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An Efficient LightGBM Model to Predict Protein Self-interacting Using Chebyshev Moments and Bi-gram

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Intelligent Computing Theories and Application (ICIC 2019)

Part of the book series: Lecture Notes in Computer Science ((LNISA,volume 11644))

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Abstract

Protein self-interactions (SIPs) play significant roles in most life activities. Although numerous computational methods have been developed to predict SIPs, there is still a need of efficient and accurate techniques to improve the performance of SIPs prediction. In this paper, we proposed a machine learning scheme named LGCM for accurate SIP predictions based on protein sequence information. More specifically, an novel feature descriptor employing bi-gram and Chebyshev moments algorithm was developed with the extraction of discriminative sequence information. Then, we fed the integrated protein features into LightGBM classifier as input to train automatic LGCM model. It was demonstrated by rigorous cross-validations that the proposed approach LGCM had a superior prediction performance than other previous methods for SIP predictions with the accuracy of 96.90% and 98.29% on yeast and human datasets, respectively. Experiment results anticipated the effectiveness and reliability of LGCM and played a definite guiding role in future bioinformatics research.

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Author information

Authors and Affiliations

  1. School of Computer Science and Technology, China University of Mining and Technology, Xuzhou, 221116, China

    Zhao-Hui Zhan, Yong Zhou, Kai Zheng & Zheng-Wei Li

  2. The Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Science, Urumqi, 830011, China

    Zhu-Hong You

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  1. Zhao-Hui Zhan
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  2. Zhu-Hong You
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  3. Yong Zhou
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  4. Kai Zheng
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  5. Zheng-Wei Li
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Corresponding author

Correspondence to Zhu-Hong You .

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Editors and Affiliations

  1. Tongji University, Shanghai, China

    De-Shuang Huang

  2. University of Ulsan, Ulsan, Korea (Republic of)

    Kang-Hyun Jo

  3. Nanchang Institute of Technology, Nanchang, China

    Zhi-Kai Huang

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Zhan, ZH., You, ZH., Zhou, Y., Zheng, K., Li, ZW. (2019). An Efficient LightGBM Model to Predict Protein Self-interacting Using Chebyshev Moments and Bi-gram. In: Huang, DS., Jo, KH., Huang, ZK. (eds) Intelligent Computing Theories and Application. ICIC 2019. Lecture Notes in Computer Science(), vol 11644. Springer, Cham. https://doi.org/10.1007/978-3-030-26969-2_43

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  • DOI: https://doi.org/10.1007/978-3-030-26969-2_43

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