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Continuous-Time Simulation of Epidemic Processes on Dynamic Interaction Networks

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Social, Cultural, and Behavioral Modeling (SBP-BRiMS 2019)

Abstract

Contagious processes on networks, such as spread of disease through physical proximity or information diffusion over social media, are continuous-time processes that depend upon the pattern of interactions between the individuals in the network. Continuous-time stochastic epidemic models are a natural fit for modeling the dynamics of such processes. However, prior work on such continuous-time models doesn’t consider the dynamics of the underlying interaction network which involves addition and removal of edges over time. Instead, researchers have typically simulated these processes using discrete-time approximations, in which one has to trade off between high simulation accuracy and short computation time. In this paper, we incorporate continuous-time network dynamics (addition and removal of edges) into continuous-time epidemic simulations. We propose a rejection-sampling based approach coupled with the well-known Gillespie algorithm that enables exact simulation of the continuous-time epidemic process. Our proposed approach gives exact results, and the computation time required for simulation is reduced as compared to discrete-time approximations of comparable accuracy.

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Notes

  1. 1.

    Simulating a continuous-time epidemic model using a discrete-time approximation is also sometimes referred to as rejection sampling, e.g. in [6, 12]. We refrain from such terminology in this paper as our proposed rejection sampling approach is exact.

References

  1. Ahmad, R., Xu, K.S.: Effects of contact network models on stochastic epidemic simulations. In: Ciampaglia, G.L., Mashhadi, A., Yasseri, T. (eds.) SocInfo 2017. LNCS, vol. 10540, pp. 101–110. Springer, Cham (2017). https://doi.org/10.1007/978-3-319-67256-4_10

    Chapter  Google Scholar 

  2. Allen, L.J.: Some discrete-time SI, SIR, and SIS epidemic models. Math. Biosci. 124(1), 83–105 (1994)

    Article  MathSciNet  Google Scholar 

  3. Allen, L.J.: A primer on stochastic epidemic models: formulation, numerical simulation, and analysis. Infect. Dis. Model. 2(2), 128–142 (2017)

    Google Scholar 

  4. Dong, W., Heller, K., Pentland, A.S.: Modeling infection with multi-agent dynamics. In: Yang, S.J., Greenberg, A.M., Endsley, M. (eds.) SBP 2012. LNCS, vol. 7227, pp. 172–179. Springer, Heidelberg (2012). https://doi.org/10.1007/978-3-642-29047-3_21

    Chapter  Google Scholar 

  5. Efron, B., Tibshirani, R.J.: An Introduction to the Bootstrap. CRC Press, Boca Raton (1994)

    Google Scholar 

  6. Fennell, P.G., Melnik, S., Gleeson, J.P.: Limitations of discrete-time approaches to continuous-time contagion dynamics. Phys. Rev. E 94, 052125 (2016)

    Article  Google Scholar 

  7. Fournet, J., Barrat, A.: Contact patterns among high school students. PLoS One 9(9), e107878 (2014)

    Article  Google Scholar 

  8. Gillespie, D.T.: Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81(25), 2340–2361 (1977)

    Article  Google Scholar 

  9. Holme, P.: Modern temporal network theory: a colloquium. Eur. Phys. J. B 88(9), 234 (2015)

    Article  Google Scholar 

  10. Kim, L., Abramson, M., Drakopoulos, K., Kolitz, S., Ozdaglar, A.: Estimating social network structure and propagation dynamics for an infectious disease. In: Kennedy, W.G., Agarwal, N., Yang, S.J. (eds.) SBP 2014. LNCS, vol. 8393, pp. 85–93. Springer, Cham (2014). https://doi.org/10.1007/978-3-319-05579-4_11

    Chapter  Google Scholar 

  11. Stehlé, J., et al.: Simulation of an SEIR infectious disease model on the dynamic contact network of conference attendees. BMC Med. 9(1), 87 (2011)

    Article  Google Scholar 

  12. Vestergaard, C.L., Génois, M.: Temporal Gillespie algorithm: fast simulation of contagion processes on time-varying networks. PLOS Comput. Biol. 11(10), 1–28 (2015)

    Article  Google Scholar 

  13. Volz, E.M., Miller, J.C., Galvani, A., Ancel Meyers, L.: Effects of heterogeneous and clustered contact patterns on infectious disease dynamics. PLOS Comput. Biol. 7(6), 1–13 (2011)

    Article  MathSciNet  Google Scholar 

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Acknowledgements

This material is based upon work supported by the National Science Foundation grant IIS-1755824.

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Correspondence to Kevin S. Xu .

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Ahmad, R., Xu, K.S. (2019). Continuous-Time Simulation of Epidemic Processes on Dynamic Interaction Networks. In: Thomson, R., Bisgin, H., Dancy, C., Hyder, A. (eds) Social, Cultural, and Behavioral Modeling. SBP-BRiMS 2019. Lecture Notes in Computer Science(), vol 11549. Springer, Cham. https://doi.org/10.1007/978-3-030-21741-9_15

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  • DOI: https://doi.org/10.1007/978-3-030-21741-9_15

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