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Automatic Vertebrae Recognition from Arbitrary Spine MRI Images by a Hierarchical Self-calibration Detection Framework

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Book cover Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 (MICCAI 2019)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 11767))

Abstract

Automatic vertebrae recognition is crucial in spine diseases diagnosis, treatment planning, and response assessment. Although vertebrae detection has been studied for years, reliably recognizing vertebrae from arbitrary spine MRI images remains a challenge due to varying image characteristics, field of view (FOV) as well as vertebrae appearance. In this paper, we propose a Hierarchical Self-calibration Detection Framework (Hi-scene) to precisely recognize the labels and bounding boxes of all vertebrae in an arbitrary spine MRI image. Hi-scene is designed to first coarsely localize regions where vertebrae exist without the need of a priori knowledge about the scale, image characteristics and FOV; then accurately recognize vertebrae and automatically correct wrong recognitions by an elaborated self-calibration recognition network that embeds message passing into deep learning network. The method is trained and evaluated on a capacious and challenging dataset of 450 MRI scans, and the evaluation results show that our Hi-scene achieves high performance (testing accuracy reaches 0.933) from arbitrary input spine MRI and outperforms other state-of-the-art methods.

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References

  1. Liao, H., Mesfin, A., Luo, J.: Joint vertebrae identification and localization in spinal CT images by combining short-and long-range contextual information. IEEE Trans. Med. Imaging 37(5), 1266–1275 (2018)

    Article  Google Scholar 

  2. Philip, F.: Patient Safety in Surgery. Springer, London (2014). https://doi.org/10.1007/978-1-4471-4369-7

  3. Yang, D., et al.: Automatic vertebra labeling in large-scale 3D CT using deep image-to-image network with message passing and sparsity regularization. In: Niethammer, M., et al. (eds.) IPMI 2017. LNCS, vol. 10265, pp. 633–644. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-59050-9_50

    Chapter  Google Scholar 

  4. Lootus, M., Kadir, T., Zisserman, A.: Vertebrae detection and labelling in lumbar MR images. In: Yao, J., Klinder, T., Li, S. (eds.) Computational Methods and Clinical Applications for Spine Imaging. LNCVB, vol. 17, pp. 219–230. Springer, Cham (2014). https://doi.org/10.1007/978-3-319-07269-2_19

    Chapter  Google Scholar 

  5. Chen, H., et al.: Automatic localization and identification of vertebrae in spine CT via a joint learning model with deep neural networks. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9349, pp. 515–522. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24553-9_63

    Chapter  Google Scholar 

  6. Glocker, B., Zikic, D., Konukoglu, E., Haynor, D.R., Criminisi, A.: Vertebrae localization in pathological spine CT via dense classification from sparse annotations. In: Mori, K., Sakuma, I., Sato, Y., Barillot, C., Navab, N. (eds.) MICCAI 2013. LNCS, vol. 8150, pp. 262–270. Springer, Heidelberg (2013). https://doi.org/10.1007/978-3-642-40763-5_33

    Chapter  Google Scholar 

  7. Zhao, S., et al.: Robust segmentation of intima-media borders with different morphologies and dynamics during the cardiac cycle. IEEE J. Biomed. Health 22(5), 1571–1582 (2018)

    Article  Google Scholar 

  8. Zhao, R., Liao, W., Zou, B., Chen, Z., Li, S.: Weakly-supervised simultaneous evidence identification and segmentation for automated glaucoma diagnosis. In: AAAI (2019)

    Google Scholar 

  9. Gao, Z., et al.: Robust estimation of carotid artery wall motion using the elasticity-based state-space approach. Med. Image Anal. 37, 1–21 (2017)

    Article  Google Scholar 

  10. Ren, S., He, K., Girshick, R., Sun, J.: Faster R-CNN: towards real-time object detection with region proposal networks. In: NIPS, pp. 1–14 (2015)

    Google Scholar 

  11. He, K., Zhang, X., Ren, S., Sun, J.: Deep residual learning for image recognition. In: CVPR, pp. 770–778 (2016)

    Google Scholar 

  12. Lin, T., Dollar, P., Girshick, R., He, K., Hariharan, B., Belon, S.: Feature pyramid networks for object detection. In: CVPR, pp. 2117–2125 (2017)

    Google Scholar 

  13. Yedidia, J., Freeman, W., Weiss, Y.: Understanding belief propagation and its generalizations. Exploring Artif. Intell. New Millennium 8, 236–239 (2003)

    Google Scholar 

  14. Everingham, M., Van, G., Williams, C., Winn, J., Zisserman, A.: The pascal visual object classes (VOC) challenge. Int. J. Comput. Vis. 88(2), 303–338 (2010)

    Article  Google Scholar 

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Correspondence to Shuo Li .

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Zhao, S., Wu, X., Chen, B., Li, S. (2019). Automatic Vertebrae Recognition from Arbitrary Spine MRI Images by a Hierarchical Self-calibration Detection Framework. In: Shen, D., et al. Medical Image Computing and Computer Assisted Intervention – MICCAI 2019. MICCAI 2019. Lecture Notes in Computer Science(), vol 11767. Springer, Cham. https://doi.org/10.1007/978-3-030-32251-9_35

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  • DOI: https://doi.org/10.1007/978-3-030-32251-9_35

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-32250-2

  • Online ISBN: 978-3-030-32251-9

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