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Cytomolecular Insight Into Lupinus Genomes

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The Lupin Genome

Part of the book series: Compendium of Plant Genomes ((CPG))

Abstract

Lupins are a group within Genisteae interesting from the point of view of their complex evolutionary history, which is the result of their paleoploid origin (Atkins et al in Lupins as crop plants: biology, production, and utilization. CAB International, pp 67–92, 1998; Gladstones in Lupins as crop plants: biology, production, and utilization. CAB International, pp. 1–36, 1998). Contemporary species are characterised by a striking diversity of chromosome numbers. Their genomes vary in size and consist of many small and similar length chromosomes. The Old World lupins and New World lupins are different in their cytological traits such as the basic and somatic chromosome numbers. Here, we summarise the cytogenetic research on genome size estimation, chromosome number identification and integrative genetic and cytogenetic mapping. The importance of narrow-leafed lupin as a crop and the relative wealth of data concerning its cytogenetic and genetic characterisation have led to its role as a useful model species within the genus Lupinus and a reference for better understanding of legume genome evolution. Cytogenetic comparative mapping, using L. angustifolius-derived markers, has revealed the karyotype variation in lupins. Insight into chromosome rearrangements has led to a hypothetic model of lupin karyotype evolution. This research has established a starting point for the further analysis of the structure and diversity of lupin karyotypes in the facet of evolution.

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References

  • Atkins CA, Smith PMC, Gupta S, Jones MGK, Caligari PDS (1998) Genetics, cytology and biotechnology. In: Gladstones JS, Atkins CA, Hamblin J (eds) Lupins as crop plants: biology, production, and utilization. CAB International, pp 67–92

    Google Scholar 

  • Drummond CS, Eastwood RJ, Miotto ST, Hughes CE (2012) Multiple continental radiations and correlates of diversification in Lupinus (Leguminosae): testing for key innovation with incomplete taxon sampling. Syst Biol 61:443–460

    Article  Google Scholar 

  • Dunn DB (1984) Cytotaxonomy and distribution of new world lupin species. In: Proceedings of the 3rd international lupin conference, 4–8 June 1984, La Rochelle, France, pp 67–85

    Google Scholar 

  • Gladstones JS (1998) Distribution, origin, taxonomy, history and importance. In: Gladstones JS, Atkins CA, Hamblin J (eds) Lupins as crop plants: biology, production, and utilization. CAB International, pp 1–36

    Google Scholar 

  • Hajdera I, Siwinska D, Hasterok R, Maluszynska J (2003) Molecular cytogenetic analysis of genome structure in Lupinus angustifolius and Lupinus cosentinii. Theor Appl Genet 107:988–996

    Article  CAS  Google Scholar 

  • Hane JK, Ming Y, Kamphuis LG, Nelson MN, Garg G, Atkins CA, Bayer PE, Bravo A, Bringans S, Cannon S et al (2017) A comprehensive draft genome sequence for lupin (Lupinus angustifolius), an emerging health food: insights into plant–microbe interactions and legume evolution. Plant Biotechnol J 15:318–330. https://doi.org/10.1111/pbi.12615

  • Kaczmarek A, Naganowska B, Wolko B (2009) Karyotyping of the narrow-leafed lupin (Lupinus angustifolius L.) by using FISH, PRINS and computer measurements of chromosomes. J Appl Genet 50:77–82

    Article  CAS  Google Scholar 

  • Kasprzak A, Safar J, Janda J, Dolezel J, Wolko B, Naganowska B (2006) The bacterial artificial chromosome (BAC) library of the narrow-leafed lupin (Lupinus angustifolius L.). Cell Mol Biol Lett 11:396–407

    Article  CAS  Google Scholar 

  • Kroc M, Koczyk G, Swiecicki W, Kilian A, Nelson MN (2014) New evidence of ancestral polyploidy in the Genistoid legume Lupinus angustifolius L. (narrow-leafed lupin). Theor Appl Genet 127:1237–1249

    Google Scholar 

  • Ksiazkiewicz M, Wyrwa K, Szczepaniak A, Rychel S, Majcherkiewicz K, Przysiecka L, Karlowski W, Wolko B, Naganowska B (2013) Comparative genomics of Lupinus angustifolius gene-rich regions: BAC library exploration, genetic mapping and cytogenetics. BMC Genomics 14:79

    Article  CAS  Google Scholar 

  • Ksiazkiewicz M, Zielezinski A, Wyrwa K, Szczepaniak A, Rychel S, Karlowski W, Wolko B, Naganowska B (2015) Remnants of the legume ancestral genome preserved in gene-rich regions: insights from Lupinus angustifolius physical, genetic, and comparative mapping. Plant Mol Biol Rep 33:84–101

    Article  CAS  Google Scholar 

  • Ksiazkiewicz M, Rychel S., Nelson MN, Wyrwa K, Naganowska B, Wolko B (2016) Expansion of the phosphatidylethanolamine binding protein family in legumes: a case study of Lupinus angustifolius L. FLOWERING LOCUS T homologs, LanFTc1 and LanFTc2. BMC Genomics 17:820

    Google Scholar 

  • Lesniewska K, Ksiazkiewicz M, Nelson MN, Mahe F, Ainouche A, Wolko B, Naganowska B (2011) Assignment of 3 genetic linkage groups to 3 chromosomes of narrow-leafed lupin. J Hered 102:228–236

    Article  CAS  Google Scholar 

  • Naganowska B, Kaczmarek A (2005) Repetitive DNA sequences in cytogenetic studies of the Lupinus genome. In: Santen EV, Hill GD (eds) 11th international lupin conference, Guadalajara, Jalisco, Mexico. International Lupin Association, Canterbury, New Zealand, pp 27–29

    Google Scholar 

  • Naganowska B, Zielinska A (2002) Physical mapping of 18S–25S rDNA and 5S rDNA in Lupinus via fluorescent in situ hybridization. Cell Mol Biol Lett 7:665–670

    CAS  PubMed  Google Scholar 

  • Naganowska B, Zielinska A (2004) Localisation of rDNA in the Lupinus genome during the cell cycle. J Appl Genet 45:189–193

    PubMed  Google Scholar 

  • Naganowska B, Wolko B, Sliwinska E, Kaczmarek Z (2003) Nuclear DNA content variation and species relationships in the genus Lupinus (Fabaceae). Ann Bot 92:349–355

    Article  CAS  Google Scholar 

  • Naganowska B, Wolko B, Śliwińska E, Kaczmarek Z, Schifino-Wittmann M (2006) 2C DNA variation and relationships among new world species of the genus Lupinus (Fabaceae). Plant Syst Evol 256:147–157

    Article  Google Scholar 

  • Nelson MN, Moolhuijzen PM, Boersma JG, Chudy M, Lesniewska K, Bellgard M, Oliver RP, Swiecicki W, Wolko B, Cowling WA, Ellwood SR (2010) Aligning a new reference genetic map of Lupinus angustifolius with the genome sequence of the model legume Lotus japonicus. DNA Res 17:73–83

    Article  CAS  Google Scholar 

  • Nelson MN, Ksiazkiewicz M, Rychel S, Besharat N, Taylor CM, Wyrwa K, Jost R, Erskine W, Cowling WA, Berger JD, Batley J, Weller JL, Naganowska B, Wolko B (2017) The loss of vernalization requirement in narrow-leafed lupin is associated with a deletion in the promoter and de-repressed expression of a Flowering Locus T (FT) homologue. New Phytol 213:220–232

    Article  CAS  Google Scholar 

  • Przysiecka L, Ksiazkiewicz M, Wolko B, Naganowska B (2015) Structure, expression profile and phylogenetic inference of chalcone isomerase-like genes from the narrow-leafed lupin (Lupinus angustifolius L.) genome. Front Plant Sci 6:268

    Google Scholar 

  • Susek K, Bielski WK, Hasterok R, Naganowska B, Wolko B (2016) A first glimpse of wild lupin karyotype variation as revealed by comparative cytogenetic mapping. Front Plant Sci 7:1152

    Article  Google Scholar 

  • Susek K, Braszewska-Zalewska A, Bewick AJ, Hasterok R, Schmitz RJ, Naganowska B (2017) Epigenomic diversification within the genus Lupinus. PLoS ONE 12:e0179821

    Article  Google Scholar 

  • Susek K, Bielski W, Czyż KB, Hasterok R, Jackson SA, Wolko B, Naganowska B (2019) Impact of chromosomal rearrangements on the interpretation of lupin karyotype evolution. Genes 10:259. https://doi.org/10.3390/genes10040259

  • Wendel JF, Jackson SA, Meyers BC, Wing RA (2016) Evolution of plant genome architecture. Genome Biol 17:37. https://doi.org/10.1186/s13059-016-0908-1

  • Wolko B, Clements JC, Naganowska B, Nelson MN, Yang H (2011) Lupinus. In: Kole C (ed) Wild crop relatives: genomic and breeding resources. Springer, Berlin, pp 153–206

    Google Scholar 

  • Wyrwa K, Ksiazkiewicz M, Szczepaniak A, Susek K, Podkowinski J, Naganowska B (2016) Integration of Lupinus angustifolius L. (narrow-leafed lupin) genome maps and comparative mapping within legumes. Chromosome Res

    Google Scholar 

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Correspondence to Karolina Susek .

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Susek, K., Naganowska, B. (2020). Cytomolecular Insight Into Lupinus Genomes. In: Singh, K., Kamphuis, L., Nelson, M. (eds) The Lupin Genome. Compendium of Plant Genomes. Springer, Cham. https://doi.org/10.1007/978-3-030-21270-4_4

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