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Self-training for Cell Segmentation and Counting

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Advances in Artificial Intelligence (Canadian AI 2019)

Part of the book series: Lecture Notes in Computer Science ((LNAI,volume 11489))

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Abstract

Learning semantic segmentation and object counting often need a large amount of training data while manual labeling is expensive. The goal of this paper is to train such networks on a small set of annotations. We propose an Expectation Maximization(EM)-like self-training method that first trains a model on a small amount of labeled data and adds additional unlabeled data with the model’s own predictions as labels. We find that the methods of thresholding used to generate pseudo-labels are critical and that only one of the methods proposed here can slightly improve the model’s performance on semantic segmentation. However, we also show that the induced value changes in the prediction map helped to isolate cells that we use in a new counting algorithm.

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Correspondence to J. Luo .

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Luo, J., Oore, S., Hollensen, P., Fine, A., Trappenberg, T. (2019). Self-training for Cell Segmentation and Counting. In: Meurs, MJ., Rudzicz, F. (eds) Advances in Artificial Intelligence. Canadian AI 2019. Lecture Notes in Computer Science(), vol 11489. Springer, Cham. https://doi.org/10.1007/978-3-030-18305-9_37

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  • DOI: https://doi.org/10.1007/978-3-030-18305-9_37

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-030-18304-2

  • Online ISBN: 978-3-030-18305-9

  • eBook Packages: Computer ScienceComputer Science (R0)

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