Abstract
Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease involving progressive and selective loss of motor neurons, muscle weakness, paralysis and death. The pathogenesis of ALS is not clearly understood, while reliable prognostic markers have not been identified to detect symptoms at earlier time points. The rapid development of microarray technology offers great potential for simultaneous analysis of the transcriptional expression of thousands of genes, aiming to determine novel candidate targets for efficient treatment. Additionally, metabolomics, as a high-throughput approach, is gaining significant attention in ALS research providing an opportunity to develop predictive biomarkers that may be utilized as indicators of clinical symptoms of ALS. In this review, recent evidences from gene expression profiling studies in ALS are illustrated in order to examine molecular signatures related to the disease’s pathogenesis and potential discovery of therapeutic targets. Moreover, potent challenges are presented regarding the utilization of the metabolomics approach as a diagnostic tool in context with distinctive biomarkers’ identification.
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References
Aronica E, Baas F, Iyer A, ten Asbroek A, Morello G, Cavallaro S (2015) Molecular classification of amyotrophic lateral sclerosis by unsupervised clustering of gene expression in motor cortex. Neurobiol Dis 74:359–376
Babu GN, Kumar A, Chandra R, Puri SK, Singh RL, Kalita J, Misra UK (2008) Oxidant-antioxidant imbalance in the erythrocytes of sporadic amyotrophic lateral sclerosis patients correlates with the progression of disease. Neurochem Int 52:1284–1289
Bingol K (2018) Recent Advances in Targeted and Untargeted Metabolomics by NMR and MS/NMR Methods. High Throughput 7:E9
Blasco H, Corcia P, Moreau C, Veau S, Fournier C, Vourc’h P, Emond P, Gordon P, Pradat PF, Praline J, Devos D, Nadal-Desbarats L, Andres CR (2010) 1H-NMR-based metabolomic profiling of CSF in early amyotrophic lateral sclerosis. PLoS One 5:e13223
Boutahar N, Wierinckx A, Camdessanche J, Antoine J, Reynaud E, Lassabliere F, Lachuer J, Borg J (2011) Differential effect of oxidative or exitotoxic stress on the transcriptional profile of amyotrophic lateral sclerosis-linked mutant SOD1 cultured neurons. J Neurosci Res 89:1439–1450
Brooks BR, Jorgenson JA, Newhouse BJ, Shefner JM, Agnese W (2018) Edaravone in the treatment of amyotrophic lateral sclerosis: efficacy and access to therapy – a roundtable discussion. Am J Manag Care 24(9 Suppl):S175–S186
Bucchia M, Ramirez A, Parente V, Simone C, Nizzardo M, Magri F, Dametti S, Corti S (2015) Therapeutic development in amyotrophic lateral sclerosis. Clin Ther 37:668–680
Buratti E, Baralle F (2001) Characterization and functional implications of the RNA binding properties of nuclear factor TDP-43, a novel splicing regulator of CFTR exon 9. J Biol Chem 276:36337–36343
Buratti E, Baralle F (2008) Multiple roles of TDP-43 in gene expression, splicing regulation, and human disease. Front Biosci 13:867–878
Cheah B, Vucic S, Krishnan A, Kiernan M (2010) Riluzole, neuroprotection and amyotrophic lateral sclerosis. Curr Med Chem 17:1942–1199
Choi JK, Küstermann E, Dedeoglu A, Jenkins BG (2009) Magnetic resonance spectroscopy of regional brain metabolite markers in FALS mice and the effects of dietary creatine supplementation. Eur J Neurosci 30:2143–2150
Cooper-Knock J, Kirby J, Ferraiuolo L, Heath P, Rattray M, Shaw P (2012) Gene expression profiling in human neurodegenerative disease. Nat Rev Neurol 8:518–530
de Oliveira GP, Maximino J, Maschietto M, Zanoteli E, Puga R, Lima L, Carraro D, Chadi G (2014) Early gene expression changes in skeletal muscle from SOD1(G93A) amyotrophic lateral sclerosis animal model. Cell Mol Neurobiol 34:451–462
DeJesus-Hernandez M, Mackenzie I, Boeve B, Boxer A, Baker M, Rutherford N, Nicholson A, Finch N, Flynn H, Adamson J et al (2010) Expanded GGGGCC hexanucleotide repeat in noncoding region of C9ORF72 causes chromosome 9p-linked FTD and ALS. Neuron 72:245–256
Deng H, Chen W, Hong S, Boycott K, Gorrie G, Siddique N, Yang Y (2011) Mutations in UBQLN2 cause dominant X-linked juvenile and adult-onset alS and ALS/dementia. Nature 477:211–215
Deng H, Gao K, Jankovic J (2014) The role of FUS gene variants in neurodegenerative diseases. Nat Rev Neurol 10(6):337–348
Droppelmann C, Campos-Melo D, Ishtiaq M, Volkening K, Strong M (2014) RNA metabolism in ALS: when normal processes become pathological. Amyotroph Lateral Scler Frontotemporal Degener 15:321–336
Foran E, Bogush A, Goffredo M, Roncaglia P, Gustincich S, Pasinelli P, Trotti D (2011) Motor neuron impairment mediated by a sumoylated fragment of the glial glutamate transporter EAAT2. Glia 59:1719–1731
Foran E, Rosenblum L, Bogush A, Pasinelli P, Trotti D (2014) Sumoylation of the astroglial glutamate transporter EAAT2 governs its intracellular compartmentalization. Glia 62:1241–1253
Greenway M, Andersen P, Russ C, Ennis S, Cashman S, Donaghy C, Patterson V, Swingler R, Kieran D, Prehn J, Morrison K, Green A, Acharya K, Brown R, Hardiman O (2006) ANG mutations segregate with familial and ‘sporadic’ amyotrophic lateral sclerosis. Nat Genet 38:411–413
Gupta S, Kim S, Wang Y, Dinasarapu A, Subramaniam S (2014) Statistical insights into major human muscular diseases. Hum Mol Genet 23:3772–3778
Heath P, Kirby J, Shaw P (2013) Investigating cell death mechanisms in amyotrophic lateral sclerosis using transcriptomics. Front Cell Neurosci 7:259
Hoffman NJ (2017) Omics and exercise: global approaches for mapping exercise biological networks. Cold Spring Harb Perspect Med 7:a029884
Honda D, Ishigaki S, Iguchi Y, Fujioka Y, Udagawa T, Masuda A, Ohno K, Katsuno M, Sobue G (2013) The TDP-43 neurotoxicity in Drosophila. PLoS One 8:e57214
Krokidis MG, Vlamos P (2018) Transcriptomics in amyotrophic lateral sclerosis. Front Biosci (Elite Ed) 10:103–121
Kudo L, Parfenova L, Vi N, Lau K, Pomakian J, Valdmanis P, Rouleau G, Vinters H, Wiedau-Pazos M, Karsten S (2010) Integrative gene-tissue microarray-based approach for identification of human disease biomarkers: application to amyotrophic lateral sclerosis. Hum Mol Genet 19(16):3233–3253
Kumimoto E, Fore T, Zhang B (2013) Transcriptome profiling following neuronal and glial expression of ALS-linked SOD1 in Drosophila. G3 (Bethesda) 3:695–708
Maruyama H, Morino H, Ito H, Izumi Y, Kato H, Watanabe Y, Kinoshita Y, Kamada M, Nodera H, Suzuki H, Komure O, Matsuura S, Kobatake K, Morimoto N, Abe K, Suzuki N, Aoki M, Kawata A, Hirai T, Kato T, Ogasawara K, Hirano A, Takumi T, Kusaka H, Hagiwara K, Kaji R, Kawakami H (2010) Mutations of optineurin in amyotrophic lateral sclerosis. Nature 465:223–226
Maximino J, de Oliveira G, Alves C, Chadi G (2014) Deregulated expression of cytoskeleton related genes in the spinal cord and sciatic nerve of presymptomatic SOD1(G93A) Amyotrophic Lateral Sclerosis mouse model. Front Cell Neurosci 8:148
Narayanan R, Mangelsdorf M, Panwar A, Butler T, Noakes P, Wallace R (2012) Identification of RNA bound to the TDP-43 ribonucleoprotein complex in the adult mouse brain. Amyotroph Lateral Scler Frontotemporal Degener 14:252–260
Nardo G, Iennaco R, Fusi N, Heath P, Marino M, Trolese M, Ferraiuolo L, Lawrence N, Shaw P, Bendotti C (2013) Transcriptomic indices of fast and slow disease progression in two mouse models of amyotrophic lateral sclerosis. Brain 136:3305–3332
Niessen HG, Debska-Vielhaber G, Sander K, Angenstein F, Ludolph AC, Hilfert L, Willker W, Leibfritz D, Heinze HJ, Kunz WS, Vielhaber S (2007) Metabolic progression markers of neurodegeneration in the transgenic G93A-SOD1 mouse model of amyotrophic lateral sclerosis. Eur J Neurosci 25:1669–1677
Patin F, Baranek T, Vourc’h P, Nadal-Desbarats L, Goossens JF, Marouillat S, Dessein AF, Descat A, Hounoum BM, Bruno C, Watier H, Si-Tahar M, Leman S, Lecron JC, Andres CR, Corcia P, Blasco H (2016) Combined Metabolomics and Transcriptomics Approaches to Assess the IL-6 Blockade as a Therapeutic of ALS: Deleterious Alteration of Lipid Metabolism. Neurotherapeutics 13:905–917
Renton AE, Chio A, Traynor B (2014) State of play in amyotrophic lateral sclerosis genetics. Nat Neurosci 1:17–23
Rosen D, Siddique T, Patterson D, Figlewicz D, Sapp P, Hentati A, Donaldson D, Goto J, O’Regan J, Deng H, Brown R Jr (1993) Mutations in Cu/Zn superoxide dismutase gene are associated with familial amyotrophic lateral sclerosis. Nature 362:59–62
Rozen S, Cudkowicz ME, Bogdanov M, Matson WR, Kristal BS, Beecher C, Harrison S, Vouros P, Flarakos J, Vigneau-Callahan K, Matson TD, Newhall KM, Beal MF, Brown RH Jr, Kaddurah-Daouk R (2005) Metabolomic analysis and signatures in motor neuron disease. Metabolomics 1:101–108
Saris C, Groen E, van Vught P, van Es M, Blauw H, Veldink J, van den Berg L (2013) Gene expression profile of SOD1-G93A mouse spinal cord, blood and muscle. Amyotroph Lateral Scler Frontotemporal Degener 14:190–198
Smith EF, Shaw PJ, De Vos KJ (2019) The role of mitochondria in amyotrophic lateral sclerosis. Neurosci Lett 710:132933
Sreedharan J, Blair I, Tripathi V, Hu X, Vance C, Rogelj B, Ackerley S, Durnall J, Williams K, Buratti E, Baralle F, de Belleroche J, Mitchell J, Leigh R, Al-Chalabi A, Miller C, Nicholson G, Shaw C (2008) TDP43 mutations in familial and sporadic amyotrophic lateral sclerosis. Science 319:1668–1672
Takei K, Watanabe K, Yuki S, Akimoto M, Sakata T, Palumbo J (2017) Edaravone and its clinical development for amyotrophic lateral sclerosis. Amyotroph Lateral Scler Frontotemporal Degener 18(sup1):5–10
Wang JH, Byun J, Pennathur S (2010) Analytical approaches to metabolomics and applications to systems biology. Semin Nephrol 30:500–511
Yang Y, Hentati A, Deng H, Dabbagh O, Sasaki T, Hirano M, Hung W, Ouahchi K, Yan J, Azim A, Cole N, Gascon G, Yagmour A, Ben-Hamida M, Pericak-Vance M, Hentati F, Siddique T (2001) The gene encoding alsin, a protein with three guanine-nucleotide exchange factor domains, is mutated in a form of recessive amyotrophic lateral sclerosis. Nat Genet 29:160–165
Yu L, Guan Y, Wu X, Chen Y, Liu Z, Du H, Wang X (2013) Wnt Signaling is altered by spinal cord neuronal dysfunction in amyotrophic lateral sclerosis transgenic mice. Neurochem Res 38:1904–1913
Zhan L, Hanson K, Kim S, Tare A, Tibbetts R (2013) Identification of genetic modifiers of ALS/FTLD-related RNA-binding proteins TDP-43 and FUS have common downstream RNA targets in cortical neurons. FEBS Open Bio 4:1–10
Zoccolella S, Simone IL, Capozzo R, Tortelli R, Leo A, D’Errico E, Logroscino G (2011) An exploratory study of serum urate levels in patients with amyotrophic lateral sclerosis. J Neurol 258:238–243
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Krokidis, M.G. (2020). Transcriptomics and Metabolomics in Amyotrophic Lateral Sclerosis. In: Vlamos, P. (eds) GeNeDis 2018. Advances in Experimental Medicine and Biology, vol 1195. Springer, Cham. https://doi.org/10.1007/978-3-030-32633-3_29
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DOI: https://doi.org/10.1007/978-3-030-32633-3_29
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