10.1099/00222615-19-1-115
Andersen NE, Gyring J, Hansen AJ, Laursen H, Siesjo BK (1989) Brain acidosis in experimental pneumococcal meningitis. J Cereb Blood Flow Metab 9(3):381–387. https://doi.org/10.1038/jcbfm.1989.57
Pilishvili T, Lexau C, Farley MM, Hadler J, Harrison LH, Bennett NM, Reingold A, Thomas A, Schaffner W, Craig AS, Smith PJ, Beall BW, Whitney CG, Moore MR, Active Bacterial Core Surveillance/Emerging Infections Program N (2010) Sustained reductions in invasive pneumococcal disease in the era of conjugate vaccine. J Infect Dis 201(1):32–41. https://doi.org/10.1086/648593
Henrichsen J (1995) Six newly recognized types of Streptococcus pneumoniae. J Clin Microbiol 33(10):2759–2762
Yother J (2011) Capsules of Streptococcus pneumoniae and other bacteria: paradigms for polysaccharide biosynthesis and regulation. Annu Rev Microbiol 65:563–581. https://doi.org/10.1146/annurev.micro.62.081307.162944
Ortqvist A (2001) Pneumococcal vaccination: current and future issues. Eur Respir J 18(1):184–195
Obolski U, Lourenco J, Thompson C, Thompson R, Gori A, Gupta S (2018) Vaccination can drive an increase in frequencies of antibiotic resistance among nonvaccine serotypes of Streptococcus pneumoniae. Proc Natl Acad Sci USA 115(12):3102–3107. https://doi.org/10.1073/pnas.1718712115
Commichau FM, Heidemann JL, Ficner R, Stulke J (2018) Making and breaking of an essential poison: the cyclases and phosphodiesterases that produce and degrade the essential second messenger cyclic di-AMP in bacteria. J Bacteriol. https://doi.org/10.1128/JB.00462-18
Corrigan RM, Grundling A (2013) Cyclic di-AMP: another second messenger enters the fray. Nat Rev Microbiol 11(8):513–524. https://doi.org/10.1038/nrmicro3069
Bai Y, Yang J, Eisele LE, Underwood AJ, Koestler BJ, Waters CM, Metzger DW, Bai G (2013) Two DHH subfamily 1 proteins in Streptococcus pneumoniae possess cyclic di-AMP phosphodiesterase activity and affect bacterial growth and virulence. J Bacteriol 195(22):5123–5132. https://doi.org/10.1128/JB.00769-13
Zarrella TM, Metzger DW, Bai G (2018) Stress suppressor screening leads to detection of regulation of cyclic di-AMP homeostasis by a Trk family effector protein in Streptococcus pneumoniae. J Bacteriol 200:e00045-18. https://doi.org/10.1128/JB.00045-18
Pham TH, Liang ZX, Marcellin E, Turner MS (2016) Replenishing the cyclic-di-AMP pool: regulation of diadenylate cyclase activity in bacteria. Curr Genet 62(4):731–738. https://doi.org/10.1007/s00294-016-0600-8
Gundlach J, Herzberg C, Kaever V, Gunka K, Hoffmann T, Weiss M, Gibhardt J, Thurmer A, Hertel D, Daniel R, Bremer E, Commichau FM, Stulke J (2017) Control of potassium homeostasis is an essential function of the second messenger cyclic di-AMP in Bacillus subtilis. Sci Signal 10(475):eaal3011. https://doi.org/10.1126/scisignal.aal3011
Mehne FM, Gunka K, Eilers H, Herzberg C, Kaever V, Stulke J (2013) Cyclic di-AMP homeostasis in Bacillus subtilis: both lack and high level accumulation of the nucleotide are detrimental for cell growth. J Biol Chem 288(3):2004–2017. https://doi.org/10.1074/jbc.M112.395491
Rismondo J, Gibhardt J, Rosenberg J, Kaever V, Halbedel S, Commichau FM (2015) Phenotypes associated with the essential diadenylate cyclase CdaA and its potential regulator CdaR in the human pathogen Listeria monocytogenes. J Bacteriol 198(3):416–426. https://doi.org/10.1128/JB.00845-15
Zhu Y, Pham TH, Nhiep TH, Vu NM, Marcellin E, Chakrabortti A, Wang Y, Waanders J, Lo R, Huston WM, Bansal N, Nielsen LK, Liang ZX, Turner MS (2016) Cyclic-di-AMP synthesis by the diadenylate cyclase CdaA is modulated by the peptidoglycan biosynthesis enzyme GlmM in Lactococcus lactis. Mol Microbiol 99(6):1015–1027. https://doi.org/10.1111/mmi.13281
Bowman L, Zeden MS, Schuster CF, Kaever V, Grundling A (2016) New insights into the cyclic di-adenosine monophosphate (c-di-AMP) degradation pathway and the requirement of the cyclic dinucleotide for acid stress resistance in Staphylococcus aureus. J Biol Chem 291(53):26970–26986. https://doi.org/10.1074/jbc.M116.747709
Mengin-Lecreulx D, van Heijenoort J (1996) Characterization of the essential gene glmM encoding phosphoglucosamine mutase in Escherichia coli. J Biol Chem 271(1):32–39
Shimazu K, Takahashi Y, Uchikawa Y, Shimazu Y, Yajima A, Takashima E, Aoba T, Konishi K (2008) Identification of the Streptococcus gordonii glmM gene encoding phosphoglucosamine mutase and its role in bacterial cell morphology, biofilm formation, and sensitivity to antibiotics. FEMS Immunol Med Microbiol 53(2):166–177. https://doi.org/10.1111/j.1574-695X.2008.00410.x
Gundlach J, Mehne FM, Herzberg C, Kampf J, Valerius O, Kaever V, Stulke J (2015) An essential poison: synthesis and degradation of cyclic di-AMP in Bacillus subtilis. J Bacteriol 197(20):3265–3274. https://doi.org/10.1128/JB.00564-15
Molzen TE, Burghout P, Bootsma HJ, Brandt CT, van der Gaast-de Jongh CE, Eleveld MJ, Verbeek MM, Frimodt-Moller N, Ostergaard C, Hermans PW (2011) Genome-wide identification of Streptococcus pneumoniae genes essential for bacterial replication during experimental meningitis. Infect Immun 79(1):288–297. https://doi.org/10.1128/IAI.00631-10
Cron LE, Stol K, Burghout P, van Selm S, Simonetti ER, Bootsma HJ, Hermans PW (2011) Two DHH subfamily 1 proteins contribute to pneumococcal virulence and confer protection against pneumococcal disease. Infect Immun 79(9):3697–3710. https://doi.org/10.1128/IAI.01383-10
Woodward JJ, Iavarone AT, Portnoy DA (2010) c-di-AMP secreted by intracellular Listeria monocytogenes activates a host type I interferon response. Science 328(5986):1703–1705. https://doi.org/10.1126/science.1189801
Kaplan Zeevi M, Shafir NS, Shaham S, Friedman S, Sigal N, Nir Paz R, Boneca IG, Herskovits AA (2013) Listeria monocytogenes multidrug resistance transporters and cyclic di-AMP, which contribute to type I interferon induction, play a role in cell wall stress. J Bacteriol 195(23):5250–5261. https://doi.org/10.1128/JB.00794-13
Barker JR, Koestler BJ, Carpenter VK, Burdette DL, Waters CM, Vance RE, Valdivia RH (2013) STING-dependent recognition of cyclic di-AMP mediates type I interferon responses during Chlamydia trachomatis infection. MBio 4(3):e00018–e00013. https://doi.org/10.1128/mBio.00018-13
Sauer JD, Sotelo-Troha K, von Moltke J, Monroe KM, Rae CS, Brubaker SW, Hyodo M, Hayakawa Y, Woodward JJ, Portnoy DA, Vance RE (2011) The N-ethyl-N-nitrosourea-induced Goldenticket mouse mutant reveals an essential function of Sting in the in vivo interferon response to Listeria monocytogenes and cyclic dinucleotides. Infect Immun 79(2):688–694. https://doi.org/10.1128/IAI.00999-10
Parvatiyar K, Zhang Z, Teles RM, Ouyang S, Jiang Y, Iyer SS, Zaver SA, Schenk M, Zeng S, Zhong W, Liu ZJ, Modlin RL, Liu YJ, Cheng G (2012) The helicase DDX41 recognizes the bacterial secondary messengers cyclic di-GMP and cyclic di-AMP to activate a type I interferon immune response. Nat Immunol 13(12):1155–1161. https://doi.org/10.1038/ni.2460
Bowie AG (2012) Innate sensing of bacterial cyclic dinucleotides: more than just STING. Nat Immunol 13(12):1137–1139. https://doi.org/10.1038/ni.2469
Yamamoto T, Hara H, Tsuchiya K, Sakai S, Fang R, Matsuura M, Nomura T, Sato F, Mitsuyama M, Kawamura I (2012) Listeria monocytogenes strain-specific impairment of the TetR regulator underlies the drastic increase in cyclic di-AMP secretion and beta interferon-inducing ability. Infect Immun 80(7):2323–2332. https://doi.org/10.1128/IAI.06162-11
Corrigan RM, Abbott JC, Burhenne H, Kaever V, Grundling A (2011) c-di-AMP is a new second messenger in Staphylococcus aureus with a role in controlling cell size and envelope stress. PLoS Pathog 7(9):e1002217. https://doi.org/10.1371/journal.ppat.1002217
Luo Y, Helmann JD (2012) Analysis of the role of Bacillus subtilis sigma(M) in beta-lactam resistance reveals an essential role for c-di-AMP in peptidoglycan homeostasis. Mol Microbiol 83(3):623–639. https://doi.org/10.1111/j.1365-2958.2011.07953.x
Oppenheimer-Shaanan Y, Wexselblatt E, Katzhendler J, Yavin E, Ben-Yehuda S (2011) c-di-AMP reports DNA integrity during sporulation in Bacillus subtilis. EMBO Rep 12(6):594–601. https://doi.org/10.1038/embor.2011.77
Malli R, Epstein W (1998) Expression of the Kdp ATPase is consistent with regulation by turgor pressure. J Bacteriol 180(19):5102–5108
Meury J, Robin A, Monnier-Champeix P (1985) Turgor-controlled K+ fluxes and their pathways in Escherichia coli. Eur J Biochem 151(3):613–619
Epstein W (1986) Osmoregulation by potassium transport in Escherichia coli. FEMS Microbiol Lett 39:73–78
Dinnbier U, Limpinsel E, Schmid R, Bakker EP (1988) Transient accumulation of potassium glutamate and its replacement by trehalose during adaptation of growing cells of Escherichia coli K-12 to elevated sodium chloride concentrations. Arch Microbiol 150(4):348–357
Holtmann G, Bakker EP, Uozumi N, Bremer E (2003) KtrAB and KtrCD: two K+ uptake systems in Bacillus subtilis and their role in adaptation to hypertonicity. J Bacteriol 185(4):1289–1298
Gries CM, Bose JL, Nuxoll AS, Fey PD, Bayles KW (2013) The Ktr potassium transport system in Staphylococcus aureus and its role in cell physiology, antimicrobial resistance and pathogenesis. Mol Microbiol 89(4):760–773. https://doi.org/10.1111/mmi.12312
Csonka LN (1989) Physiological and genetic responses of bacteria to osmotic stress. Microbiol Rev 53(1):121–147
Ferguson GP, McLaggan D, Booth IR (1995) Potassium channel activation by glutathione-S-conjugates in Escherichia coli: protection against methylglyoxal is mediated by cytoplasmic acidification. Mol Microbiol 17(6):1025–1033
Castaneda-Garcia A, Do TT, Blazquez J (2011) The K+ uptake regulator TrkA controls membrane potential, pH homeostasis and multidrug susceptibility in Mycobacterium smegmatis. J Antimicrob Chemother 66(7):1489–1498. https://doi.org/10.1093/jac/dkr165
Kashket ER, Barker SL (1977) Effects of potassium ions on the electrical and pH gradients across the membrane of Streptococcus lactis cells. J Bacteriol 130(3):1017–1023
Hughes FM Jr, Cidlowski JA (1999) Potassium is a critical regulator of apoptotic enzymes in vitro and in vivo. Adv Enzym Regul 39:157–171
Vasak M, Schnabl J (2016) Sodium and potassium ions in proteins and enzyme catalysis. Met Ions Life Sci 16:259–290. https://doi.org/10.1007/978-3-319-21756-7_8
Tholema N, Bakker EP, Suzuki A, Nakamura T (1999) Change to alanine of one out of four selectivity filter glycines in KtrB causes a two orders of magnitude decrease in the affinities for both K+ and Na+ of the Na+ dependent K+ uptake system KtrAB from Vibrio alginolyticus. FEBS Lett 450(3):217–220
Hanelt I, Tholema N, Kroning N, Vor der Bruggen M, Wunnicke D, Bakker EP (2011) KtrB, a member of the superfamily of K+ transporters. Eur J Cell Biol 90(9):696–704. https://doi.org/10.1016/j.ejcb.2011.04.010
Diskowski M, Mikusevic V, Stock C, Hanelt I (2015) Functional diversity of the superfamily of K(+) transporters to meet various requirements. Biol Chem 396(9–10):1003–1014. https://doi.org/10.1515/hsz-2015-0123
Altendorf K, Epstein W (1993) Kdp-ATPase of Escherichia coli. Cell Physiol Biochem 4:160–168
Altendorf K, Voelkner P, Puppe W (1994) The sensor kinase KdpD and the response regulator KdpE control expression of the kdpFABC operon in Escherichia coli. Res Microbiol 145(5–6):374–381
Alahari A, Ballal A, Apte SK (2001) Regulation of potassium-dependent Kdp-ATPase expression in the nitrogen-fixing cyanobacterium Anabaena torulosa. J Bacteriol 183(19):5778–5781. https://doi.org/10.1128/JB.183.19.5778-5781.2001
Bai Y, Yang J, Zarrella TM, Zhang Y, Metzger DW, Bai G (2014) Cyclic di-AMP impairs potassium uptake mediated by a cyclic di-AMP binding protein in Streptococcus pneumoniae. J Bacteriol 196(3):614–623. https://doi.org/10.1128/JB.01041-13
Corrigan RM, Campeotto I, Jeganathan T, Roelofs KG, Lee VT, Grundling A (2013) Systematic identification of conserved bacterial c-di-AMP receptor proteins. Proc Natl Acad Sci USA 110(22):9084–9089. https://doi.org/10.1073/pnas.1300595110
Kim H, Youn SJ, Kim SO, Ko J, Lee JO, Choi BS (2015) Structural studies of potassium transport protein KtrA regulator of conductance of K+ (RCK) C domain in complex with cyclic diadenosine monophosphate (c-di-AMP). J Biol Chem 290:16393–16402. https://doi.org/10.1074/jbc.M115.641340
Moscoso JA, Schramke H, Zhang Y, Tosi T, Dehbi A, Jung K, Grundling A (2016) Binding of cyclic di-AMP to the Staphylococcus aureus sensor kinase KdpD occurs via the universal stress protein domain and downregulates the expression of the Kdp potassium transporter. J Bacteriol 198(1):98–110. https://doi.org/10.1128/JB.00480-15
Albright RA, Ibar JL, Kim CU, Gruner SM, Morais-Cabral JH (2006) The RCK domain of the KtrAB K+ transporter: multiple conformations of an octameric ring. Cell 126(6):1147–1159. https://doi.org/10.1016/j.cell.2006.08.028
Underwood AJ, Zhang Y, Metzger DW, Bai G (2014) Detection of cyclic di-AMP using a competitive ELISA with a unique pneumococcal cyclic di-AMP binding protein. J Microbiol Methods 107:58–62. https://doi.org/10.1016/j.mimet.2014.08.026
Epstein W (2003) The roles and regulation of potassium in bacteria. Prog Nucleic Acid Res Mol Biol 75:293–320
Commichau FM, Stulke J (2018) Coping with an essential poison: a genetic suppressor analysis corroborates a key function of c-di-AMP in controlling potassium ion homeostasis in Gram-positive bacteria. J Bacteriol. https://doi.org/10.1128/JB.00166-18
Smith WM, Pham TH, Lei L, Dou J, Soomro AH, Beatson SA, Dykes GA, Turner MS (2012) Heat resistance and salt hypersensitivity in Lactococcus lactis due to spontaneous mutation of llmg_1816 (gdpP) induced by high-temperature growth. Appl Environ Microbiol 78(21):7753–7759. https://doi.org/10.1128/AEM.02316-12
Whiteley AT, Pollock AJ, Portnoy DA (2015) The PAMP c-di-AMP is essential for Listeria monocytogenes growth in rich but not minimal media due to a toxic increase in (p)ppGpp. Cell Host Microbe 17(6):788–798. https://doi.org/10.1016/j.chom.2015.05.006
Corrigan RM, Bowman L, Willis AR, Kaever V, Grundling A (2015) Cross-talk between two nucleotide-signaling pathways in Staphylococcus aureus. J Biol Chem 290(9):5826–5839. https://doi.org/10.1074/jbc.M114.598300
Rao F, See RY, Zhang D, Toh DC, Ji Q, Liang ZX (2010) YybT is a signaling protein that contains a cyclic dinucleotide phosphodiesterase domain and a GGDEF domain with ATPase activity. J Biol Chem 285(1):473–482. https://doi.org/10.1074/jbc.M109.040238
Tadmor K, Pozniak Y, Burg Golani T, Lobel L, Brenner M, Sigal N, Herskovits AA (2014) Listeria monocytogenes MDR transporters are involved in LTA synthesis and triggering of innate immunity during infection. Front Cell Infect Microbiol 4:16. https://doi.org/10.3389/fcimb.2014.00016
Schwartz KT, Carleton JD, Quillin SJ, Rollins SD, Portnoy DA, Leber JH (2012) Hyperinduction of host beta interferon by a Listeria monocytogenes strain naturally overexpressing the multidrug efflux pump MdrT. Infect Immun 80(4):1537–1545. https://doi.org/10.1128/IAI.06286-11
Acknowledgments
The writing of this chapter by TZ was supported in part by the Intramural Research Program of the National Institutes of Health (NIH), National Cancer Institute, Center for Cancer Research. GB is a subrecipient of NIH grant R35HL135756.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Ethics declarations
The authors declare no conflict of interest.
Rights and permissions
Copyright information
© 2020 Springer Nature Switzerland AG
About this chapter
Cite this chapter
Zarrella, T.M., Bai, G. (2020). Cyclic di-AMP Signaling in Streptococcus pneumoniae . In: Chou, SH., Guiliani, N., Lee, V., Römling, U. (eds) Microbial Cyclic Di-Nucleotide Signaling. Springer, Cham. https://doi.org/10.1007/978-3-030-33308-9_27
Download citation
DOI: https://doi.org/10.1007/978-3-030-33308-9_27
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-33307-2
Online ISBN: 978-3-030-33308-9
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)